RNA–Protein interactions for RNA: ENST00000281834.3

TNFSF4-201, Transcript of TNF superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFSF4, Length 3,470 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFSF4-201ENST00000281834 NISCHQ9Y2I1 1504 aa12.62□□□□□ -0.39
TNFSF4-201ENST00000281834 SHROOM4Q9ULL8 1493 aa11.03□□□□□ -0.64
TNFSF4-201ENST00000281834 DCAF8L2P0C7V8 631 aa11.03□□□□□ -0.64
TNFSF4-201ENST00000281834 SUPT5HO00267 1087 aaKnown RBP10.77□□□□□ -0.69
TNFSF4-201ENST00000281834 CCDC180Q9P1Z9 1646 aa10.63□□□□□ -0.71
TNFSF4-201ENST00000281834 ZCCHC6Q5VYS8 1495 aaKnown RBP10.61□□□□□ -0.71
TNFSF4-201ENST00000281834 ABCC9O60706 1549 aa10.38□□□□□ -0.75
TNFSF4-201ENST00000281834 SCRIBQ14160 1630 aa10.21□□□□□ -0.77
TNFSF4-201ENST00000281834 CHIC1Q5VXU3 224 aa10.2□□□□□ -0.78
TNFSF4-201ENST00000281834 DCAF1Q9Y4B6 1507 aa10.19□□□□□ -0.78
TNFSF4-201ENST00000281834 EHMT2Q96KQ7 1210 aa10.08□□□□□ -0.8
TNFSF4-201ENST00000281834 MYO15BQ96JP2 1530 aa10.05□□□□□ -0.8
TNFSF4-201ENST00000281834 LOC105371045A0A1W2PR82 267 aa10.02□□□□□ -0.8
TNFSF4-201ENST00000281834 FAM9AQ8IZU1 332 aaPredicted RBP10.02□□□□□ -0.81
TNFSF4-201ENST00000281834 PABPN1Q86U42 306 aaKnown RBP eCLIP10.01□□□□□ -0.81
TNFSF4-201ENST00000281834 RSF1Q96T23 1441 aaPredicted RBP10□□□□□ -0.81
TNFSF4-201ENST00000281834 CECR2Q9BXF3 1484 aa9.98□□□□□ -0.81
TNFSF4-201ENST00000281834 NACADO15069 1562 aa9.97□□□□□ -0.81
TNFSF4-201ENST00000281834 TRIM41Q8WV44 630 aa9.95□□□□□ -0.82
TNFSF4-201ENST00000281834 RB1CC1Q8TDY2 1594 aa9.89□□□□□ -0.83
TNFSF4-201ENST00000281834 MROH2BQ7Z745 1585 aa9.87□□□□□ -0.83
TNFSF4-201ENST00000281834 PCGF6Q9BYE7 350 aa9.87□□□□□ -0.83
TNFSF4-201ENST00000281834 WIZO95785 1651 aa9.79□□□□□ -0.84
TNFSF4-201ENST00000281834 PPARGC1BQ86YN6 1023 aaKnown RBP9.72□□□□□ -0.85
TNFSF4-201ENST00000281834 BAZ1AQ9NRL2 1556 aaPredicted RBP9.7□□□□□ -0.86
TNFSF4-201ENST00000281834 TTBK1Q5TCY1 1321 aaPredicted RBP9.68□□□□□ -0.86
TNFSF4-201ENST00000281834 UNC13AQ9UPW8 1703 aa9.64□□□□□ -0.87
TNFSF4-201ENST00000281834 SMARCA4P51532 1647 aa9.62□□□□□ -0.87
TNFSF4-201ENST00000281834 CCDC88BA6NC98 1476 aa9.62□□□□□ -0.87
TNFSF4-201ENST00000281834 RANGAP1P46060 587 aaPredicted RBP9.6□□□□□ -0.87
TNFSF4-201ENST00000281834 ABCC8Q09428 1581 aa9.6□□□□□ -0.87
TNFSF4-201ENST00000281834 BICRAQ9NZM4 1560 aa9.59□□□□□ -0.87
TNFSF4-201ENST00000281834 HRCP23327 699 aa9.58□□□□□ -0.88
TNFSF4-201ENST00000281834 UBTFP17480 764 aaKnown RBP9.57□□□□□ -0.88
TNFSF4-201ENST00000281834 TOP2AP11388 1531 aaKnown RBP9.56□□□□□ -0.88
TNFSF4-201ENST00000281834 TRIM26Q12899 539 aaPredicted RBP9.56□□□□□ -0.88
TNFSF4-201ENST00000281834 SMARCA2P51531 1590 aa9.52□□□□□ -0.89
TNFSF4-201ENST00000281834 SOGA1O94964 1423 aa9.5□□□□□ -0.89
TNFSF4-201ENST00000281834 BAZ1BQ9UIG0 1483 aaKnown RBP9.5□□□□□ -0.89
TNFSF4-201ENST00000281834 ATAD2BQ9ULI0 1458 aa9.49□□□□□ -0.89
TNFSF4-201ENST00000281834 CSRNP3Q8WYN3 585 aa9.47□□□□□ -0.89
TNFSF4-201ENST00000281834 RUSC2Q8N2Y8 1516 aa9.46□□□□□ -0.89
TNFSF4-201ENST00000281834 WRNQ14191 1432 aaPredicted RBP eCLIP9.44□□□□□ -0.9
TNFSF4-201ENST00000281834 EIF4G1Q04637 1599 aaKnown RBP9.4□□□□□ -0.9
TNFSF4-201ENST00000281834 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.37□□□□□ -0.91
TNFSF4-201ENST00000281834 CEP162Q5TB80 1403 aa9.36□□□□□ -0.91
TNFSF4-201ENST00000281834 CCER1Q8TC90 406 aaPredicted RBP9.33□□□□□ -0.92
TNFSF4-201ENST00000281834 SYNJ1O43426 1573 aa9.32□□□□□ -0.92
TNFSF4-201ENST00000281834 PEG3Q9GZU2 1588 aa9.32□□□□□ -0.92
TNFSF4-201ENST00000281834 APLP2Q06481 763 aa9.3□□□□□ -0.92
TNFSF4-201ENST00000281834 TNIKQ9UKE5 1360 aa9.29□□□□□ -0.92
TNFSF4-201ENST00000281834 HNRNPUL2Q1KMD3 747 aaKnown RBP9.28□□□□□ -0.92
TNFSF4-201ENST00000281834 NCAPD3P42695 1498 aa9.28□□□□□ -0.92
TNFSF4-201ENST00000281834 GOLGA3Q08378 1498 aa9.28□□□□□ -0.92
TNFSF4-201ENST00000281834 EEA1Q15075 1411 aa9.26□□□□□ -0.93
TNFSF4-201ENST00000281834 DNAJC5BQ9UF47 199 aa9.25□□□□□ -0.93
TNFSF4-201ENST00000281834 RAPGEF2Q9Y4G8 1499 aa9.25□□□□□ -0.93
TNFSF4-201ENST00000281834 CLIP1P30622 1438 aa9.24□□□□□ -0.93
TNFSF4-201ENST00000281834 CEP164Q9UPV0 1460 aa9.23□□□□□ -0.93
TNFSF4-201ENST00000281834 ATP1B4Q9UN42 357 aaPredicted RBP9.23□□□□□ -0.93
TNFSF4-201ENST00000281834 ZEB1P37275 1124 aaPredicted RBP9.22□□□□□ -0.93
TNFSF4-201ENST00000281834 P3H3Q8IVL6 736 aa9.2□□□□□ -0.94
TNFSF4-201ENST00000281834 HMGXB3Q12766 1538 aa9.19□□□□□ -0.94
TNFSF4-201ENST00000281834 CADPSQ9ULU8 1353 aa9.18□□□□□ -0.94
TNFSF4-201ENST00000281834 CC2D2AQ9P2K1 1620 aa9.18□□□□□ -0.94
TNFSF4-201ENST00000281834 ITGAEP38570 1179 aa9.18□□□□□ -0.94
TNFSF4-201ENST00000281834 CFTRP13569 1480 aa9.18□□□□□ -0.94
TNFSF4-201ENST00000281834 CUX1P39880 1505 aa9.18□□□□□ -0.94
TNFSF4-201ENST00000281834 KIF27Q86VH2 1401 aa9.16□□□□□ -0.94
TNFSF4-201ENST00000281834 CUX2O14529 1486 aa9.16□□□□□ -0.94
TNFSF4-201ENST00000281834 NESP48681 1621 aa9.15□□□□□ -0.94
TNFSF4-201ENST00000281834 TOP2BQ02880 1626 aa9.15□□□□□ -0.94
TNFSF4-201ENST00000281834 KANK4Q5T7N3 995 aaPredicted RBP9.11□□□□□ -0.95
TNFSF4-201ENST00000281834 VPS8Q8N3P4 1428 aa9.11□□□□□ -0.95
TNFSF4-201ENST00000281834 FANCD2Q9BXW9 1451 aa9.1□□□□□ -0.95
TNFSF4-201ENST00000281834 KIF21BO75037 1637 aa9.09□□□□□ -0.95
TNFSF4-201ENST00000281834 FGD5Q6ZNL6 1462 aa9.09□□□□□ -0.95
TNFSF4-201ENST00000281834 RAD54L2Q9Y4B4 1467 aa9.09□□□□□ -0.95
TNFSF4-201ENST00000281834 IGF1RP08069 1367 aa9.08□□□□□ -0.96
TNFSF4-201ENST00000281834 CARMIL1Q5VZK9 1371 aa9.08□□□□□ -0.96
TNFSF4-201ENST00000281834 PRXQ9BXM0 1461 aa9.07□□□□□ -0.96
TNFSF4-201ENST00000281834 TDRD9Q8NDG6 1382 aaKnown RBP9.06□□□□□ -0.96
TNFSF4-201ENST00000281834 BIVM-ERCC5R4GMW8 1640 aa9.06□□□□□ -0.96
TNFSF4-201ENST00000281834 ARAP1Q96P48 1450 aa9.04□□□□□ -0.96
TNFSF4-201ENST00000281834 ARID3CA6NKF2 412 aa9.04□□□□□ -0.96
TNFSF4-201ENST00000281834 FAM50AQ14320 339 aaKnown RBP9.02□□□□□ -0.97
TNFSF4-201ENST00000281834 POLA1P09884 1462 aaPredicted RBP8.99□□□□□ -0.97
TNFSF4-201ENST00000281834 ARHGAP35Q9NRY4 1499 aa8.99□□□□□ -0.97
TNFSF4-201ENST00000281834 ERICH3Q5RHP9 1530 aa8.98□□□□□ -0.97
TNFSF4-201ENST00000281834 TOPBP1Q92547 1522 aa8.98□□□□□ -0.97
TNFSF4-201ENST00000281834 DIEXFQ68CQ4 756 aaKnown RBP8.98□□□□□ -0.97
TNFSF4-201ENST00000281834 FHOD3Q2V2M9 1422 aa8.97□□□□□ -0.97
TNFSF4-201ENST00000281834 FBLN2P98095 1184 aa8.96□□□□□ -0.98
TNFSF4-201ENST00000281834 PDS5BQ9NTI5 1447 aa8.95□□□□□ -0.98
TNFSF4-201ENST00000281834 URB2Q14146 1524 aaKnown RBP8.94□□□□□ -0.98
TNFSF4-201ENST00000281834 YTHDC1Q96MU7 727 aaKnown RBP8.93□□□□□ -0.98
TNFSF4-201ENST00000281834 DNMBPQ6XZF7 1577 aa8.92□□□□□ -0.98
TNFSF4-201ENST00000281834 CCNB3Q8WWL7 1395 aa8.91□□□□□ -0.98
TNFSF4-201ENST00000281834 AQRO60306 1485 aaKnown RBP eCLIP8.9□□□□□ -0.98
TNFSF4-201ENST00000281834 ZNF316A6NFI3 1004 aaPredicted RBP8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms