RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 UBXN8O00124 270 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 NOL3O60936 208 aaKnown RBP13.68□□□□□ -0.22
VPS33A-208ENST00000543633 LDLRP01130 860 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 MMP2P08253 660 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 ZNF12P17014 697 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 HLA-DPA1P20036 260 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 IGFBP6P24592 240 aaPredicted RBP13.68□□□□□ -0.22
VPS33A-208ENST00000543633 CD86P42081 329 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 GSK3BP49841 420 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 MLLT6P55198 1093 aaPredicted RBP13.68□□□□□ -0.22
VPS33A-208ENST00000543633 KCNK10P57789 538 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 RPS6KA2Q15349 733 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 UPP1Q16831 310 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 ZNF829Q3KNS6 432 aaPredicted RBP13.68□□□□□ -0.22
VPS33A-208ENST00000543633 PDCD4Q53EL6 469 aaKnown RBP13.68□□□□□ -0.22
VPS33A-208ENST00000543633 TIGD5Q53EQ6 642 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 NOMO2Q5JPE7 1267 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 CCNYL2Q5T2Q4 361 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 ACBD5Q5T8D3 534 aaPredicted RBP13.68□□□□□ -0.22
VPS33A-208ENST00000543633 TAF2Q6P1X5 1199 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 FKBP9P1Q75LS8 142 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 TLK2Q86UE8 772 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 DDIASQ8IXT1 998 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 SNX31Q8N9S9 440 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 KLHL23Q8NBE8 558 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 PDPRQ8NCN5 879 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 TUBGCP3Q96CW5 907 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 COG8Q96MW5 612 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 ALG2Q9H553 416 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 NT5MQ9NPB1 228 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 PRDM5Q9NQX1 630 aaPredicted RBP13.68□□□□□ -0.22
VPS33A-208ENST00000543633 TMEM248Q9NWD8 314 aa13.68□□□□□ -0.22
VPS33A-208ENST00000543633 GMPR2Q9P2T1 348 aaKnown RBP13.68□□□□□ -0.22
VPS33A-208ENST00000543633 LEF1Q9UJU2 399 aaPredicted RBP13.68□□□□□ -0.22
VPS33A-208ENST00000543633 EI24O14681 340 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 GIPC1O14908 333 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 LDB2O43679 373 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 GLP2RO95838 553 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 MT-CO1P00395 513 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 FGF1P05230 155 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 MTHFD2P13995 350 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 HGFP14210 728 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 VARSP26640 1264 aaKnown RBP13.67□□□□□ -0.22
VPS33A-208ENST00000543633 OXTRP30559 389 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 ENTPD1P49961 510 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 CPT1AP50416 773 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 ARSDP51689 593 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 ADARB1P78563 741 aaKnown RBP13.67□□□□□ -0.22
VPS33A-208ENST00000543633 TUBA3CQ13748 450 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 NFYCQ13952 458 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 GRB7Q14451 532 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 CYP51A1Q16850 503 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 GEN1Q17RS7 908 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 TYSND1Q2T9J0 566 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 CYBRD1Q53TN4 286 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 SIRPB2Q5JXA9 342 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 PLEKHH3Q7Z736 793 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 ZNF683Q8IZ20 524 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 CYGBQ8WWM9 190 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 CASP10Q92851 521 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 ABTB1Q969K4 478 aaPredicted RBP13.67□□□□□ -0.22
VPS33A-208ENST00000543633 KIAA1191Q96A73 305 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 HSPBAP1Q96EW2 488 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 GAD1Q99259 594 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 KCTD14Q9BQ13 255 aaPredicted RBP13.67□□□□□ -0.22
VPS33A-208ENST00000543633 AARSD1Q9BTE6 412 aaKnown RBP13.67□□□□□ -0.22
VPS33A-208ENST00000543633 DERL2Q9GZP9 239 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 SYTL2Q9HCH5 934 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 ZIM2Q9NZV7 527 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 GMIPQ9P107 970 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 MARCH4Q9P2E8 410 aaPredicted RBP13.67□□□□□ -0.22
VPS33A-208ENST00000543633 OAS3Q9Y6K5 1087 aaKnown RBP13.67□□□□□ -0.22
VPS33A-208ENST00000543633 CROCCQ5TZA2 2017 aa13.67□□□□□ -0.22
VPS33A-208ENST00000543633 SYCE1LA8MT33 242 aa13.66□□□□□ -0.22
VPS33A-208ENST00000543633 M0QZQ0 153 aa13.66□□□□□ -0.22
VPS33A-208ENST00000543633 STX16O14662 325 aa13.66□□□□□ -0.22
VPS33A-208ENST00000543633 TULP3O75386 442 aa13.66□□□□□ -0.22
VPS33A-208ENST00000543633 RPP40O75818 363 aaKnown RBP13.66□□□□□ -0.22
VPS33A-208ENST00000543633 RPS17P08708 135 aaKnown RBP13.66□□□□□ -0.22
VPS33A-208ENST00000543633 ATXN1LP0C7T5 689 aaKnown RBP13.66□□□□□ -0.22
VPS33A-208ENST00000543633 TMBIM6P55061 237 aa13.66□□□□□ -0.22
VPS33A-208ENST00000543633 CTBSQ01459 385 aa13.66□□□□□ -0.22
VPS33A-208ENST00000543633 RAB39AQ14964 217 aa13.66□□□□□ -0.22
VPS33A-208ENST00000543633 OR4D1Q15615 310 aa13.66□□□□□ -0.22
VPS33A-208ENST00000543633 XKR7Q5GH72 579 aa13.66□□□□□ -0.22
VPS33A-208ENST00000543633 DUS1LQ6P1R4 473 aaKnown RBP13.66□□□□□ -0.22
VPS33A-208ENST00000543633 ZNF549Q6P9A3 640 aa13.66□□□□□ -0.22
VPS33A-208ENST00000543633 ELMSAN1Q6PJG2 1045 aa13.66□□□□□ -0.22
VPS33A-208ENST00000543633 PIM3Q86V86 326 aa13.66□□□□□ -0.22
VPS33A-208ENST00000543633 FAM110BQ8TC76 370 aa13.66□□□□□ -0.22
VPS33A-208ENST00000543633 THAP11Q96EK4 314 aa13.66□□□□□ -0.22
VPS33A-208ENST00000543633 LRCH3Q96II8 777 aa13.66□□□□□ -0.22
VPS33A-208ENST00000543633 RDH12Q96NR8 316 aa13.66□□□□□ -0.22
VPS33A-208ENST00000543633 CCDC68Q9H2F9 335 aa13.66□□□□□ -0.22
VPS33A-208ENST00000543633 TUBB1Q9H4B7 451 aa13.66□□□□□ -0.22
VPS33A-208ENST00000543633 SP110Q9HB58 689 aa13.66□□□□□ -0.22
VPS33A-208ENST00000543633 EGFL7Q9UHF1 273 aa13.66□□□□□ -0.22
VPS33A-208ENST00000543633 CDC14AQ9UNH5 594 aa13.66□□□□□ -0.22
VPS33A-208ENST00000543633 TLR6Q9Y2C9 796 aa13.66□□□□□ -0.22
VPS33A-208ENST00000543633 ARL5CA6NH57 179 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms