RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 RPRD1BQ9NQG5 326 aaKnown RBP13.83□□□□□ -0.2
LIG1-203ENST00000536218 COQ3Q9NZJ6 369 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 LRFN2Q9ULH4 789 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 PCDHB5Q9Y5E4 795 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 SNX5Q9Y5X3 404 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 MAU2Q9Y6X3 613 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 TSC2P49815 1807 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 TTC24A2A3L6 582 aaPredicted RBP13.83□□□□□ -0.2
LIG1-203ENST00000536218 INPP4BO15327 924 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 IGLV3-25P01717 112 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 GTF2E2P29084 291 aaKnown RBP13.83□□□□□ -0.2
LIG1-203ENST00000536218 ATAD3CQ5T2N8 411 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 CELF2-AS1Q8N7Q2 184 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 FBXO32Q969P5 355 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 FKBP10Q96AY3 582 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 TRIM8Q9BZR9 551 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 CLPBQ9H078 707 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 CATSPERBQ9H7T0 1116 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 CASS4Q9NQ75 786 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 AGPAT4Q9NRZ5 378 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 ARMC1Q9NVT9 282 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 GTSE1Q9NYZ3 720 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 PCDH10Q9P2E7 1040 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 ADAM28Q9UKQ2 775 aa13.83□□□□□ -0.2
LIG1-203ENST00000536218 PCP4L1A6NKN8 68 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 ENPP3O14638 875 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 OAZ2O95190 189 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 CCDC159P0C7I6 412 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 MAXP61244 160 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 HTRA3P83110 453 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 NPTX1Q15818 432 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 CYP51A1Q16850 503 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 GEN1Q17RS7 908 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 INSCQ1MX18 579 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 COLEC12Q5KU26 742 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 SPANXN3Q5MJ09 141 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 BRMS1LQ5PSV4 323 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 SLX4IPQ5VYV7 408 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 KCTD11Q693B1 232 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 MON1AQ86VX9 555 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 CIR1Q86X95 450 aaPredicted RBP13.82□□□□□ -0.2
LIG1-203ENST00000536218 LYSMD2Q8IV50 215 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 OR6Q1Q8NGQ2 317 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 OR9I1Q8NGQ6 314 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 KLHL5Q96PQ7 755 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 FICDQ9BVA6 458 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 TRIM62Q9BVG3 475 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 TASP1Q9H6P5 420 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 UCKL1Q9NWZ5 548 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 TET1Q8NFU7 2136 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 A0A1W2PQ72 361 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 ARVCFO00192 962 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 PQBP1O60828 265 aaKnown RBP13.82□□□□□ -0.2
LIG1-203ENST00000536218 CNTN5O94779 1100 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 JUNBP17275 347 aaPredicted RBP13.82□□□□□ -0.2
LIG1-203ENST00000536218 GP5P40197 560 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 CCL23P55773 120 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 TBX4P57082 545 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 CBLBQ13191 982 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 DGCR6Q14129 220 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 HIST2H2ACQ16777 129 aaPredicted RBP13.82□□□□□ -0.2
LIG1-203ENST00000536218 C10orf120Q5SQS8 335 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 PIK3R6Q5UE93 754 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 STEAP3Q658P3 488 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 SDE2Q6IQ49 451 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 CCBE1Q6UXH8 406 aaPredicted RBP13.82□□□□□ -0.2
LIG1-203ENST00000536218 TMEM173Q86WV6 379 aaPredicted RBP13.82□□□□□ -0.2
LIG1-203ENST00000536218 SYTL1Q8IYJ3 562 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 ACVR1CQ8NER5 493 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 PABPC5Q96DU9 382 aaKnown RBP13.82□□□□□ -0.2
LIG1-203ENST00000536218 VMP1Q96GC9 406 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 CRISPLD1Q9H336 500 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 SP140LQ9H930 580 aa13.82□□□□□ -0.2
LIG1-203ENST00000536218 ZCWPW2A0A1B0GU75 182 aa13.81□□□□□ -0.2
LIG1-203ENST00000536218 SNTNA6NMZ2 147 aa13.81□□□□□ -0.2
LIG1-203ENST00000536218 ERVH48-1M5A8F1 160 aa13.81□□□□□ -0.2
LIG1-203ENST00000536218 SLC22A2O15244 555 aa13.81□□□□□ -0.2
LIG1-203ENST00000536218 MAFKO60675 156 aa13.81□□□□□ -0.2
LIG1-203ENST00000536218 CHRNA4P43681 627 aa13.81□□□□□ -0.2
LIG1-203ENST00000536218 TAF10Q12962 218 aa13.81□□□□□ -0.2
LIG1-203ENST00000536218 DUSP4Q13115 394 aa13.81□□□□□ -0.2
LIG1-203ENST00000536218 PRKAA1Q13131 559 aa13.81□□□□□ -0.2
LIG1-203ENST00000536218 CTF1Q16619 201 aa13.81□□□□□ -0.2
LIG1-203ENST00000536218 RSPO2Q6UXX9 243 aaPredicted RBP13.81□□□□□ -0.2
LIG1-203ENST00000536218 KCNMB4Q86W47 210 aa13.81□□□□□ -0.2
LIG1-203ENST00000536218 SPNS2Q8IVW8 549 aa13.81□□□□□ -0.2
LIG1-203ENST00000536218 LEMD2Q8NC56 503 aa13.81□□□□□ -0.2
LIG1-203ENST00000536218 JPH3Q8WXH2 748 aaPredicted RBP13.81□□□□□ -0.2
LIG1-203ENST00000536218 TRIM63Q969Q1 353 aa13.81□□□□□ -0.2
LIG1-203ENST00000536218 SEPHS2Q99611 448 aa13.81□□□□□ -0.2
LIG1-203ENST00000536218 REXO4Q9GZR2 422 aaKnown RBP13.81□□□□□ -0.2
LIG1-203ENST00000536218 ZNF385DQ9H6B1 395 aa13.81□□□□□ -0.2
LIG1-203ENST00000536218 NEU3Q9UQ49 428 aa13.81□□□□□ -0.2
LIG1-203ENST00000536218 EIF3LQ9Y262 564 aaKnown RBP13.81□□□□□ -0.2
LIG1-203ENST00000536218 C12orf71A8MTZ7 269 aa13.81□□□□□ -0.2
LIG1-203ENST00000536218 EVPLLA8MZ36 301 aa13.81□□□□□ -0.2
LIG1-203ENST00000536218 ACOX3O15254 700 aa13.81□□□□□ -0.2
LIG1-203ENST00000536218 SELPP16109 830 aa13.81□□□□□ -0.2
LIG1-203ENST00000536218 ALOX12P18054 663 aa13.81□□□□□ -0.2
LIG1-203ENST00000536218 PPP5CP53041 499 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms