RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	THI13	Q07748	340 aa		5.83	□□□□□ -1.48
CUP9	YPL177C	PPX1	P38698	397 aa		5.82	□□□□□ -1.48
CUP9	YPL177C	YAR028W	P39548	234 aa		5.82	□□□□□ -1.48
CUP9	YPL177C	RIM8	P53179	542 aa		5.82	□□□□□ -1.48
CUP9	YPL177C	NOG1	Q02892	647 aa	Known RBP	5.82	□□□□□ -1.48
CUP9	YPL177C	HDA2	Q06629	674 aa		5.82	□□□□□ -1.48
CUP9	YPL177C	NOC3	Q07896	663 aa	Predicted RBP	5.82	□□□□□ -1.48
CUP9	YPL177C	ETP1	P38748	585 aa	Known RBP	5.81	□□□□□ -1.48
CUP9	YPL177C	SHU2	P38957	223 aa		5.81	□□□□□ -1.48
CUP9	YPL177C	YLR257W	Q06146	321 aa	Known RBP	5.81	□□□□□ -1.48
CUP9	YPL177C	HEM3	P28789	327 aa		5.8	□□□□□ -1.48
CUP9	YPL177C	NMD3	P38861	518 aa	Known RBP	5.8	□□□□□ -1.48
CUP9	YPL177C	YCS4	Q06156	1176 aa		5.8	□□□□□ -1.48
CUP9	YPL177C	RET1	P22276	1149 aa	Known RBP	5.79	□□□□□ -1.48
CUP9	YPL177C	MET4	P32389	672 aa		5.79	□□□□□ -1.48
CUP9	YPL177C	YHL012W	P38709	493 aa		5.79	□□□□□ -1.48
CUP9	YPL177C	UTP5	Q04177	643 aa	Known RBP	5.79	□□□□□ -1.48
CUP9	YPL177C	MTR4	P47047	1073 aa	Known RBP	5.78	□□□□□ -1.48
CUP9	YPL177C	SAM37	P50110	327 aa		5.78	□□□□□ -1.48
CUP9	YPL177C	RSA3	Q05942	220 aa	Known RBP	5.78	□□□□□ -1.48
CUP9	YPL177C	SOD2	P00447	233 aa		5.77	□□□□□ -1.49
CUP9	YPL177C	MSH3	P25336	1018 aa		5.76	□□□□□ -1.49
CUP9	YPL177C	MDL2	P33311	773 aa		5.76	□□□□□ -1.49
CUP9	YPL177C	CIC1	P38779	376 aa	Known RBP	5.76	□□□□□ -1.49
CUP9	YPL177C	XKS1	P42826	600 aa		5.76	□□□□□ -1.49
CUP9	YPL177C	HRK1	Q08732	759 aa	Known RBP	5.76	□□□□□ -1.49
CUP9	YPL177C	YPL277C	Q08989	487 aa		5.76	□□□□□ -1.49
CUP9	YPL177C	ATE1	P16639	503 aa		5.75	□□□□□ -1.49
CUP9	YPL177C	POL32	P47110	350 aa		5.75	□□□□□ -1.49
CUP9	YPL177C	PHO4	P07270	312 aa	Known RBP	5.74	□□□□□ -1.49
CUP9	YPL177C	UGA4	P32837	571 aa		5.74	□□□□□ -1.49
CUP9	YPL177C	TOD6	P34219	525 aa		5.74	□□□□□ -1.49
CUP9	YPL177C	YJL045W	P47052	634 aa		5.74	□□□□□ -1.49
CUP9	YPL177C	SRO9	P25567	434 aa	Known RBP	5.73	□□□□□ -1.49
CUP9	YPL177C	PRP40	P33203	583 aa	Known RBP	5.73	□□□□□ -1.49
CUP9	YPL177C	HSE1	P38753	452 aa		5.73	□□□□□ -1.49
CUP9	YPL177C	SNO2	P53823	222 aa		5.73	□□□□□ -1.49
CUP9	YPL177C	RPS13	P05756	151 aa	Known RBP	5.72	□□□□□ -1.49
CUP9	YPL177C	PEX13	P80667	386 aa		5.72	□□□□□ -1.49
CUP9	YPL177C	RRP15	Q06511	250 aa	Predicted RBP	5.72	□□□□□ -1.49
CUP9	YPL177C	LAP2	Q10740	671 aa		5.72	□□□□□ -1.49
CUP9	YPL177C	VMA4	P22203	233 aa	Known RBP	5.71	□□□□□ -1.5
CUP9	YPL177C	AIM26	P32858	118 aa		5.71	□□□□□ -1.5
CUP9	YPL177C	DAK2	P43550	591 aa		5.71	□□□□□ -1.5
CUP9	YPL177C	FOL2	P51601	243 aa	Known RBP	5.71	□□□□□ -1.5
CUP9	YPL177C	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	5.7	□□□□□ -1.5	RIP-Chip
CUP9	YPL177C	RPT1	P33299	467 aa	Known RBP	5.7	□□□□□ -1.5
CUP9	YPL177C	RDH54	P38086	958 aa		5.7	□□□□□ -1.5
CUP9	YPL177C	QNS1	P38795	714 aa	Known RBP	5.7	□□□□□ -1.5
CUP9	YPL177C	ULP1	Q02724	621 aa		5.7	□□□□□ -1.5
CUP9	YPL177C	CLU1	Q03690	1277 aa	Known RBP	5.7	□□□□□ -1.5
CUP9	YPL177C	PEX28	P38848	579 aa		5.69	□□□□□ -1.5
CUP9	YPL177C	RSM26	P47141	266 aa		5.69	□□□□□ -1.5
CUP9	YPL177C	YNR063W	P53749	607 aa		5.69	□□□□□ -1.5
CUP9	YPL177C	YDR132C	Q03900	495 aa		5.69	□□□□□ -1.5
CUP9	YPL177C	RKM2	Q03942	479 aa		5.69	□□□□□ -1.5
CUP9	YPL177C	RSC58	Q07979	502 aa		5.69	□□□□□ -1.5
CUP9	YPL177C	HEM13	P11353	328 aa	Known RBP	5.68	□□□□□ -1.5
CUP9	YPL177C	GCD6	P32501	712 aa	Known RBP	5.68	□□□□□ -1.5
CUP9	YPL177C	VPS35	P34110	944 aa		5.68	□□□□□ -1.5
CUP9	YPL177C	DAL4	Q04895	635 aa		5.68	□□□□□ -1.5
CUP9	YPL177C	TOS4	Q06266	489 aa		5.68	□□□□□ -1.5
CUP9	YPL177C	PRE10	P21242	288 aa	Known RBP RIP-Chip data	5.67	□□□□□ -1.5	not detected
CUP9	YPL177C	CTS1	P29029	562 aa		5.67	□□□□□ -1.5
CUP9	YPL177C	MCM2	P29469	868 aa		5.67	□□□□□ -1.5
CUP9	YPL177C	ASF1	P32447	279 aa		5.67	□□□□□ -1.5
CUP9	YPL177C	YSC84	P32793	468 aa		5.67	□□□□□ -1.5
CUP9	YPL177C	MGE1	P38523	228 aa		5.67	□□□□□ -1.5
CUP9	YPL177C	RCL1	Q08096	367 aa	Predicted RBP	5.67	□□□□□ -1.5
CUP9	YPL177C	KAR2	P16474	682 aa	Known RBP	5.66	□□□□□ -1.5
CUP9	YPL177C	SEC8	P32855	1065 aa		5.66	□□□□□ -1.5
CUP9	YPL177C	SQT1	P35184	431 aa		5.66	□□□□□ -1.5
CUP9	YPL177C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	5.66	□□□□□ -1.5	not detected
CUP9	YPL177C	AFG2	P32794	780 aa		5.65	□□□□□ -1.5
CUP9	YPL177C	ADD66	P36040	267 aa		5.65	□□□□□ -1.5
CUP9	YPL177C	ATG14	P38270	344 aa		5.65	□□□□□ -1.5
CUP9	YPL177C	VPS53	P47061	822 aa		5.65	□□□□□ -1.5
CUP9	YPL177C	YJR107W	P47145	328 aa		5.65	□□□□□ -1.5
CUP9	YPL177C	YGL140C	P53120	1219 aa		5.65	□□□□□ -1.5
CUP9	YPL177C	OYE2	Q03558	400 aa	Known RBP	5.65	□□□□□ -1.5
CUP9	YPL177C	GSF2	Q04697	403 aa	Known RBP	5.65	□□□□□ -1.5
CUP9	YPL177C	YLR358C	O13565	187 aa		5.64	□□□□□ -1.51
CUP9	YPL177C	SPS1	P08458	490 aa		5.64	□□□□□ -1.51
CUP9	YPL177C	FYV10	P40492	516 aa		5.64	□□□□□ -1.51
CUP9	YPL177C	ENV11	P53246	860 aa		5.64	□□□□□ -1.51
CUP9	YPL177C	YPL109C	Q02981	657 aa		5.64	□□□□□ -1.51
CUP9	YPL177C	OXR1	Q08952	273 aa		5.64	□□□□□ -1.51
CUP9	YPL177C	ABZ1	P37254	787 aa	Predicted RBP	5.63	□□□□□ -1.51
CUP9	YPL177C	SHM2	P37291	469 aa	Known RBP	5.63	□□□□□ -1.51
CUP9	YPL177C	NBA1	Q08229	501 aa	Known RBP	5.63	□□□□□ -1.51
CUP9	YPL177C	SEC23	P15303	768 aa	Known RBP	5.62	□□□□□ -1.51
CUP9	YPL177C	KIP1	P28742	1111 aa		5.62	□□□□□ -1.51
CUP9	YPL177C	BAP2	P38084	609 aa		5.62	□□□□□ -1.51
CUP9	YPL177C	FAA3	P39002	694 aa		5.62	□□□□□ -1.51
CUP9	YPL177C	RPS26A	P39938	119 aa	Known RBP	5.62	□□□□□ -1.51
CUP9	YPL177C	RPS26B	P39939	119 aa	Known RBP	5.62	□□□□□ -1.51
CUP9	YPL177C	ADI1	Q03677	179 aa		5.62	□□□□□ -1.51
CUP9	YPL177C	GIS1	Q03833	894 aa		5.62	□□□□□ -1.51
CUP9	YPL177C	SPR28	Q04921	423 aa		5.62	□□□□□ -1.51
CUP9	YPL177C	COQ4	O13525	335 aa		5.61	□□□□□ -1.51

Retrieved 100 of 5,963 RNA–protein pairs in 16.1 ms