RNA–Protein interactions for RNA: ENSMUST00000033158.5

Ubfd1-201, Transcript of Ubiquitin domain-containing protein UBFD1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ubfd1, Length 4,849 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ubfd1-201ENSMUST00000033158 Rhox8Q6VSS7 320 aa29.64■■■□□ 2.34
Ubfd1-201ENSMUST00000033158 Rpgrip1Q9EPQ2 1331 aa26.86■■□□□ 1.89
Ubfd1-201ENSMUST00000033158 Ehmt2Q9Z148 1263 aaKnown RBP26.48■■□□□ 1.83
Ubfd1-201ENSMUST00000033158 Ccdc136Q3TVA9 1136 aa26.35■■□□□ 1.81
Ubfd1-201ENSMUST00000033158 Esf1Q3V1V3 845 aaKnown RBP26.09■■□□□ 1.77
Ubfd1-201ENSMUST00000033158 Cngb1E1AZ71 1325 aa26.03■■□□□ 1.76
Ubfd1-201ENSMUST00000033158 NischQ80TM9 1593 aa25.88■■□□□ 1.73
Ubfd1-201ENSMUST00000033158 Trim41Q5NCC3 630 aa25.83■■□□□ 1.73
Ubfd1-201ENSMUST00000033158 Gab3Q8BSM5 595 aa25.76■■□□□ 1.71
Ubfd1-201ENSMUST00000033158 Las1lA2BE28 776 aaKnown RBP25.72■■□□□ 1.71
Ubfd1-201ENSMUST00000033158 Wdr66E9Q743 1299 aa25.69■■□□□ 1.7
Ubfd1-201ENSMUST00000033158 Zeb1Q64318 1117 aa25.53■■□□□ 1.68
Ubfd1-201ENSMUST00000033158 Ube2uB1AUC4 352 aa25.51■■□□□ 1.67
Ubfd1-201ENSMUST00000033158 Npm2Q80W85 207 aa25.5■■□□□ 1.67
Ubfd1-201ENSMUST00000033158 Myt1lP97500 1187 aa25.32■■□□□ 1.64
Ubfd1-201ENSMUST00000033158 Pelp1Q9DBD5 1123 aaKnown RBP24.98■■□□□ 1.59
Ubfd1-201ENSMUST00000033158 Acin1Q9JIX8 1338 aaKnown RBP24.98■■□□□ 1.59
Ubfd1-201ENSMUST00000033158 NefmP08553 848 aa24.85■■□□□ 1.57
Ubfd1-201ENSMUST00000033158 UbtfP25976 765 aaKnown RBP24.82■■□□□ 1.56
Ubfd1-201ENSMUST00000033158 HrcG5E8J6 738 aa24.72■■□□□ 1.55
Ubfd1-201ENSMUST00000033158 Ccdc180J3QNE4 1664 aa24.53■■□□□ 1.52
Ubfd1-201ENSMUST00000033158 Il27Q8K3I6 234 aa24.48■■□□□ 1.51
Ubfd1-201ENSMUST00000033158 Stra8P70278 393 aa24.44■■□□□ 1.5
Ubfd1-201ENSMUST00000033158 CenpbP27790 599 aa24.43■■□□□ 1.5
Ubfd1-201ENSMUST00000033158 Slc24a1Q91WD8 1130 aa24.28■■□□□ 1.48
Ubfd1-201ENSMUST00000033158 Zcchc6Q5BLK4 1491 aaKnown RBP24.27■■□□□ 1.48
Ubfd1-201ENSMUST00000033158 Abcc9P70170 1546 aa24.15■■□□□ 1.46
Ubfd1-201ENSMUST00000033158 Cdk11bP24788 784 aaKnown RBP24.12■■□□□ 1.45
Ubfd1-201ENSMUST00000033158 Rtl1Q7M732 1744 aa24.11■■□□□ 1.45
Ubfd1-201ENSMUST00000033158 Fam50aQ9WV03 339 aaKnown RBP24.07■■□□□ 1.44
Ubfd1-201ENSMUST00000033158 Pcgf6Q99NA9 353 aa24.07■■□□□ 1.44
Ubfd1-201ENSMUST00000033158 Ap3b1Q9Z1T1 1105 aa24.04■■□□□ 1.44
Ubfd1-201ENSMUST00000033158 NclP09405 707 aaKnown RBP23.91■■□□□ 1.42
Ubfd1-201ENSMUST00000033158 Neurod1Q60867 357 aa23.87■■□□□ 1.41
Ubfd1-201ENSMUST00000033158 Nop58Q6DFW4 536 aaKnown RBP23.86■■□□□ 1.41
Ubfd1-201ENSMUST00000033158 Gm35339A0A140LHH9 1649 aa23.85■■□□□ 1.41
Ubfd1-201ENSMUST00000033158 Amer1Q7TS75 1132 aa23.85■■□□□ 1.41
Ubfd1-201ENSMUST00000033158 NrdcQ8BHG1 1161 aa23.85■■□□□ 1.41
Ubfd1-201ENSMUST00000033158 Anp32bQ9EST5 272 aaKnown RBP23.83■■□□□ 1.4
Ubfd1-201ENSMUST00000033158 Tnnt3Q9QZ47 272 aa23.74■■□□□ 1.39
Ubfd1-201ENSMUST00000033158 Ppargc1bQ8VHJ7 1014 aa23.74■■□□□ 1.39
Ubfd1-201ENSMUST00000033158 TonslQ6NZL6 1363 aa23.71■■□□□ 1.39
Ubfd1-201ENSMUST00000033158 Supt5hO55201 1082 aaKnown RBP23.67■■□□□ 1.38
Ubfd1-201ENSMUST00000033158 Mier1Q5UAK0 511 aa23.64■■□□□ 1.37
Ubfd1-201ENSMUST00000033158 Os9Q8K2C7 672 aa23.6■■□□□ 1.37
Ubfd1-201ENSMUST00000033158 Eif5bQ05D44 1216 aaKnown RBP23.54■■□□□ 1.36
Ubfd1-201ENSMUST00000033158 Abcc8B2RUS7 1588 aa23.54■■□□□ 1.36
Ubfd1-201ENSMUST00000033158 NeflP08551 543 aa23.54■■□□□ 1.36
Ubfd1-201ENSMUST00000033158 Npm1Q61937 292 aaKnown RBP23.52■■□□□ 1.35
Ubfd1-201ENSMUST00000033158 Lmod2Q3UHZ5 550 aa23.44■■□□□ 1.34
Ubfd1-201ENSMUST00000033158 Plekhg3Q4VAC9 1341 aa23.41■■□□□ 1.34
Ubfd1-201ENSMUST00000033158 Myt1Q8CFC2 1127 aa23.34■■□□□ 1.33
Ubfd1-201ENSMUST00000033158 Ttbk1Q6PCN3 1308 aa23.34■■□□□ 1.33
Ubfd1-201ENSMUST00000033158 4933416C03RikQ3V063 378 aa23.28■■□□□ 1.32
Ubfd1-201ENSMUST00000033158 Zbtb7cQ8VCZ7 619 aa23.24■■□□□ 1.31
Ubfd1-201ENSMUST00000033158 ClspnQ80YR7 1315 aa23.23■■□□□ 1.31
Ubfd1-201ENSMUST00000033158 Brd4Q9ESU6 1400 aaKnown RBP23.16■■□□□ 1.3
Ubfd1-201ENSMUST00000033158 Hnrnpul2Q00PI9 745 aaKnown RBP23.15■■□□□ 1.3
Ubfd1-201ENSMUST00000033158 Chic1Q8CBW7 227 aa23.07■■□□□ 1.28
Ubfd1-201ENSMUST00000033158 Eid3Q3V124 375 aa23.04■■□□□ 1.28
Ubfd1-201ENSMUST00000033158 Clip1Q922J3 1391 aa23.04■■□□□ 1.28
Ubfd1-201ENSMUST00000033158 Cep164Q5DU05 1446 aa23.02■■□□□ 1.28
Ubfd1-201ENSMUST00000033158 Rtl5Q5DTT4 599 aa22.97■■□□□ 1.27
Ubfd1-201ENSMUST00000033158 4930567H17RikQ3V0K5 233 aa22.94■■□□□ 1.26
Ubfd1-201ENSMUST00000033158 Ifnlr1Q8CGK5 535 aa22.93■■□□□ 1.26
Ubfd1-201ENSMUST00000033158 Zbtb4Q5F293 982 aa22.91■■□□□ 1.26
Ubfd1-201ENSMUST00000033158 Mapk8ip2Q9ERE9 830 aa22.91■■□□□ 1.26
Ubfd1-201ENSMUST00000033158 Dcaf1Q80TR8 1506 aa22.89■■□□□ 1.25
Ubfd1-201ENSMUST00000033158 Gm13697A2AK42 830 aa22.88■■□□□ 1.25
Ubfd1-201ENSMUST00000033158 Erich6D3Z6S9 713 aa22.86■■□□□ 1.25
Ubfd1-201ENSMUST00000033158 Sall2Q9QX96 1004 aa22.85■■□□□ 1.25
Ubfd1-201ENSMUST00000033158 Ccer2J3QPU5 274 aa22.83■■□□□ 1.25
Ubfd1-201ENSMUST00000033158 Anp32aO35381 247 aa22.82■■□□□ 1.24
Ubfd1-201ENSMUST00000033158 Fkbp15Q6P9Q6 1216 aaKnown RBP22.8■■□□□ 1.24
Ubfd1-201ENSMUST00000033158 Rb1cc1Q9ESK9 1588 aa22.76■■□□□ 1.23
Ubfd1-201ENSMUST00000033158 Nlrp6Q91WS2 869 aa22.75■■□□□ 1.23
Ubfd1-201ENSMUST00000033158 Hdac5Q9Z2V6 1113 aa22.75■■□□□ 1.23
Ubfd1-201ENSMUST00000033158 Ubl4bQ9CQ84 188 aa22.73■■□□□ 1.23
Ubfd1-201ENSMUST00000033158 Atp1b4Q99ME6 356 aa22.73■■□□□ 1.23
Ubfd1-201ENSMUST00000033158 Prdm10Q3UTQ7 1184 aa22.67■■□□□ 1.22
Ubfd1-201ENSMUST00000033158 Anks4bQ8K3X6 423 aa22.63■■□□□ 1.21
Ubfd1-201ENSMUST00000033158 Chic2Q9D9G3 165 aa22.57■■□□□ 1.2
Ubfd1-201ENSMUST00000033158 Polr3glQ8R0C0 218 aa22.57■■□□□ 1.2
Ubfd1-201ENSMUST00000033158 DaxxO35613 739 aa22.55■■□□□ 1.2
Ubfd1-201ENSMUST00000033158 BlmO88700 1416 aa22.55■■□□□ 1.2
Ubfd1-201ENSMUST00000033158 Gm13695A2AK44 830 aa22.52■■□□□ 1.2
Ubfd1-201ENSMUST00000033158 Gm38655A0A286YDK6 273 aa22.5■■□□□ 1.19
Ubfd1-201ENSMUST00000033158 Csrnp3P59055 597 aa22.47■■□□□ 1.19
Ubfd1-201ENSMUST00000033158 Setd5Q5XJV7 1441 aa22.43■■□□□ 1.18
Ubfd1-201ENSMUST00000033158 NacadQ5SWP3 1504 aa22.41■■□□□ 1.18
Ubfd1-201ENSMUST00000033158 Calr4Q3TQS0 420 aa22.4■■□□□ 1.18
Ubfd1-201ENSMUST00000033158 Clstn2Q9ER65 966 aa22.4■■□□□ 1.18
Ubfd1-201ENSMUST00000033158 Mrs2Q5NCE8 434 aa22.39■■□□□ 1.18
Ubfd1-201ENSMUST00000033158 Aplp2Q06335 707 aa22.36■■□□□ 1.17
Ubfd1-201ENSMUST00000033158 Upf2A2AT37 1269 aaKnown RBP22.36■■□□□ 1.17
Ubfd1-201ENSMUST00000033158 Golga3P55937 1487 aa22.31■■□□□ 1.16
Ubfd1-201ENSMUST00000033158 Ppp4r2Q0VGB7 417 aa22.3■■□□□ 1.16
Ubfd1-201ENSMUST00000033158 ArxO35085 564 aa22.29■■□□□ 1.16
Ubfd1-201ENSMUST00000033158 Rad21Q61550 635 aaKnown RBP22.28■■□□□ 1.16
Ubfd1-201ENSMUST00000033158 Baz1aO88379 1555 aa22.24■■□□□ 1.15
Retrieved 100 of 22,080 RNA–protein pairs in 11.1 ms