RNA–Protein interactions for RNA: ENSMUST00000210061.1

Clcn4-203, Transcript of H(+)/Cl(-) exchange transporter 4, mousemouse

APPRIS ALT2 TSL 1 (best) BASIC

Gene Clcn4, Length 2,445 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn4-203ENSMUST00000210061 NischQ80TM9 1593 aa25.27■■□□□ 1.64
Clcn4-203ENSMUST00000210061 Gm35339A0A140LHH9 1649 aa24.64■■□□□ 1.54
Clcn4-203ENSMUST00000210061 Abcc9P70170 1546 aa24.57■■□□□ 1.52
Clcn4-203ENSMUST00000210061 Abcc8B2RUS7 1588 aa23.9■■□□□ 1.42
Clcn4-203ENSMUST00000210061 Rtl1Q7M732 1744 aa23.81■■□□□ 1.4
Clcn4-203ENSMUST00000210061 Rhox8Q6VSS7 320 aa23.8■■□□□ 1.4
Clcn4-203ENSMUST00000210061 Ccdc180J3QNE4 1664 aa23.46■■□□□ 1.35
Clcn4-203ENSMUST00000210061 Rpgrip1Q9EPQ2 1331 aa22.95■■□□□ 1.26
Clcn4-203ENSMUST00000210061 Zcchc6Q5BLK4 1491 aaKnown RBP22.88■■□□□ 1.25
Clcn4-203ENSMUST00000210061 Acin1Q9JIX8 1338 aaKnown RBP22.42■■□□□ 1.18
Clcn4-203ENSMUST00000210061 Dcaf1Q80TR8 1506 aa22.39■■□□□ 1.17
Clcn4-203ENSMUST00000210061 HrcG5E8J6 738 aa22.33■■□□□ 1.17
Clcn4-203ENSMUST00000210061 Rb1cc1Q9ESK9 1588 aa22.18■■□□□ 1.14
Clcn4-203ENSMUST00000210061 ScribQ80U72 1612 aa22.07■■□□□ 1.12
Clcn4-203ENSMUST00000210061 Ehmt2Q9Z148 1263 aaKnown RBP22.06■■□□□ 1.12
Clcn4-203ENSMUST00000210061 Ccdc136Q3TVA9 1136 aa22.03■■□□□ 1.12
Clcn4-203ENSMUST00000210061 Baz1aO88379 1555 aa21.93■■□□□ 1.1
Clcn4-203ENSMUST00000210061 Kdm5dQ62240 1548 aa21.76■■□□□ 1.07
Clcn4-203ENSMUST00000210061 Trim41Q5NCC3 630 aa21.75■■□□□ 1.07
Clcn4-203ENSMUST00000210061 Pcgf6Q99NA9 353 aa21.69■■□□□ 1.06
Clcn4-203ENSMUST00000210061 Cep164Q5DU05 1446 aa21.56■■□□□ 1.04
Clcn4-203ENSMUST00000210061 NacadQ5SWP3 1504 aa21.54■■□□□ 1.04
Clcn4-203ENSMUST00000210061 Smarca2Q6DIC0 1577 aa21.48■■□□□ 1.03
Clcn4-203ENSMUST00000210061 Crybg2B7ZCC2 1516 aa21.46■■□□□ 1.03
Clcn4-203ENSMUST00000210061 Supt5hO55201 1082 aaKnown RBP21.23■□□□□ 0.99
Clcn4-203ENSMUST00000210061 Rsf1E9PWW9 1441 aaKnown RBP21.13■□□□□ 0.97
Clcn4-203ENSMUST00000210061 Chic1Q8CBW7 227 aa21.07■□□□□ 0.96
Clcn4-203ENSMUST00000210061 Sycp2Q9CUU3 1500 aa21.06■□□□□ 0.96
Clcn4-203ENSMUST00000210061 Cngb1E1AZ71 1325 aa21.04■□□□□ 0.96
Clcn4-203ENSMUST00000210061 Brd4Q9ESU6 1400 aaKnown RBP21■□□□□ 0.95
Clcn4-203ENSMUST00000210061 Gab3Q8BSM5 595 aa20.97■□□□□ 0.95
Clcn4-203ENSMUST00000210061 NefmP08553 848 aa20.92■□□□□ 0.94
Clcn4-203ENSMUST00000210061 Ccdc88bQ4QRL3 1481 aa20.92■□□□□ 0.94
Clcn4-203ENSMUST00000210061 Golga3P55937 1487 aa20.91■□□□□ 0.94
Clcn4-203ENSMUST00000210061 Cecr2E9Q2Z1 1453 aa20.85■□□□□ 0.93
Clcn4-203ENSMUST00000210061 Neurod1Q60867 357 aa20.83■□□□□ 0.93
Clcn4-203ENSMUST00000210061 Zeb1Q64318 1117 aa20.83■□□□□ 0.93
Clcn4-203ENSMUST00000210061 Mier1Q5UAK0 511 aa20.82■□□□□ 0.92
Clcn4-203ENSMUST00000210061 Synj1Q8CHC4 1574 aa20.77■□□□□ 0.91
Clcn4-203ENSMUST00000210061 Sall2Q9QX96 1004 aa20.62■□□□□ 0.89
Clcn4-203ENSMUST00000210061 CftrP26361 1476 aa20.61■□□□□ 0.89
Clcn4-203ENSMUST00000210061 Top2bQ64511 1612 aa20.6■□□□□ 0.89
Clcn4-203ENSMUST00000210061 Esf1Q3V1V3 845 aaKnown RBP20.55■□□□□ 0.88
Clcn4-203ENSMUST00000210061 BicraF8VPZ9 1578 aa20.53■□□□□ 0.88
Clcn4-203ENSMUST00000210061 Las1lA2BE28 776 aaKnown RBP20.48■□□□□ 0.87
Clcn4-203ENSMUST00000210061 Cttnbp2B9EJA2 1648 aa20.45■□□□□ 0.86
Clcn4-203ENSMUST00000210061 Rapgef2Q8CHG7 1496 aa20.41■□□□□ 0.86
Clcn4-203ENSMUST00000210061 UbtfP25976 765 aaKnown RBP20.37■□□□□ 0.85
Clcn4-203ENSMUST00000210061 Cc2d2aQ8CFW7 1633 aa20.37■□□□□ 0.85
Clcn4-203ENSMUST00000210061 Anks4bQ8K3X6 423 aa20.36■□□□□ 0.85
Clcn4-203ENSMUST00000210061 Fmn1Q05860 1466 aa20.28■□□□□ 0.84
Clcn4-203ENSMUST00000210061 Aebp2Q9Z248 504 aaKnown RBP20.27■□□□□ 0.84
Clcn4-203ENSMUST00000210061 Top2aQ01320 1528 aaKnown RBP20.26■□□□□ 0.83
Clcn4-203ENSMUST00000210061 Wdr66E9Q743 1299 aa20.26■□□□□ 0.83
Clcn4-203ENSMUST00000210061 Cep162Q6ZQ06 1403 aa20.23■□□□□ 0.83
Clcn4-203ENSMUST00000210061 Smarca4Q3TKT4 1613 aaKnown RBP20.23■□□□□ 0.83
Clcn4-203ENSMUST00000210061 ClspnQ80YR7 1315 aa20.2■□□□□ 0.82
Clcn4-203ENSMUST00000210061 1700123L14RikQ3V2K7 440 aa20.14■□□□□ 0.81
Clcn4-203ENSMUST00000210061 Csrnp3P59055 597 aa20.12■□□□□ 0.81
Clcn4-203ENSMUST00000210061 Myt1lP97500 1187 aa20.12■□□□□ 0.81
Clcn4-203ENSMUST00000210061 Cdk11bP24788 784 aaKnown RBP20.12■□□□□ 0.81
Clcn4-203ENSMUST00000210061 Nop58Q6DFW4 536 aaKnown RBP20.09■□□□□ 0.81
Clcn4-203ENSMUST00000210061 TonslQ6NZL6 1363 aa20.06■□□□□ 0.8
Clcn4-203ENSMUST00000210061 Clip1Q922J3 1391 aa20■□□□□ 0.79
Clcn4-203ENSMUST00000210061 Npm2Q80W85 207 aa20■□□□□ 0.79
Clcn4-203ENSMUST00000210061 Eif4g1Q6NZJ6 1600 aaKnown RBP20■□□□□ 0.79
Clcn4-203ENSMUST00000210061 Ncapd3Q6ZQK0 1506 aa19.95■□□□□ 0.78
Clcn4-203ENSMUST00000210061 Ppargc1bQ8VHJ7 1014 aa19.94■□□□□ 0.78
Clcn4-203ENSMUST00000210061 Plekhg3Q4VAC9 1341 aa19.93■□□□□ 0.78
Clcn4-203ENSMUST00000210061 Iqgap2Q3UQ44 1575 aa19.92■□□□□ 0.78
Clcn4-203ENSMUST00000210061 Aplp2Q06335 707 aa19.91■□□□□ 0.78
Clcn4-203ENSMUST00000210061 TnnQ80Z71 1560 aa19.8■□□□□ 0.76
Clcn4-203ENSMUST00000210061 Arhgap35Q91YM2 1499 aa19.78■□□□□ 0.76
Clcn4-203ENSMUST00000210061 Eea1Q8BL66 1411 aa19.73■□□□□ 0.75
Clcn4-203ENSMUST00000210061 CenpbP27790 599 aa19.72■□□□□ 0.75
Clcn4-203ENSMUST00000210061 Arap1Q4LDD4 1452 aa19.72■□□□□ 0.75
Clcn4-203ENSMUST00000210061 Atad2bE9Q166 1460 aaKnown RBP19.72■□□□□ 0.75
Clcn4-203ENSMUST00000210061 NrkQ9R0G8 1455 aa19.71■□□□□ 0.75
Clcn4-203ENSMUST00000210061 Kdm5bQ80Y84 1544 aa19.69■□□□□ 0.74
Clcn4-203ENSMUST00000210061 PtprkP35822 1457 aa19.67■□□□□ 0.74
Clcn4-203ENSMUST00000210061 Arhgef5E9Q7D5 1581 aa19.65■□□□□ 0.74
Clcn4-203ENSMUST00000210061 Ccdc18Q640L5 1455 aa19.65■□□□□ 0.74
Clcn4-203ENSMUST00000210061 Myt1Q8CFC2 1127 aa19.63■□□□□ 0.73
Clcn4-203ENSMUST00000210061 Setd5Q5XJV7 1441 aa19.6■□□□□ 0.73
Clcn4-203ENSMUST00000210061 Eid3Q3V124 375 aa19.59■□□□□ 0.73
Clcn4-203ENSMUST00000210061 Map3k1P53349 1493 aa19.57■□□□□ 0.72
Clcn4-203ENSMUST00000210061 Ap3b1Q9Z1T1 1105 aa19.56■□□□□ 0.72
Clcn4-203ENSMUST00000210061 Shroom4Q1W617 1475 aa19.55■□□□□ 0.72
Clcn4-203ENSMUST00000210061 Gm38655A0A286YDK6 273 aa19.54■□□□□ 0.72
Clcn4-203ENSMUST00000210061 TchhA0A0B4J1F9 1599 aa19.54■□□□□ 0.72
Clcn4-203ENSMUST00000210061 Pds5bQ4VA53 1446 aaKnown RBP19.53■□□□□ 0.72
Clcn4-203ENSMUST00000210061 Lamc3Q9R0B6 1581 aa19.53■□□□□ 0.72
Clcn4-203ENSMUST00000210061 Tiam1Q60610 1591 aa19.52■□□□□ 0.72
Clcn4-203ENSMUST00000210061 Baz1bQ9Z277 1479 aa19.51■□□□□ 0.71
Clcn4-203ENSMUST00000210061 Frmpd1A2AKB4 1549 aa19.48■□□□□ 0.71
Clcn4-203ENSMUST00000210061 Tnnt3Q9QZ47 272 aa19.47■□□□□ 0.71
Clcn4-203ENSMUST00000210061 Camsap1A2AHC3 1581 aa19.46■□□□□ 0.71
Clcn4-203ENSMUST00000210061 Il27Q8K3I6 234 aa19.45■□□□□ 0.7
Clcn4-203ENSMUST00000210061 Wdr62Q3U3T8 1523 aa19.45■□□□□ 0.7
Clcn4-203ENSMUST00000210061 Naip1Q9QWK5 1403 aa19.44■□□□□ 0.7
Retrieved 100 of 22,080 RNA–protein pairs in 15.6 ms