RNA–Protein interactions for RNA: ENST00000285116.7

SKA1-201, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SKA1, Length 2,905 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-201ENST00000285116 NISCHQ9Y2I1 1504 aa21.39■■□□□ 1.01
SKA1-201ENST00000285116 CCDC180Q9P1Z9 1646 aa18.36■□□□□ 0.53
SKA1-201ENST00000285116 ZCCHC6Q5VYS8 1495 aaKnown RBP18.17■□□□□ 0.5
SKA1-201ENST00000285116 DCAF8L2P0C7V8 631 aa18.14■□□□□ 0.49
SKA1-201ENST00000285116 SHROOM4Q9ULL8 1493 aa17.83■□□□□ 0.45
SKA1-201ENST00000285116 DCAF1Q9Y4B6 1507 aa17.78■□□□□ 0.44
SKA1-201ENST00000285116 SUPT5HO00267 1087 aaKnown RBP17.54■□□□□ 0.4
SKA1-201ENST00000285116 ABCC9O60706 1549 aa17.4■□□□□ 0.38
SKA1-201ENST00000285116 CHIC1Q5VXU3 224 aa17.35■□□□□ 0.37
SKA1-201ENST00000285116 MYO15BQ96JP2 1530 aa17.35■□□□□ 0.37
SKA1-201ENST00000285116 HRCP23327 699 aa17.26■□□□□ 0.35
SKA1-201ENST00000285116 RSF1Q96T23 1441 aaPredicted RBP16.88■□□□□ 0.29
SKA1-201ENST00000285116 SCRIBQ14160 1630 aa16.86■□□□□ 0.29
SKA1-201ENST00000285116 RB1CC1Q8TDY2 1594 aa16.85■□□□□ 0.29
SKA1-201ENST00000285116 PCGF6Q9BYE7 350 aa16.85■□□□□ 0.29
SKA1-201ENST00000285116 NACADO15069 1562 aa16.83■□□□□ 0.28
SKA1-201ENST00000285116 PABPN1Q86U42 306 aaKnown RBP eCLIP16.8■□□□□ 0.28
SKA1-201ENST00000285116 PPARGC1BQ86YN6 1023 aaKnown RBP16.75■□□□□ 0.27
SKA1-201ENST00000285116 PELP1Q8IZL8 1130 aaKnown RBP16.66■□□□□ 0.26
SKA1-201ENST00000285116 LOC105371045A0A1W2PR82 267 aa16.64■□□□□ 0.25
SKA1-201ENST00000285116 TRIM26Q12899 539 aaPredicted RBP16.64■□□□□ 0.25
SKA1-201ENST00000285116 BAZ1AQ9NRL2 1556 aaPredicted RBP16.54■□□□□ 0.24
SKA1-201ENST00000285116 MROH2BQ7Z745 1585 aa16.54■□□□□ 0.24
SKA1-201ENST00000285116 EIF4G1Q04637 1599 aaKnown RBP16.52■□□□□ 0.24
SKA1-201ENST00000285116 CECR2Q9BXF3 1484 aa16.49■□□□□ 0.23
SKA1-201ENST00000285116 TRIM41Q8WV44 630 aa16.48■□□□□ 0.23
SKA1-201ENST00000285116 WIZO95785 1651 aa16.46■□□□□ 0.23
SKA1-201ENST00000285116 ZEB1P37275 1124 aaPredicted RBP16.45■□□□□ 0.22
SKA1-201ENST00000285116 TOP2AP11388 1531 aaKnown RBP16.34■□□□□ 0.21
SKA1-201ENST00000285116 SMARCA4P51532 1647 aa16.29■□□□□ 0.2
SKA1-201ENST00000285116 UNC13AQ9UPW8 1703 aa16.27■□□□□ 0.2
SKA1-201ENST00000285116 SCAF1Q9H7N4 1312 aaKnown RBP16.22■□□□□ 0.19
SKA1-201ENST00000285116 SMARCA2P51531 1590 aa16.21■□□□□ 0.19
SKA1-201ENST00000285116 EHMT2Q96KQ7 1210 aa16.18■□□□□ 0.18
SKA1-201ENST00000285116 WRNQ14191 1432 aaPredicted RBP eCLIP16.17■□□□□ 0.18
SKA1-201ENST00000285116 CCDC88BA6NC98 1476 aa16.13■□□□□ 0.17
SKA1-201ENST00000285116 FAM9AQ8IZU1 332 aaPredicted RBP16.12■□□□□ 0.17
SKA1-201ENST00000285116 EEA1Q15075 1411 aa16.12■□□□□ 0.17
SKA1-201ENST00000285116 PEG3Q9GZU2 1588 aa16.12■□□□□ 0.17
SKA1-201ENST00000285116 ABCC8Q09428 1581 aa16.05■□□□□ 0.16
SKA1-201ENST00000285116 MYT1Q01538 1121 aa16.04■□□□□ 0.16
SKA1-201ENST00000285116 TNIKQ9UKE5 1360 aa16.01■□□□□ 0.15
SKA1-201ENST00000285116 BICRAQ9NZM4 1560 aa16■□□□□ 0.15
SKA1-201ENST00000285116 CEP162Q5TB80 1403 aa15.96■□□□□ 0.15
SKA1-201ENST00000285116 KIF21BO75037 1637 aa15.92■□□□□ 0.14
SKA1-201ENST00000285116 DNAJC5BQ9UF47 199 aa15.91■□□□□ 0.14
SKA1-201ENST00000285116 ACIN1Q9UKV3 1341 aaKnown RBP15.91■□□□□ 0.14
SKA1-201ENST00000285116 GOLGA3Q08378 1498 aa15.9■□□□□ 0.14
SKA1-201ENST00000285116 SOGA1O94964 1423 aa15.89■□□□□ 0.13
SKA1-201ENST00000285116 CSRNP3Q8WYN3 585 aa15.82■□□□□ 0.12
SKA1-201ENST00000285116 CEP164Q9UPV0 1460 aa15.81■□□□□ 0.12
SKA1-201ENST00000285116 NEUROD1Q13562 356 aa15.81■□□□□ 0.12
SKA1-201ENST00000285116 BAZ1BQ9UIG0 1483 aaKnown RBP15.8■□□□□ 0.12
SKA1-201ENST00000285116 SYNJ1O43426 1573 aa15.8■□□□□ 0.12
SKA1-201ENST00000285116 RUSC2Q8N2Y8 1516 aa15.79■□□□□ 0.12
SKA1-201ENST00000285116 CENPBP07199 599 aaPredicted RBP15.76■□□□□ 0.11
SKA1-201ENST00000285116 ATAD2BQ9ULI0 1458 aa15.76■□□□□ 0.11
SKA1-201ENST00000285116 CCER1Q8TC90 406 aaPredicted RBP15.76■□□□□ 0.11
SKA1-201ENST00000285116 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.73■□□□□ 0.11
SKA1-201ENST00000285116 GTF3C3Q9Y5Q9 886 aa15.72■□□□□ 0.11
SKA1-201ENST00000285116 BIVM-ERCC5R4GMW8 1640 aa15.72■□□□□ 0.11
SKA1-201ENST00000285116 TOP2BQ02880 1626 aa15.71■□□□□ 0.1
SKA1-201ENST00000285116 DIEXFQ68CQ4 756 aaKnown RBP15.66■□□□□ 0.1
SKA1-201ENST00000285116 VPS8Q8N3P4 1428 aa15.66■□□□□ 0.1
SKA1-201ENST00000285116 ERICH3Q5RHP9 1530 aa15.64■□□□□ 0.09
SKA1-201ENST00000285116 CLIP1P30622 1438 aa15.62■□□□□ 0.09
SKA1-201ENST00000285116 UBTFP17480 764 aaKnown RBP15.61■□□□□ 0.09
SKA1-201ENST00000285116 AEBP2Q6ZN18 517 aaPredicted RBP15.61■□□□□ 0.09
SKA1-201ENST00000285116 HMGXB3Q12766 1538 aa15.6■□□□□ 0.09
SKA1-201ENST00000285116 RAPGEF2Q9Y4G8 1499 aa15.55■□□□□ 0.08
SKA1-201ENST00000285116 PRXQ9BXM0 1461 aa15.53■□□□□ 0.08
SKA1-201ENST00000285116 RANGAP1P46060 587 aaPredicted RBP15.51■□□□□ 0.07
SKA1-201ENST00000285116 PRDM2Q13029 1718 aa15.51■□□□□ 0.07
SKA1-201ENST00000285116 NCAPD3P42695 1498 aa15.5■□□□□ 0.07
SKA1-201ENST00000285116 ZNF316A6NFI3 1004 aaPredicted RBP15.5■□□□□ 0.07
SKA1-201ENST00000285116 CLSPNQ9HAW4 1339 aa15.47■□□□□ 0.07
SKA1-201ENST00000285116 ARAP1Q96P48 1450 aa15.44■□□□□ 0.06
SKA1-201ENST00000285116 CUX1P39880 1505 aa15.42■□□□□ 0.06
SKA1-201ENST00000285116 CUX2O14529 1486 aa15.4■□□□□ 0.06
SKA1-201ENST00000285116 CFTRP13569 1480 aa15.39■□□□□ 0.05
SKA1-201ENST00000285116 RRBP1Q9P2E9 1410 aaKnown RBP15.37■□□□□ 0.05
SKA1-201ENST00000285116 TTBK1Q5TCY1 1321 aaPredicted RBP15.37■□□□□ 0.05
SKA1-201ENST00000285116 KIF27Q86VH2 1401 aa15.35■□□□□ 0.05
SKA1-201ENST00000285116 APLP2Q06481 763 aa15.35■□□□□ 0.05
SKA1-201ENST00000285116 MAP3K1Q13233 1512 aa15.34■□□□□ 0.05
SKA1-201ENST00000285116 YTHDC1Q96MU7 727 aaKnown RBP15.29■□□□□ 0.04
SKA1-201ENST00000285116 DHX57Q6P158 1386 aaKnown RBP15.28■□□□□ 0.04
SKA1-201ENST00000285116 HNRNPUL2Q1KMD3 747 aaKnown RBP15.28■□□□□ 0.04
SKA1-201ENST00000285116 CC2D2AQ9P2K1 1620 aa15.28■□□□□ 0.04
SKA1-201ENST00000285116 ARHGAP35Q9NRY4 1499 aa15.26■□□□□ 0.03
SKA1-201ENST00000285116 MIER1Q8N108 512 aa15.23■□□□□ 0.03
SKA1-201ENST00000285116 NESP48681 1621 aa15.23■□□□□ 0.03
SKA1-201ENST00000285116 SLC24A1O60721 1099 aa15.22■□□□□ 0.03
SKA1-201ENST00000285116 TIAM1Q13009 1591 aa15.2■□□□□ 0.02
SKA1-201ENST00000285116 CFAP43Q8NDM7 1665 aa15.19■□□□□ 0.02
SKA1-201ENST00000285116 CCNB3Q8WWL7 1395 aa15.17■□□□□ 0.02
SKA1-201ENST00000285116 KANK4Q5T7N3 995 aaPredicted RBP15.15■□□□□ 0.02
SKA1-201ENST00000285116 IGF1RP08069 1367 aa15.14■□□□□ 0.01
SKA1-201ENST00000285116 CADPSQ9ULU8 1353 aa15.11■□□□□ 0.01
SKA1-201ENST00000285116 LRRC9Q6ZRR7 1453 aa15.08■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms