RNA–Protein interactions for RNA: ENSMUST00000213114.1

Ldlr-202, Transcript of Low-density lipoprotein receptor, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Ldlr, Length 4,318 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ldlr-202ENSMUST00000213114 Rhox8Q6VSS7 320 aa17.09■□□□□ 0.33
Ldlr-202ENSMUST00000213114 NischQ80TM9 1593 aa16.02■□□□□ 0.16
Ldlr-202ENSMUST00000213114 Ccdc136Q3TVA9 1136 aa15.48■□□□□ 0.07
Ldlr-202ENSMUST00000213114 Gm35339A0A140LHH9 1649 aa15.46■□□□□ 0.07
Ldlr-202ENSMUST00000213114 Ehmt2Q9Z148 1263 aaKnown RBP15.42■□□□□ 0.06
Ldlr-202ENSMUST00000213114 Abcc9P70170 1546 aa15.29■□□□□ 0.04
Ldlr-202ENSMUST00000213114 Rpgrip1Q9EPQ2 1331 aa15.25■□□□□ 0.03
Ldlr-202ENSMUST00000213114 Abcc8B2RUS7 1588 aa15.08■□□□□ 0
Ldlr-202ENSMUST00000213114 Esf1Q3V1V3 845 aaKnown RBP15.08■□□□□ 0
Ldlr-202ENSMUST00000213114 Cngb1E1AZ71 1325 aa15.05■□□□□ -0
Ldlr-202ENSMUST00000213114 Trim41Q5NCC3 630 aa15□□□□□ -0.01
Ldlr-202ENSMUST00000213114 Gab3Q8BSM5 595 aa14.93□□□□□ -0.02
Ldlr-202ENSMUST00000213114 Ccdc180J3QNE4 1664 aa14.7□□□□□ -0.06
Ldlr-202ENSMUST00000213114 HrcG5E8J6 738 aa14.65□□□□□ -0.06
Ldlr-202ENSMUST00000213114 Acin1Q9JIX8 1338 aaKnown RBP14.64□□□□□ -0.07
Ldlr-202ENSMUST00000213114 Zeb1Q64318 1117 aa14.62□□□□□ -0.07
Ldlr-202ENSMUST00000213114 Npm2Q80W85 207 aa14.61□□□□□ -0.07
Ldlr-202ENSMUST00000213114 Myt1lP97500 1187 aa14.57□□□□□ -0.08
Ldlr-202ENSMUST00000213114 Rtl1Q7M732 1744 aa14.55□□□□□ -0.08
Ldlr-202ENSMUST00000213114 Las1lA2BE28 776 aaKnown RBP14.52□□□□□ -0.08
Ldlr-202ENSMUST00000213114 Zcchc6Q5BLK4 1491 aaKnown RBP14.5□□□□□ -0.09
Ldlr-202ENSMUST00000213114 Wdr66E9Q743 1299 aa14.49□□□□□ -0.09
Ldlr-202ENSMUST00000213114 Ube2uB1AUC4 352 aa14.36□□□□□ -0.11
Ldlr-202ENSMUST00000213114 UbtfP25976 765 aaKnown RBP14.35□□□□□ -0.11
Ldlr-202ENSMUST00000213114 Il27Q8K3I6 234 aa14.32□□□□□ -0.12
Ldlr-202ENSMUST00000213114 NefmP08553 848 aa14.24□□□□□ -0.13
Ldlr-202ENSMUST00000213114 Pcgf6Q99NA9 353 aa14.17□□□□□ -0.14
Ldlr-202ENSMUST00000213114 NacadQ5SWP3 1504 aa14.11□□□□□ -0.15
Ldlr-202ENSMUST00000213114 Rb1cc1Q9ESK9 1588 aa14.03□□□□□ -0.16
Ldlr-202ENSMUST00000213114 Dcaf1Q80TR8 1506 aa14□□□□□ -0.17
Ldlr-202ENSMUST00000213114 Chic1Q8CBW7 227 aa13.98□□□□□ -0.17
Ldlr-202ENSMUST00000213114 Supt5hO55201 1082 aaKnown RBP13.98□□□□□ -0.17
Ldlr-202ENSMUST00000213114 Ap3b1Q9Z1T1 1105 aa13.96□□□□□ -0.18
Ldlr-202ENSMUST00000213114 Kdm5dQ62240 1548 aa13.95□□□□□ -0.18
Ldlr-202ENSMUST00000213114 Mier1Q5UAK0 511 aa13.95□□□□□ -0.18
Ldlr-202ENSMUST00000213114 Ppargc1bQ8VHJ7 1014 aa13.91□□□□□ -0.18
Ldlr-202ENSMUST00000213114 ScribQ80U72 1612 aa13.9□□□□□ -0.18
Ldlr-202ENSMUST00000213114 CenpbP27790 599 aa13.86□□□□□ -0.19
Ldlr-202ENSMUST00000213114 Brd4Q9ESU6 1400 aaKnown RBP13.85□□□□□ -0.19
Ldlr-202ENSMUST00000213114 Pelp1Q9DBD5 1123 aaKnown RBP13.84□□□□□ -0.19
Ldlr-202ENSMUST00000213114 Cep164Q5DU05 1446 aa13.84□□□□□ -0.19
Ldlr-202ENSMUST00000213114 Fam50aQ9WV03 339 aaKnown RBP13.82□□□□□ -0.2
Ldlr-202ENSMUST00000213114 Baz1aO88379 1555 aa13.8□□□□□ -0.2
Ldlr-202ENSMUST00000213114 Plekhg3Q4VAC9 1341 aa13.78□□□□□ -0.2
Ldlr-202ENSMUST00000213114 Cdk11bP24788 784 aaKnown RBP13.77□□□□□ -0.2
Ldlr-202ENSMUST00000213114 Npm1Q61937 292 aaKnown RBP13.76□□□□□ -0.21
Ldlr-202ENSMUST00000213114 Slc24a1Q91WD8 1130 aa13.71□□□□□ -0.21
Ldlr-202ENSMUST00000213114 Nop58Q6DFW4 536 aaKnown RBP13.71□□□□□ -0.21
Ldlr-202ENSMUST00000213114 TonslQ6NZL6 1363 aa13.71□□□□□ -0.22
Ldlr-202ENSMUST00000213114 NclP09405 707 aaKnown RBP13.66□□□□□ -0.22
Ldlr-202ENSMUST00000213114 Sycp2Q9CUU3 1500 aa13.65□□□□□ -0.22
Ldlr-202ENSMUST00000213114 Lmod2Q3UHZ5 550 aa13.64□□□□□ -0.23
Ldlr-202ENSMUST00000213114 Myt1Q8CFC2 1127 aa13.62□□□□□ -0.23
Ldlr-202ENSMUST00000213114 Neurod1Q60867 357 aa13.61□□□□□ -0.23
Ldlr-202ENSMUST00000213114 Stra8P70278 393 aa13.59□□□□□ -0.23
Ldlr-202ENSMUST00000213114 Sall2Q9QX96 1004 aa13.56□□□□□ -0.24
Ldlr-202ENSMUST00000213114 Clip1Q922J3 1391 aa13.56□□□□□ -0.24
Ldlr-202ENSMUST00000213114 Eid3Q3V124 375 aa13.56□□□□□ -0.24
Ldlr-202ENSMUST00000213114 Rsf1E9PWW9 1441 aaKnown RBP13.52□□□□□ -0.25
Ldlr-202ENSMUST00000213114 Crybg2B7ZCC2 1516 aa13.51□□□□□ -0.25
Ldlr-202ENSMUST00000213114 Golga3P55937 1487 aa13.51□□□□□ -0.25
Ldlr-202ENSMUST00000213114 Ubl4bQ9CQ84 188 aa13.51□□□□□ -0.25
Ldlr-202ENSMUST00000213114 Amer1Q7TS75 1132 aa13.5□□□□□ -0.25
Ldlr-202ENSMUST00000213114 ClspnQ80YR7 1315 aa13.49□□□□□ -0.25
Ldlr-202ENSMUST00000213114 Zbtb7cQ8VCZ7 619 aa13.43□□□□□ -0.26
Ldlr-202ENSMUST00000213114 Mapk8ip2Q9ERE9 830 aa13.43□□□□□ -0.26
Ldlr-202ENSMUST00000213114 Ifnlr1Q8CGK5 535 aa13.39□□□□□ -0.27
Ldlr-202ENSMUST00000213114 NrdcQ8BHG1 1161 aa13.37□□□□□ -0.27
Ldlr-202ENSMUST00000213114 Ccdc88bQ4QRL3 1481 aa13.36□□□□□ -0.27
Ldlr-202ENSMUST00000213114 Tnnt3Q9QZ47 272 aa13.36□□□□□ -0.27
Ldlr-202ENSMUST00000213114 Fkbp15Q6P9Q6 1216 aaKnown RBP13.35□□□□□ -0.27
Ldlr-202ENSMUST00000213114 Eif5bQ05D44 1216 aaKnown RBP13.34□□□□□ -0.27
Ldlr-202ENSMUST00000213114 Os9Q8K2C7 672 aa13.33□□□□□ -0.27
Ldlr-202ENSMUST00000213114 Pds5bQ4VA53 1446 aaKnown RBP13.31□□□□□ -0.28
Ldlr-202ENSMUST00000213114 Hnrnpul2Q00PI9 745 aaKnown RBP13.29□□□□□ -0.28
Ldlr-202ENSMUST00000213114 Aebp2Q9Z248 504 aaKnown RBP13.28□□□□□ -0.28
Ldlr-202ENSMUST00000213114 BlmO88700 1416 aa13.27□□□□□ -0.29
Ldlr-202ENSMUST00000213114 Setd5Q5XJV7 1441 aa13.27□□□□□ -0.29
Ldlr-202ENSMUST00000213114 Smarca2Q6DIC0 1577 aa13.26□□□□□ -0.29
Ldlr-202ENSMUST00000213114 Kif15Q6P9L6 1387 aa13.26□□□□□ -0.29
Ldlr-202ENSMUST00000213114 DiexfQ8BTT6 772 aaKnown RBP13.25□□□□□ -0.29
Ldlr-202ENSMUST00000213114 Ttbk1Q6PCN3 1308 aa13.25□□□□□ -0.29
Ldlr-202ENSMUST00000213114 Cecr2E9Q2Z1 1453 aa13.24□□□□□ -0.29
Ldlr-202ENSMUST00000213114 Ercc6F8VPZ5 1481 aa13.24□□□□□ -0.29
Ldlr-202ENSMUST00000213114 Anks4bQ8K3X6 423 aa13.23□□□□□ -0.29
Ldlr-202ENSMUST00000213114 Anp32bQ9EST5 272 aaKnown RBP13.22□□□□□ -0.29
Ldlr-202ENSMUST00000213114 Csrnp3P59055 597 aa13.21□□□□□ -0.29
Ldlr-202ENSMUST00000213114 Chic2Q9D9G3 165 aa13.21□□□□□ -0.29
Ldlr-202ENSMUST00000213114 Gm38655A0A286YDK6 273 aa13.2□□□□□ -0.3
Ldlr-202ENSMUST00000213114 Zbtb4Q5F293 982 aa13.18□□□□□ -0.3
Ldlr-202ENSMUST00000213114 Ccer2J3QPU5 274 aa13.15□□□□□ -0.31
Ldlr-202ENSMUST00000213114 CftrP26361 1476 aa13.14□□□□□ -0.31
Ldlr-202ENSMUST00000213114 Atad2bE9Q166 1460 aaKnown RBP13.13□□□□□ -0.31
Ldlr-202ENSMUST00000213114 Eea1Q8BL66 1411 aa13.13□□□□□ -0.31
Ldlr-202ENSMUST00000213114 Erich6D3Z6S9 713 aa13.12□□□□□ -0.31
Ldlr-202ENSMUST00000213114 Cep162Q6ZQ06 1403 aa13.09□□□□□ -0.31
Ldlr-202ENSMUST00000213114 Smarca4Q3TKT4 1613 aaKnown RBP13.08□□□□□ -0.31
Ldlr-202ENSMUST00000213114 Fmn1Q05860 1466 aa13.06□□□□□ -0.32
Ldlr-202ENSMUST00000213114 BicraF8VPZ9 1578 aa13.06□□□□□ -0.32
Ldlr-202ENSMUST00000213114 NeflP08551 543 aa13.05□□□□□ -0.32
Retrieved 100 of 22,080 RNA–protein pairs in 75.8 ms