RNA–Protein interactions for RNA: ENSMUST00000027068.10

Tram1-201, Transcript of Translocating chain-associated membrane protein 1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Tram1, Length 2,938 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Tram1-201ENSMUST00000027068 NischQ80TM9 1593 aa35.45■■■■□ 3.27
Tram1-201ENSMUST00000027068 Abcc9P70170 1546 aa34.33■■■■□ 3.09
Tram1-201ENSMUST00000027068 Gm35339A0A140LHH9 1649 aa34.17■■■■□ 3.06
Tram1-201ENSMUST00000027068 Rhox8Q6VSS7 320 aa34.03■■■■□ 3.04
Tram1-201ENSMUST00000027068 Abcc8B2RUS7 1588 aa33.43■■■□□ 2.94
Tram1-201ENSMUST00000027068 Rtl1Q7M732 1744 aa33.21■■■□□ 2.91
Tram1-201ENSMUST00000027068 Ccdc180J3QNE4 1664 aa32.92■■■□□ 2.86
Tram1-201ENSMUST00000027068 Rpgrip1Q9EPQ2 1331 aa32.38■■■□□ 2.77
Tram1-201ENSMUST00000027068 Zcchc6Q5BLK4 1491 aaKnown RBP32.14■■■□□ 2.74
Tram1-201ENSMUST00000027068 Ehmt2Q9Z148 1263 aaKnown RBP32■■■□□ 2.71
Tram1-201ENSMUST00000027068 Acin1Q9JIX8 1338 aaKnown RBP31.89■■■□□ 2.7
Tram1-201ENSMUST00000027068 Ccdc136Q3TVA9 1136 aa31.54■■■□□ 2.64
Tram1-201ENSMUST00000027068 HrcG5E8J6 738 aa31.45■■■□□ 2.63
Tram1-201ENSMUST00000027068 Dcaf1Q80TR8 1506 aa31.23■■■□□ 2.59
Tram1-201ENSMUST00000027068 Rb1cc1Q9ESK9 1588 aa31.12■■■□□ 2.57
Tram1-201ENSMUST00000027068 Pcgf6Q99NA9 353 aa31.08■■■□□ 2.57
Tram1-201ENSMUST00000027068 Trim41Q5NCC3 630 aa30.97■■■□□ 2.55
Tram1-201ENSMUST00000027068 ScribQ80U72 1612 aa30.89■■■□□ 2.54
Tram1-201ENSMUST00000027068 Baz1aO88379 1555 aa30.67■■■□□ 2.5
Tram1-201ENSMUST00000027068 Supt5hO55201 1082 aaKnown RBP30.5■■■□□ 2.47
Tram1-201ENSMUST00000027068 Kdm5dQ62240 1548 aa30.5■■■□□ 2.47
Tram1-201ENSMUST00000027068 Cep164Q5DU05 1446 aa30.32■■■□□ 2.44
Tram1-201ENSMUST00000027068 Gab3Q8BSM5 595 aa30.15■■■□□ 2.42
Tram1-201ENSMUST00000027068 Cngb1E1AZ71 1325 aa30.06■■■□□ 2.4
Tram1-201ENSMUST00000027068 NacadQ5SWP3 1504 aa30.06■■■□□ 2.4
Tram1-201ENSMUST00000027068 Chic1Q8CBW7 227 aa30.05■■■□□ 2.4
Tram1-201ENSMUST00000027068 Smarca2Q6DIC0 1577 aa30.03■■■□□ 2.4
Tram1-201ENSMUST00000027068 Zeb1Q64318 1117 aa30.02■■■□□ 2.4
Tram1-201ENSMUST00000027068 Neurod1Q60867 357 aa29.92■■■□□ 2.38
Tram1-201ENSMUST00000027068 Rsf1E9PWW9 1441 aaKnown RBP29.89■■■□□ 2.38
Tram1-201ENSMUST00000027068 Crybg2B7ZCC2 1516 aa29.75■■■□□ 2.35
Tram1-201ENSMUST00000027068 Mier1Q5UAK0 511 aa29.75■■■□□ 2.35
Tram1-201ENSMUST00000027068 Ccdc88bQ4QRL3 1481 aa29.62■■■□□ 2.33
Tram1-201ENSMUST00000027068 NefmP08553 848 aa29.61■■■□□ 2.33
Tram1-201ENSMUST00000027068 Sall2Q9QX96 1004 aa29.55■■■□□ 2.32
Tram1-201ENSMUST00000027068 Brd4Q9ESU6 1400 aaKnown RBP29.43■■■□□ 2.3
Tram1-201ENSMUST00000027068 Cecr2E9Q2Z1 1453 aa29.42■■■□□ 2.3
Tram1-201ENSMUST00000027068 Sycp2Q9CUU3 1500 aa29.41■■■□□ 2.3
Tram1-201ENSMUST00000027068 Golga3P55937 1487 aa29.38■■■□□ 2.29
Tram1-201ENSMUST00000027068 Esf1Q3V1V3 845 aaKnown RBP29.27■■■□□ 2.28
Tram1-201ENSMUST00000027068 Las1lA2BE28 776 aaKnown RBP29.23■■■□□ 2.27
Tram1-201ENSMUST00000027068 UbtfP25976 765 aaKnown RBP29.22■■■□□ 2.27
Tram1-201ENSMUST00000027068 Synj1Q8CHC4 1574 aa29.21■■■□□ 2.27
Tram1-201ENSMUST00000027068 Wdr66E9Q743 1299 aa29.13■■■□□ 2.25
Tram1-201ENSMUST00000027068 1700123L14RikQ3V2K7 440 aa29.07■■■□□ 2.24
Tram1-201ENSMUST00000027068 Aebp2Q9Z248 504 aaKnown RBP29.07■■■□□ 2.24
Tram1-201ENSMUST00000027068 Ppargc1bQ8VHJ7 1014 aa29■■■□□ 2.23
Tram1-201ENSMUST00000027068 Csrnp3P59055 597 aa28.98■■■□□ 2.23
Tram1-201ENSMUST00000027068 Anks4bQ8K3X6 423 aa28.98■■■□□ 2.23
Tram1-201ENSMUST00000027068 CftrP26361 1476 aa28.91■■■□□ 2.22
Tram1-201ENSMUST00000027068 CenpbP27790 599 aa28.89■■■□□ 2.22
Tram1-201ENSMUST00000027068 Myt1lP97500 1187 aa28.86■■■□□ 2.21
Tram1-201ENSMUST00000027068 Top2bQ64511 1612 aa28.81■■■□□ 2.2
Tram1-201ENSMUST00000027068 DiexfQ8BTT6 772 aaKnown RBP28.78■■■□□ 2.2
Tram1-201ENSMUST00000027068 BicraF8VPZ9 1578 aa28.75■■■□□ 2.19
Tram1-201ENSMUST00000027068 Cdk11bP24788 784 aaKnown RBP28.72■■■□□ 2.19
Tram1-201ENSMUST00000027068 Cc2d2aQ8CFW7 1633 aa28.72■■■□□ 2.19
Tram1-201ENSMUST00000027068 Nop58Q6DFW4 536 aaKnown RBP28.71■■■□□ 2.19
Tram1-201ENSMUST00000027068 ClspnQ80YR7 1315 aa28.69■■■□□ 2.18
Tram1-201ENSMUST00000027068 Rapgef2Q8CHG7 1496 aa28.68■■■□□ 2.18
Tram1-201ENSMUST00000027068 Cttnbp2B9EJA2 1648 aa28.58■■■□□ 2.16
Tram1-201ENSMUST00000027068 Myt1Q8CFC2 1127 aa28.56■■■□□ 2.16
Tram1-201ENSMUST00000027068 TonslQ6NZL6 1363 aa28.54■■■□□ 2.16
Tram1-201ENSMUST00000027068 Cep162Q6ZQ06 1403 aa28.53■■■□□ 2.16
Tram1-201ENSMUST00000027068 Plekhg3Q4VAC9 1341 aa28.52■■■□□ 2.16
Tram1-201ENSMUST00000027068 Npm2Q80W85 207 aa28.52■■■□□ 2.16
Tram1-201ENSMUST00000027068 Gm38655A0A286YDK6 273 aa28.43■■■□□ 2.14
Tram1-201ENSMUST00000027068 Fmn1Q05860 1466 aa28.41■■■□□ 2.14
Tram1-201ENSMUST00000027068 Top2aQ01320 1528 aaKnown RBP28.4■■■□□ 2.14
Tram1-201ENSMUST00000027068 Clip1Q922J3 1391 aa28.35■■■□□ 2.13
Tram1-201ENSMUST00000027068 Bcl11aQ9QYE3 773 aa28.32■■■□□ 2.12
Tram1-201ENSMUST00000027068 Aplp2Q06335 707 aa28.31■■■□□ 2.12
Tram1-201ENSMUST00000027068 Smarca4Q3TKT4 1613 aaKnown RBP28.28■■■□□ 2.12
Tram1-201ENSMUST00000027068 Eid3Q3V124 375 aa28.15■■■□□ 2.1
Tram1-201ENSMUST00000027068 Ncapd3Q6ZQK0 1506 aa28.15■■■□□ 2.1
Tram1-201ENSMUST00000027068 Ap3b1Q9Z1T1 1105 aa28.11■■■□□ 2.09
Tram1-201ENSMUST00000027068 Eif4g1Q6NZJ6 1600 aaKnown RBP27.96■■■□□ 2.07
Tram1-201ENSMUST00000027068 Mapk8ip2Q9ERE9 830 aa27.91■■■□□ 2.06
Tram1-201ENSMUST00000027068 Iqgap2Q3UQ44 1575 aa27.89■■■□□ 2.05
Tram1-201ENSMUST00000027068 Hnrnpul2Q00PI9 745 aaKnown RBP27.87■■■□□ 2.05
Tram1-201ENSMUST00000027068 Il27Q8K3I6 234 aa27.86■■■□□ 2.05
Tram1-201ENSMUST00000027068 Arhgap35Q91YM2 1499 aa27.85■■■□□ 2.05
Tram1-201ENSMUST00000027068 PrkcshO08795 521 aa27.84■■■□□ 2.05
Tram1-201ENSMUST00000027068 Arap1Q4LDD4 1452 aa27.83■■■□□ 2.05
Tram1-201ENSMUST00000027068 SafbD3YXK2 937 aaKnown RBP27.83■■■□□ 2.05
Tram1-201ENSMUST00000027068 PtprkP35822 1457 aa27.81■■■□□ 2.04
Tram1-201ENSMUST00000027068 Eea1Q8BL66 1411 aa27.79■■■□□ 2.04
Tram1-201ENSMUST00000027068 Setd5Q5XJV7 1441 aa27.74■■■□□ 2.03
Tram1-201ENSMUST00000027068 Kdm5bQ80Y84 1544 aa27.7■■■□□ 2.03
Tram1-201ENSMUST00000027068 Arhgef5E9Q7D5 1581 aa27.63■■■□□ 2.01
Tram1-201ENSMUST00000027068 Fam71e1A1L3C1 212 aa27.61■■■□□ 2.01
Tram1-201ENSMUST00000027068 TnnQ80Z71 1560 aa27.61■■■□□ 2.01
Tram1-201ENSMUST00000027068 Fam50aQ9WV03 339 aaKnown RBP27.59■■■□□ 2.01
Tram1-201ENSMUST00000027068 Ccdc18Q640L5 1455 aa27.59■■■□□ 2.01
Tram1-201ENSMUST00000027068 Tnnt3Q9QZ47 272 aa27.58■■■□□ 2.01
Tram1-201ENSMUST00000027068 NrkQ9R0G8 1455 aa27.58■■■□□ 2.01
Tram1-201ENSMUST00000027068 Ifnlr1Q8CGK5 535 aa27.57■■■□□ 2
Tram1-201ENSMUST00000027068 NclP09405 707 aaKnown RBP27.55■■■□□ 2
Tram1-201ENSMUST00000027068 Baz1bQ9Z277 1479 aa27.54■■■□□ 2
Tram1-201ENSMUST00000027068 BlmO88700 1416 aa27.54■■■□□ 2
Retrieved 100 of 22,080 RNA–protein pairs in 8.5 ms