RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPT3	YDR394W	PEP12	P32854	288 aa		7.01	□□□□□ -1.29
RPT3	YDR394W	TTI1	P36097	1038 aa		7.01	□□□□□ -1.29
RPT3	YDR394W	UTP7	P40055	554 aa	Known RBP	7.01	□□□□□ -1.29
RPT3	YDR394W	RSM25	P40496	264 aa		7.01	□□□□□ -1.29
RPT3	YDR394W	CIR1	P42940	261 aa		7.01	□□□□□ -1.29
RPT3	YDR394W	NAM8	Q00539	523 aa	Known RBP	7.01	□□□□□ -1.29
RPT3	YDR394W	ADR1	P07248	1323 aa		7.01	□□□□□ -1.29
RPT3	YDR394W	PIF1	P07271	859 aa		7	□□□□□ -1.29
RPT3	YDR394W	SLA1	P32790	1244 aa		7	□□□□□ -1.29
RPT3	YDR394W	PBY1	P38254	753 aa		7	□□□□□ -1.29
RPT3	YDR394W	MSN5	P52918	1224 aa		7	□□□□□ -1.29
RPT3	YDR394W	UBP16	Q02863	499 aa		7	□□□□□ -1.29
RPT3	YDR394W	PSK2	Q08217	1101 aa		7	□□□□□ -1.29
RPT3	YDR394W	TY1A-DR3	Q12441	440 aa		7	□□□□□ -1.29
RPT3	YDR394W	ELM1	P32801	640 aa		6.99	□□□□□ -1.29
RPT3	YDR394W	RPN11	P43588	306 aa	Known RBP	6.99	□□□□□ -1.29
RPT3	YDR394W	PEX14	P53112	341 aa		6.99	□□□□□ -1.29
RPT3	YDR394W	PIB2	P53191	635 aa		6.99	□□□□□ -1.29
RPT3	YDR394W	KRE33	P53914	1056 aa	Known RBP	6.99	□□□□□ -1.29
RPT3	YDR394W	RPN7	Q06103	429 aa	Known RBP	6.99	□□□□□ -1.29
RPT3	YDR394W	ETT1	Q08421	412 aa	Known RBP	6.99	□□□□□ -1.29
RPT3	YDR394W	POM152	P39685	1337 aa		6.99	□□□□□ -1.29
RPT3	YDR394W	RPN12	P32496	274 aa		6.98	□□□□□ -1.29
RPT3	YDR394W	RVS167	P39743	482 aa	Known RBP	6.98	□□□□□ -1.29
RPT3	YDR394W	SUM1	P46676	1062 aa		6.98	□□□□□ -1.29
RPT3	YDR394W	YNL193W	P53870	558 aa		6.98	□□□□□ -1.29
RPT3	YDR394W	RAT1	Q02792	1006 aa	Known RBP	6.98	□□□□□ -1.29
RPT3	YDR394W	LCD1	Q04377	747 aa		6.98	□□□□□ -1.29
RPT3	YDR394W	DIB1	Q06819	143 aa	Predicted RBP	6.98	□□□□□ -1.29
RPT3	YDR394W	PEX19	Q07418	342 aa		6.98	□□□□□ -1.29
RPT3	YDR394W	PRX1	P34227	261 aa	Known RBP	6.97	□□□□□ -1.29
RPT3	YDR394W	RKM3	P38222	552 aa		6.97	□□□□□ -1.29
RPT3	YDR394W	YHL017W	P38745	532 aa		6.97	□□□□□ -1.29
RPT3	YDR394W	UTP22	P53254	1237 aa	Predicted RBP	6.97	□□□□□ -1.29
RPT3	YDR394W	HPF1	Q05164	967 aa		6.97	□□□□□ -1.29
RPT3	YDR394W	BUG1	Q12191	341 aa		6.97	□□□□□ -1.29
RPT3	YDR394W	SWI5	P08153	709 aa		6.96	□□□□□ -1.3
RPT3	YDR394W	MATALPHA2	P0CY08	210 aa		6.96	□□□□□ -1.3
RPT3	YDR394W	HMLALPHA2	P0CY09	210 aa		6.96	□□□□□ -1.3
RPT3	YDR394W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	6.96	□□□□□ -1.3	not detected
RPT3	YDR394W	GEF1	P37020	779 aa		6.96	□□□□□ -1.3
RPT3	YDR394W	NPR2	P39923	615 aa		6.96	□□□□□ -1.3
RPT3	YDR394W	NUG1	P40010	520 aa	Known RBP	6.96	□□□□□ -1.3
RPT3	YDR394W	ENP2	P48234	707 aa	Known RBP	6.96	□□□□□ -1.3
RPT3	YDR394W	CWH41	P53008	833 aa		6.96	□□□□□ -1.3
RPT3	YDR394W	YGL081W	P53156	320 aa		6.96	□□□□□ -1.3
RPT3	YDR394W	YGR035C	P53222	116 aa		6.96	□□□□□ -1.3
RPT3	YDR394W	RSC1	P53236	928 aa		6.96	□□□□□ -1.3
RPT3	YDR394W	ELG1	Q12050	791 aa		6.96	□□□□□ -1.3
RPT3	YDR394W	YPL150W	Q12152	901 aa		6.96	□□□□□ -1.3
RPT3	YDR394W	SSF2	Q12153	453 aa	Predicted RBP	6.96	□□□□□ -1.3
RPT3	YDR394W	RRI2	Q12348	645 aa		6.96	□□□□□ -1.3
RPT3	YDR394W	TAF13	P11747	167 aa		6.95	□□□□□ -1.3
RPT3	YDR394W	PEP3	P27801	918 aa		6.95	□□□□□ -1.3
RPT3	YDR394W	SIS2	P36024	562 aa		6.95	□□□□□ -1.3
RPT3	YDR394W	MET1	P36150	593 aa		6.95	□□□□□ -1.3
RPT3	YDR394W	CIC1	P38779	376 aa	Known RBP	6.95	□□□□□ -1.3
RPT3	YDR394W	CCT5	P40413	562 aa	Known RBP	6.95	□□□□□ -1.3
RPT3	YDR394W	CTF18	P49956	741 aa		6.95	□□□□□ -1.3
RPT3	YDR394W	YKE2	P52553	114 aa		6.95	□□□□□ -1.3
RPT3	YDR394W	ARP5	P53946	755 aa		6.95	□□□□□ -1.3
RPT3	YDR394W	YMR074C	Q04773	145 aa		6.95	□□□□□ -1.3
RPT3	YDR394W	UBP1	P25037	809 aa		6.94	□□□□□ -1.3
RPT3	YDR394W	AHP1	P38013	176 aa	Known RBP	6.94	□□□□□ -1.3
RPT3	YDR394W	YFL034W	P43564	1073 aa		6.94	□□□□□ -1.3
RPT3	YDR394W	UBP15	P50101	1230 aa		6.94	□□□□□ -1.3
RPT3	YDR394W	ECM23	Q02710	187 aa		6.94	□□□□□ -1.3
RPT3	YDR394W	YPQ2	Q06328	317 aa		6.94	□□□□□ -1.3
RPT3	YDR394W	APC11	Q12157	165 aa		6.94	□□□□□ -1.3
RPT3	YDR394W	TAH18	Q12181	623 aa		6.94	□□□□□ -1.3
RPT3	YDR394W	LAM4	P38800	1345 aa		6.94	□□□□□ -1.3
RPT3	YDR394W	CPA2	P03965	1118 aa	Known RBP	6.93	□□□□□ -1.3
RPT3	YDR394W	RPS6A	P0CX37	236 aa	Known RBP	6.93	□□□□□ -1.3
RPT3	YDR394W	RPS6B	P0CX38	236 aa	Predicted RBP	6.93	□□□□□ -1.3
RPT3	YDR394W	GLO3	P38682	493 aa	Known RBP	6.93	□□□□□ -1.3
RPT3	YDR394W	CRG1	P38892	291 aa	RIP-Chip data	6.93	□□□□□ -1.3	not detected
RPT3	YDR394W	YMR147W	P40218	223 aa	Known RBP	6.93	□□□□□ -1.3
RPT3	YDR394W	KTR7	P40504	517 aa		6.93	□□□□□ -1.3
RPT3	YDR394W	VID28	P40547	921 aa		6.93	□□□□□ -1.3
RPT3	YDR394W	IOC3	P43596	787 aa		6.93	□□□□□ -1.3
RPT3	YDR394W	JJJ2	P46997	583 aa		6.93	□□□□□ -1.3
RPT3	YDR394W	KAR5	Q04746	504 aa		6.93	□□□□□ -1.3
RPT3	YDR394W	DPH6	Q12429	685 aa		6.93	□□□□□ -1.3
RPT3	YDR394W	TSC13	Q99190	310 aa		6.93	□□□□□ -1.3
RPT3	YDR394W	RIM15	P43565	1770 aa		6.92	□□□□□ -1.3
RPT3	YDR394W	CYB2	P00175	591 aa		6.92	□□□□□ -1.3
RPT3	YDR394W	NGR1	P32831	672 aa	Known RBP	6.92	□□□□□ -1.3
RPT3	YDR394W	SHM1	P37292	490 aa	Predicted RBP	6.92	□□□□□ -1.3
RPT3	YDR394W	ALA1	P40825	983 aa	Known RBP	6.92	□□□□□ -1.3
RPT3	YDR394W	BUD6	P41697	788 aa		6.92	□□□□□ -1.3
RPT3	YDR394W	SYF1	Q04048	859 aa	Predicted RBP	6.92	□□□□□ -1.3
RPT3	YDR394W	YLR407W	Q06070	228 aa		6.92	□□□□□ -1.3
RPT3	YDR394W	ESF1	Q06344	628 aa	Known RBP	6.92	□□□□□ -1.3
RPT3	YDR394W	THI3	Q07471	609 aa		6.92	□□□□□ -1.3
RPT3	YDR394W	MBR1	P23493	339 aa		6.91	□□□□□ -1.3
RPT3	YDR394W	IMP2'	P32351	346 aa		6.91	□□□□□ -1.3
RPT3	YDR394W	EBP2	P36049	427 aa	Known RBP	6.91	□□□□□ -1.3
RPT3	YDR394W	IRC8	P47046	822 aa		6.91	□□□□□ -1.3
RPT3	YDR394W	CUZ1	P53899	274 aa		6.91	□□□□□ -1.3
RPT3	YDR394W	SPN1	Q06505	410 aa	Predicted RBP	6.91	□□□□□ -1.3

Retrieved 100 of 5,963 RNA–protein pairs in 28.9 ms