RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 CHID1Q9BWS9 393 aa18.52■□□□□ 0.56
CPSF3-201ENST00000238112 SARS2Q9NP81 518 aaKnown RBP18.52■□□□□ 0.56
CPSF3-201ENST00000238112 TMEM45AQ9NWC5 275 aa18.52■□□□□ 0.56
CPSF3-201ENST00000238112 PKD2L2Q9NZM6 624 aa18.52■□□□□ 0.56
CPSF3-201ENST00000238112 USP22Q9UPT9 525 aa18.52■□□□□ 0.56
CPSF3-201ENST00000238112 MTMR11A4FU01 709 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 HRH2P25021 359 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 VARSP26640 1264 aaKnown RBP18.51■□□□□ 0.55
CPSF3-201ENST00000238112 CDH4P55283 916 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 TRIM71Q2Q1W2 868 aaKnown RBP18.51■□□□□ 0.55
CPSF3-201ENST00000238112 CTSL3PQ5NE16 218 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 DHRS4L2Q6PKH6 230 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 RASAL3Q86YV0 1011 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 CPNE9Q8IYJ1 553 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 LRRC43Q8N309 656 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 EFHBQ8N7U6 833 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 RNF217Q8TC41 542 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 SPATA17Q96L03 361 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 CDK15Q96Q40 435 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 CXorf21Q9HAI6 301 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 MAGEL2Q9UJ55 1249 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 ASB1Q9Y576 335 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 KDELR3O43731 214 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 PRLP01236 227 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 TTKP33981 857 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 C5orf22Q49AR2 442 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 OR52B6Q8NGF0 335 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 KCNJ9Q92806 393 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 NACA2Q9H009 215 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 CRISPLD1Q9H336 500 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 HIPK3Q9H422 1215 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 AGO1Q9UL18 857 aaKnown RBP18.51■□□□□ 0.55
CPSF3-201ENST00000238112 CDC14AQ9UNH5 594 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 PCDHGC4Q9Y5F7 938 aa18.51■□□□□ 0.55
CPSF3-201ENST00000238112 CROCCQ5TZA2 2017 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 STX7O15400 261 aaKnown RBP18.5■□□□□ 0.55
CPSF3-201ENST00000238112 SNAP29O95721 258 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 CR2P20023 1033 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 CD9P21926 228 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 SLC11A2P49281 568 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 OR4D2P58180 307 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 ERVPABLB-1P60509 514 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 NKX3-2P78367 333 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 TGFBIQ15582 683 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 AARS2Q5JTZ9 985 aaKnown RBP18.5■□□□□ 0.55
CPSF3-201ENST00000238112 GLYATQ6IB77 296 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 FRA10AC1Q70Z53 315 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 IFNL1Q8IU54 200 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 METTL6Q8TCB7 284 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 GIPC2Q8TF65 315 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 DCUN1D5Q9BTE7 237 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 ADGRE3Q9BY15 652 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 OSBPL6Q9BZF3 934 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 BPIFA1Q9NP55 256 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 RAI2Q9Y5P3 530 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 GMEB1Q9Y692 573 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 GRXCR2A6NFK2 248 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 PSMA3P25788 255 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 RPS24P62847 133 aaKnown RBP18.5■□□□□ 0.55
CPSF3-201ENST00000238112 TMED1Q13445 227 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 MRPL58Q14197 206 aaKnown RBP18.5■□□□□ 0.55
CPSF3-201ENST00000238112 IL27RAQ6UWB1 636 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 Q6ZSR9 355 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 TAS2R42Q7RTR8 314 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 RALGPS2Q86X27 583 aaPredicted RBP18.5■□□□□ 0.55
CPSF3-201ENST00000238112 DPP10Q8N608 796 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 LEMD2Q8NC56 503 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 SOX17Q9H6I2 414 aaPredicted RBP18.5■□□□□ 0.55
CPSF3-201ENST00000238112 POLR1BQ9H9Y6 1135 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 COMMD8Q9NX08 183 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 ZNF639Q9UID6 485 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 DNMT3LQ9UJW3 386 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 PCDHB3Q9Y5E6 796 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 COMMD10Q9Y6G5 202 aa18.5■□□□□ 0.55
CPSF3-201ENST00000238112 ALBP02768 609 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 ZDHHC11BP0C7U3 371 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 CDH1P12830 882 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 STT3AP46977 705 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 CLCN4P51793 760 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 TRIM32Q13049 653 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 PMS2P3Q13401 168 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 FXNQ16595 210 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 CST9Q5W186 159 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 LETMD1Q6P1Q0 360 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 RNF19BQ6ZMZ0 732 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 PRR23BQ6ZRT6 265 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 CROCCP3Q8IVE0 287 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 ZNF420Q8TAQ5 688 aaPredicted RBP18.49■□□□□ 0.55
CPSF3-201ENST00000238112 PPM1MQ96MI6 270 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 YTHDF1Q9BYJ9 559 aaKnown RBP18.49■□□□□ 0.55
CPSF3-201ENST00000238112 GPR62Q9BZJ7 368 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 RETREG1Q9H6L5 497 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 HEBP1Q9NRV9 189 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 NUDT4Q9NZJ9 180 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 CBX4O00257 560 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 CAPN1P07384 714 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 RHOCP08134 193 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 ATP5C1P36542 298 aaKnown RBP18.49■□□□□ 0.55
CPSF3-201ENST00000238112 CTBSQ01459 385 aa18.49■□□□□ 0.55
CPSF3-201ENST00000238112 DUSP4Q13115 394 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms