RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	PEP7	P32609	515 aa		7.44	□□□□□ -1.22
RRP40	YOL142W	SPO74	P45819	413 aa		7.44	□□□□□ -1.22
RRP40	YOL142W	ELA1	P53861	379 aa	Predicted RBP	7.44	□□□□□ -1.22
RRP40	YOL142W	ESF1	Q06344	628 aa	Known RBP	7.44	□□□□□ -1.22
RRP40	YOL142W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	7.43	□□□□□ -1.22	not detected
RRP40	YOL142W	XKS1	P42826	600 aa		7.43	□□□□□ -1.22
RRP40	YOL142W	MYO2	P19524	1574 aa	Known RBP	7.42	□□□□□ -1.22
RRP40	YOL142W	KAE1	P36132	386 aa		7.42	□□□□□ -1.22
RRP40	YOL142W	MSH4	P40965	878 aa	Predicted RBP	7.42	□□□□□ -1.22
RRP40	YOL142W	RMD1	Q03441	430 aa		7.42	□□□□□ -1.22
RRP40	YOL142W	CHS2	P14180	963 aa		7.41	□□□□□ -1.22
RRP40	YOL142W	YAR028W	P39548	234 aa		7.41	□□□□□ -1.22
RRP40	YOL142W	SBP1	P10080	294 aa	Known RBP	7.4	□□□□□ -1.22
RRP40	YOL142W	TAF2	P23255	1407 aa		7.4	□□□□□ -1.22
RRP40	YOL142W	TAF13	P11747	167 aa		7.39	□□□□□ -1.23
RRP40	YOL142W	ADD66	P36040	267 aa		7.39	□□□□□ -1.23
RRP40	YOL142W	HDA2	Q06629	674 aa		7.39	□□□□□ -1.23
RRP40	YOL142W	RPS4A	P0CX35	261 aa	Known RBP	7.38	□□□□□ -1.23
RRP40	YOL142W	RPS4B	P0CX36	261 aa	Known RBP	7.38	□□□□□ -1.23
RRP40	YOL142W	SMY2	P32909	740 aa	Known RBP	7.38	□□□□□ -1.23
RRP40	YOL142W	ATG14	P38270	344 aa		7.38	□□□□□ -1.23
RRP40	YOL142W	ALT1	P52893	592 aa		7.38	□□□□□ -1.23
RRP40	YOL142W	EST2	Q06163	884 aa		7.38	□□□□□ -1.23
RRP40	YOL142W	GCR1	P07261	785 aa		7.37	□□□□□ -1.23
RRP40	YOL142W	MSB1	P21339	1137 aa	Known RBP	7.37	□□□□□ -1.23
RRP40	YOL142W	NFS1	P25374	497 aa		7.37	□□□□□ -1.23
RRP40	YOL142W	WHI3	P34761	661 aa	Known RBP	7.37	□□□□□ -1.23
RRP40	YOL142W	NNK1	P36003	928 aa		7.37	□□□□□ -1.23
RRP40	YOL142W	MMM1	P41800	426 aa		7.37	□□□□□ -1.23
RRP40	YOL142W	YGR130C	P53278	816 aa		7.37	□□□□□ -1.23
RRP40	YOL142W	YNR063W	P53749	607 aa		7.37	□□□□□ -1.23
RRP40	YOL142W	RKM2	Q03942	479 aa		7.37	□□□□□ -1.23
RRP40	YOL142W	MRL1	Q06815	381 aa		7.37	□□□□□ -1.23
RRP40	YOL142W	TRP3	P00937	484 aa		7.36	□□□□□ -1.23
RRP40	YOL142W	GNP1	P48813	663 aa		7.36	□□□□□ -1.23
RRP40	YOL142W	SNU71	P53207	620 aa	Known RBP	7.36	□□□□□ -1.23
RRP40	YOL142W	LAP2	Q10740	671 aa		7.36	□□□□□ -1.23
RRP40	YOL142W	GLT1	Q12680	2145 aa	Known RBP	7.36	□□□□□ -1.23
RRP40	YOL142W	TY2B-LR1	P0C2J3	1770 aa		7.36	□□□□□ -1.23
RRP40	YOL142W	TY2B-F	P0CX63	1770 aa		7.36	□□□□□ -1.23
RRP40	YOL142W	TY2B-GR2	P0CX64	1770 aa		7.36	□□□□□ -1.23
RRP40	YOL142W	TY2B-C	P25384	1770 aa		7.36	□□□□□ -1.23
RRP40	YOL142W	TY2B-DR2	Q03494	1770 aa		7.36	□□□□□ -1.23
RRP40	YOL142W	TY1B-DR1	Q03855	1755 aa		7.36	□□□□□ -1.23
RRP40	YOL142W	TY2B-DR3	Q07791	1770 aa	Known RBP	7.36	□□□□□ -1.23
RRP40	YOL142W	TY2B-OR1	Q12113	1770 aa		7.36	□□□□□ -1.23
RRP40	YOL142W	TY2B-DR1	Q12472	1770 aa		7.36	□□□□□ -1.23
RRP40	YOL142W	TY2B-OR2	Q12501	1770 aa		7.36	□□□□□ -1.23
RRP40	YOL142W	DED1	P06634	604 aa	Known RBP	7.35	□□□□□ -1.23
RRP40	YOL142W	HSE1	P38753	452 aa		7.35	□□□□□ -1.23
RRP40	YOL142W	CIT3	P43635	486 aa		7.35	□□□□□ -1.23
RRP40	YOL142W	SIW14	P53965	281 aa		7.35	□□□□□ -1.23
RRP40	YOL142W	EAR1	Q03212	550 aa		7.35	□□□□□ -1.23
RRP40	YOL142W	YPK9	Q12697	1472 aa		7.35	□□□□□ -1.23
RRP40	YOL142W	SKI3	P17883	1432 aa	Known RBP	7.35	□□□□□ -1.23
RRP40	YOL142W	BPT1	P14772	1559 aa		7.34	□□□□□ -1.23
RRP40	YOL142W	RET1	P22276	1149 aa	Known RBP	7.34	□□□□□ -1.23
RRP40	YOL142W	PET112	P33893	541 aa		7.34	□□□□□ -1.23
RRP40	YOL142W	YKR073C	P36153	106 aa		7.34	□□□□□ -1.23
RRP40	YOL142W	ALO1	P54783	526 aa	Known RBP	7.34	□□□□□ -1.23
RRP40	YOL142W	ROD1	Q02805	837 aa		7.34	□□□□□ -1.23
RRP40	YOL142W	RSA3	Q05942	220 aa	Known RBP	7.34	□□□□□ -1.23
RRP40	YOL142W	YLR257W	Q06146	321 aa	Known RBP	7.34	□□□□□ -1.23
RRP40	YOL142W	MED7	Q08278	222 aa		7.34	□□□□□ -1.23
RRP40	YOL142W	AFG2	P32794	780 aa		7.33	□□□□□ -1.24
RRP40	YOL142W	HXT13	P39924	564 aa		7.33	□□□□□ -1.24
RRP40	YOL142W	HXT17	P53631	564 aa		7.33	□□□□□ -1.24
RRP40	YOL142W	HXT15	P54854	567 aa		7.33	□□□□□ -1.24
RRP40	YOL142W	ENT3	P47160	408 aa		7.32	□□□□□ -1.24
RRP40	YOL142W	YOR059C	Q08448	450 aa	Known RBP	7.32	□□□□□ -1.24
RRP40	YOL142W	SCC2	Q04002	1493 aa		7.31	□□□□□ -1.24
RRP40	YOL142W	CYC7	P00045	113 aa		7.31	□□□□□ -1.24
RRP40	YOL142W	QNS1	P38795	714 aa	Known RBP	7.31	□□□□□ -1.24
RRP40	YOL142W	VPS53	P47061	822 aa		7.31	□□□□□ -1.24
RRP40	YOL142W	RCM1	P53972	490 aa		7.31	□□□□□ -1.24
RRP40	YOL142W	SVF1	Q05515	481 aa		7.31	□□□□□ -1.24
RRP40	YOL142W	PUS7	Q08647	676 aa	Known RBP	7.31	□□□□□ -1.24
RRP40	YOL142W	RTT10	Q08924	1013 aa		7.31	□□□□□ -1.24
RRP40	YOL142W	MKK2	P32491	506 aa		7.3	□□□□□ -1.24
RRP40	YOL142W	MNR2	P35724	969 aa		7.3	□□□□□ -1.24
RRP40	YOL142W	TOS1	P38288	455 aa		7.3	□□□□□ -1.24
RRP40	YOL142W	NMD3	P38861	518 aa	Known RBP	7.3	□□□□□ -1.24
RRP40	YOL142W	RAT1	Q02792	1006 aa	Known RBP	7.3	□□□□□ -1.24
RRP40	YOL142W	TPP1	Q03796	238 aa		7.3	□□□□□ -1.24
RRP40	YOL142W	YVC1	Q12324	675 aa		7.3	□□□□□ -1.24
RRP40	YOL142W	DUT1	P33317	147 aa		7.29	□□□□□ -1.24
RRP40	YOL142W	PTC5	Q12511	572 aa		7.29	□□□□□ -1.24
RRP40	YOL142W	TY1B-BR	Q12193	1756 aa		7.28	□□□□□ -1.24
RRP40	YOL142W	TY1B-GR3	Q12316	1755 aa		7.28	□□□□□ -1.24
RRP40	YOL142W	TY1B-OR	Q92393	1755 aa		7.28	□□□□□ -1.24
RRP40	YOL142W	GCD1	P09032	578 aa	Predicted RBP	7.28	□□□□□ -1.24
RRP40	YOL142W	CDC34	P14682	295 aa		7.28	□□□□□ -1.24
RRP40	YOL142W	RAD27	P26793	382 aa		7.28	□□□□□ -1.24
RRP40	YOL142W	OMA1	P36163	345 aa		7.28	□□□□□ -1.24
RRP40	YOL142W	ALG3	P38179	458 aa		7.28	□□□□□ -1.24
RRP40	YOL142W	OYE3	P41816	400 aa	Predicted RBP	7.28	□□□□□ -1.24
RRP40	YOL142W	HRK1	Q08732	759 aa	Known RBP	7.28	□□□□□ -1.24
RRP40	YOL142W	TY2B-B	Q12491	1770 aa		7.28	□□□□□ -1.24
RRP40	YOL142W	TY1B-DR3	Q99231	1755 aa		7.28	□□□□□ -1.24
RRP40	YOL142W	PAM1	P37304	830 aa	Known RBP	7.27	□□□□□ -1.25

Retrieved 100 of 5,963 RNA–protein pairs in 28.6 ms