RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 Rhox8Q6VSS7 320 aa28,35■■■□□ 2,13
Ccdc88a-201ENSMUST00000040182 Rpgrip1Q9EPQ2 1331 aa27,47■■□□□ 1,99
Ccdc88a-201ENSMUST00000040182 Cngb1E1AZ71 1325 aa26,83■■□□□ 1,89
Ccdc88a-201ENSMUST00000040182 Las1lA2BE28 776 aaKnown RBP26,59■■□□□ 1,85
Ccdc88a-201ENSMUST00000040182 Pelp1Q9DBD5 1123 aaKnown RBP26,38■■□□□ 1,81
Ccdc88a-201ENSMUST00000040182 Rtl1Q7M732 1744 aa25,76■■□□□ 1,71
Ccdc88a-201ENSMUST00000040182 Wdr66E9Q743 1299 aa25,43■■□□□ 1,66
Ccdc88a-201ENSMUST00000040182 Ehmt2Q9Z148 1263 aaKnown RBP25,29■■□□□ 1,64
Ccdc88a-201ENSMUST00000040182 Ccdc180J3QNE4 1664 aa25,18■■□□□ 1,62
Ccdc88a-201ENSMUST00000040182 Ube2uB1AUC4 352 aa25,16■■□□□ 1,62
Ccdc88a-201ENSMUST00000040182 Esf1Q3V1V3 845 aaKnown RBP25,1■■□□□ 1,61
Ccdc88a-201ENSMUST00000040182 Stra8P70278 393 aa25,04■■□□□ 1,6
Ccdc88a-201ENSMUST00000040182 Zeb1Q64318 1117 aa25,01■■□□□ 1,59
Ccdc88a-201ENSMUST00000040182 CenpbP27790 599 aa24,98■■□□□ 1,59
Ccdc88a-201ENSMUST00000040182 Trim41Q5NCC3 630 aa24,93■■□□□ 1,58
Ccdc88a-201ENSMUST00000040182 Ccdc136Q3TVA9 1136 aa24,85■■□□□ 1,57
Ccdc88a-201ENSMUST00000040182 Amer1Q7TS75 1132 aa24,82■■□□□ 1,56
Ccdc88a-201ENSMUST00000040182 NischQ80TM9 1593 aa24,8■■□□□ 1,56
Ccdc88a-201ENSMUST00000040182 Npm2Q80W85 207 aa24,74■■□□□ 1,55
Ccdc88a-201ENSMUST00000040182 NefmP08553 848 aa24,69■■□□□ 1,54
Ccdc88a-201ENSMUST00000040182 Myt1Q8CFC2 1127 aa24,56■■□□□ 1,52
Ccdc88a-201ENSMUST00000040182 Acin1Q9JIX8 1338 aaKnown RBP24,54■■□□□ 1,52
Ccdc88a-201ENSMUST00000040182 4930567H17RikQ3V0K5 233 aa24,52■■□□□ 1,52
Ccdc88a-201ENSMUST00000040182 Gab3Q8BSM5 595 aa24,44■■□□□ 1,5
Ccdc88a-201ENSMUST00000040182 Myt1lP97500 1187 aa24,31■■□□□ 1,48
Ccdc88a-201ENSMUST00000040182 Tnnt3Q9QZ47 272 aa24,11■■□□□ 1,45
Ccdc88a-201ENSMUST00000040182 Anp32bQ9EST5 272 aaKnown RBP24,04■■□□□ 1,44
Ccdc88a-201ENSMUST00000040182 NeflP08551 543 aa24■■□□□ 1,43
Ccdc88a-201ENSMUST00000040182 Cdk11bP24788 784 aaKnown RBP23,94■■□□□ 1,42
Ccdc88a-201ENSMUST00000040182 UbtfP25976 765 aaKnown RBP23,93■■□□□ 1,42
Ccdc88a-201ENSMUST00000040182 Slc24a1Q91WD8 1130 aa23,87■■□□□ 1,41
Ccdc88a-201ENSMUST00000040182 Rtl5Q5DTT4 599 aa23,84■■□□□ 1,41
Ccdc88a-201ENSMUST00000040182 NrdcQ8BHG1 1161 aa23,84■■□□□ 1,41
Ccdc88a-201ENSMUST00000040182 4933416C03RikQ3V063 378 aa23,81■■□□□ 1,4
Ccdc88a-201ENSMUST00000040182 HrcG5E8J6 738 aa23,75■■□□□ 1,39
Ccdc88a-201ENSMUST00000040182 Ttbk1Q6PCN3 1308 aa23,74■■□□□ 1,39
Ccdc88a-201ENSMUST00000040182 Nop58Q6DFW4 536 aaKnown RBP23,53■■□□□ 1,36
Ccdc88a-201ENSMUST00000040182 NclP09405 707 aaKnown RBP23,49■■□□□ 1,35
Ccdc88a-201ENSMUST00000040182 Pcgf6Q99NA9 353 aa23,43■■□□□ 1,34
Ccdc88a-201ENSMUST00000040182 Fam50aQ9WV03 339 aaKnown RBP23,3■■□□□ 1,32
Ccdc88a-201ENSMUST00000040182 TonslQ6NZL6 1363 aa23,26■■□□□ 1,31
Ccdc88a-201ENSMUST00000040182 Os9Q8K2C7 672 aa23,23■■□□□ 1,31
Ccdc88a-201ENSMUST00000040182 Eif5bQ05D44 1216 aaKnown RBP23,18■■□□□ 1,3
Ccdc88a-201ENSMUST00000040182 Zcchc6Q5BLK4 1491 aaKnown RBP23,13■■□□□ 1,29
Ccdc88a-201ENSMUST00000040182 Neurod1Q60867 357 aa23,09■■□□□ 1,29
Ccdc88a-201ENSMUST00000040182 Il27Q8K3I6 234 aa23,06■■□□□ 1,28
Ccdc88a-201ENSMUST00000040182 Anp32aO35381 247 aa22,99■■□□□ 1,27
Ccdc88a-201ENSMUST00000040182 ClspnQ80YR7 1315 aa22,91■■□□□ 1,26
Ccdc88a-201ENSMUST00000040182 Hdac5Q9Z2V6 1113 aa22,89■■□□□ 1,25
Ccdc88a-201ENSMUST00000040182 Abcc9P70170 1546 aa22,86■■□□□ 1,25
Ccdc88a-201ENSMUST00000040182 DiexfQ8BTT6 772 aaKnown RBP22,82■■□□□ 1,24
Ccdc88a-201ENSMUST00000040182 Ap3b1Q9Z1T1 1105 aa22,82■■□□□ 1,24
Ccdc88a-201ENSMUST00000040182 Supt5hO55201 1082 aaKnown RBP22,8■■□□□ 1,24
Ccdc88a-201ENSMUST00000040182 DaxxO35613 739 aa22,78■■□□□ 1,24
Ccdc88a-201ENSMUST00000040182 Mier1Q5UAK0 511 aa22,63■■□□□ 1,21
Ccdc88a-201ENSMUST00000040182 Nlrp6Q91WS2 869 aa22,58■■□□□ 1,21
Ccdc88a-201ENSMUST00000040182 Ccdc9Q8VC31 543 aaKnown RBP22,54■■□□□ 1,2
Ccdc88a-201ENSMUST00000040182 Upf2A2AT37 1269 aaKnown RBP22,5■■□□□ 1,19
Ccdc88a-201ENSMUST00000040182 Gm35339A0A140LHH9 1649 aa22,47■■□□□ 1,19
Ccdc88a-201ENSMUST00000040182 Dcaf1Q80TR8 1506 aa22,44■■□□□ 1,18
Ccdc88a-201ENSMUST00000040182 Ppargc1bQ8VHJ7 1014 aa22,4■■□□□ 1,18
Ccdc88a-201ENSMUST00000040182 Gm13697A2AK42 830 aa22,4■■□□□ 1,18
Ccdc88a-201ENSMUST00000040182 Ythdc1E9Q5K9 736 aaKnown RBP22,4■■□□□ 1,18
Ccdc88a-201ENSMUST00000040182 Ccer2J3QPU5 274 aa22,4■■□□□ 1,18
Ccdc88a-201ENSMUST00000040182 Brd4Q9ESU6 1400 aaKnown RBP22,37■■□□□ 1,17
Ccdc88a-201ENSMUST00000040182 CatipB9EKE5 520 aa22,36■■□□□ 1,17
Ccdc88a-201ENSMUST00000040182 Hnrnpul2Q00PI9 745 aaKnown RBP22,35■■□□□ 1,17
Ccdc88a-201ENSMUST00000040182 Npm1Q61937 292 aaKnown RBP22,33■■□□□ 1,17
Ccdc88a-201ENSMUST00000040182 Anks4bQ8K3X6 423 aa22,31■■□□□ 1,16
Ccdc88a-201ENSMUST00000040182 Aplp2Q06335 707 aa22,29■■□□□ 1,16
Ccdc88a-201ENSMUST00000040182 Cep164Q5DU05 1446 aa22,25■■□□□ 1,15
Ccdc88a-201ENSMUST00000040182 Hsp90aa1P07901 733 aaKnown RBP22,23■■□□□ 1,15
Ccdc88a-201ENSMUST00000040182 Plekhg3Q4VAC9 1341 aa22,21■■□□□ 1,15
Ccdc88a-201ENSMUST00000040182 Polr3glQ8R0C0 218 aa22,2■■□□□ 1,14
Ccdc88a-201ENSMUST00000040182 Rb1cc1Q9ESK9 1588 aa22,16■■□□□ 1,14
Ccdc88a-201ENSMUST00000040182 Erich6D3Z6S9 713 aa22,14■■□□□ 1,13
Ccdc88a-201ENSMUST00000040182 Atp1b4Q99ME6 356 aa22,13■■□□□ 1,13
Ccdc88a-201ENSMUST00000040182 Zbtb7cQ8VCZ7 619 aa22,12■■□□□ 1,13
Ccdc88a-201ENSMUST00000040182 Calr4Q3TQS0 420 aa22,12■■□□□ 1,13
Ccdc88a-201ENSMUST00000040182 Lmod2Q3UHZ5 550 aa22,12■■□□□ 1,13
Ccdc88a-201ENSMUST00000040182 Clip1Q922J3 1391 aa22,1■■□□□ 1,13
Ccdc88a-201ENSMUST00000040182 Gm13695A2AK44 830 aa22,08■■□□□ 1,13
Ccdc88a-201ENSMUST00000040182 Abcc8B2RUS7 1588 aa22,05■■□□□ 1,12
Ccdc88a-201ENSMUST00000040182 Chic1Q8CBW7 227 aa22,02■■□□□ 1,11
Ccdc88a-201ENSMUST00000040182 Trim44Q9QXA7 346 aa22■■□□□ 1,11
Ccdc88a-201ENSMUST00000040182 Wdr43Q6ZQL4 677 aaKnown RBP22■■□□□ 1,11
Ccdc88a-201ENSMUST00000040182 ArxO35085 564 aa21,97■■□□□ 1,11
Ccdc88a-201ENSMUST00000040182 Ppp4r2Q0VGB7 417 aa21,96■■□□□ 1,11
Ccdc88a-201ENSMUST00000040182 DekQ7TNV0 380 aaKnown RBP21,92■■□□□ 1,1
Ccdc88a-201ENSMUST00000040182 Csrnp3P59055 597 aa21,91■■□□□ 1,1
Ccdc88a-201ENSMUST00000040182 Clstn2Q9ER65 966 aa21,91■■□□□ 1,1
Ccdc88a-201ENSMUST00000040182 Zbtb4Q5F293 982 aa21,85■■□□□ 1,09
Ccdc88a-201ENSMUST00000040182 Adam1bQ8R534 806 aa21,83■■□□□ 1,09
Ccdc88a-201ENSMUST00000040182 Htatsf1Q8BGC0 757 aa21,83■■□□□ 1,08
Ccdc88a-201ENSMUST00000040182 Eid3Q3V124 375 aa21,78■■□□□ 1,08
Ccdc88a-201ENSMUST00000040182 Lmod3E9QA62 571 aa21,74■■□□□ 1,07
Ccdc88a-201ENSMUST00000040182 Fgd1P52734 960 aa21,74■■□□□ 1,07
Ccdc88a-201ENSMUST00000040182 Hsp90ab1P11499 724 aaKnown RBP21,73■■□□□ 1,07
Ccdc88a-201ENSMUST00000040182 Prdm10Q3UTQ7 1184 aa21,73■■□□□ 1,07
Ccdc88a-201ENSMUST00000040182 Sall2Q9QX96 1004 aa21,72■■□□□ 1,07
Retrieved 100 of 22,080 RNA–protein pairs in 16,9 ms