RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	TY1A-NL1	Q12391	440 aa	Known RBP	7.65	□□□□□ -1.18
RRP40	YOL142W	BUD4	P47136	1447 aa		7.64	□□□□□ -1.19
RRP40	YOL142W	HTS1	P07263	546 aa	Known RBP	7.64	□□□□□ -1.19
RRP40	YOL142W	TAT1	P38085	619 aa		7.64	□□□□□ -1.19
RRP40	YOL142W	MTC5	Q03897	1148 aa		7.64	□□□□□ -1.19
RRP40	YOL142W	REV3	P14284	1504 aa		7.63	□□□□□ -1.19
RRP40	YOL142W	ERS1	P17261	260 aa		7.62	□□□□□ -1.19
RRP40	YOL142W	UGA4	P32837	571 aa		7.62	□□□□□ -1.19
RRP40	YOL142W	MAE1	P36013	669 aa	Known RBP	7.62	□□□□□ -1.19
RRP40	YOL142W	MGE1	P38523	228 aa		7.62	□□□□□ -1.19
RRP40	YOL142W	CCT8	P47079	568 aa	Known RBP	7.62	□□□□□ -1.19
RRP40	YOL142W	YIG1	Q08956	461 aa		7.62	□□□□□ -1.19
RRP40	YOL142W	ATG2	P53855	1592 aa		7.62	□□□□□ -1.19
RRP40	YOL142W	SIN3	P22579	1536 aa		7.62	□□□□□ -1.19
RRP40	YOL142W	MCA1	Q08601	432 aa		7.61	□□□□□ -1.19
RRP40	YOL142W	ECM5	Q03214	1411 aa		7.61	□□□□□ -1.19
RRP40	YOL142W	KAR2	P16474	682 aa	Known RBP	7.6	□□□□□ -1.19
RRP40	YOL142W	FAA3	P39002	694 aa		7.6	□□□□□ -1.19
RRP40	YOL142W	LSB3	P43603	459 aa	Known RBP	7.6	□□□□□ -1.19
RRP40	YOL142W	PEP1	P32319	1579 aa		7.59	□□□□□ -1.19
RRP40	YOL142W	RSC6	P25632	483 aa		7.59	□□□□□ -1.19
RRP40	YOL142W	ASF1	P32447	279 aa		7.59	□□□□□ -1.19
RRP40	YOL142W	ARI1	P53111	347 aa	Known RBP	7.59	□□□□□ -1.19
RRP40	YOL142W	UTP22	P53254	1237 aa	Predicted RBP	7.59	□□□□□ -1.19
RRP40	YOL142W	FAR11	P53917	953 aa		7.59	□□□□□ -1.19
RRP40	YOL142W	ULP1	Q02724	621 aa		7.59	□□□□□ -1.19
RRP40	YOL142W	MDS3	P53094	1487 aa		7.58	□□□□□ -1.2
RRP40	YOL142W	HXK1	P04806	485 aa	Known RBP	7.58	□□□□□ -1.2
RRP40	YOL142W	YJR107W	P47145	328 aa		7.58	□□□□□ -1.2
RRP40	YOL142W	GCV1	P48015	400 aa		7.58	□□□□□ -1.2
RRP40	YOL142W	KIP3	P53086	805 aa	Known RBP	7.57	□□□□□ -1.2
RRP40	YOL142W	YMR074C	Q04773	145 aa		7.57	□□□□□ -1.2
RRP40	YOL142W	SSK2	P53599	1579 aa		7.56	□□□□□ -1.2
RRP40	YOL142W	TY1A-LR4	P0C2I8	440 aa	Known RBP	7.56	□□□□□ -1.2
RRP40	YOL142W	TY1A-DR6	P0CX70	440 aa		7.56	□□□□□ -1.2
RRP40	YOL142W	TY1A-ER1	P0CX71	440 aa		7.56	□□□□□ -1.2
RRP40	YOL142W	TY1A-LR2	P0CX72	440 aa		7.56	□□□□□ -1.2
RRP40	YOL142W	TY1A-PL	P0CX73	440 aa		7.56	□□□□□ -1.2
RRP40	YOL142W	TY1A-JR1	P0CX74	440 aa		7.56	□□□□□ -1.2
RRP40	YOL142W	TY1A-LR3	P0CX75	440 aa		7.56	□□□□□ -1.2
RRP40	YOL142W	TY1A-ML2	P0CX76	440 aa		7.56	□□□□□ -1.2
RRP40	YOL142W	MCM2	P29469	868 aa		7.56	□□□□□ -1.2
RRP40	YOL142W	EXO5	P38289	585 aa		7.56	□□□□□ -1.2
RRP40	YOL142W	SHU2	P38957	223 aa		7.56	□□□□□ -1.2
RRP40	YOL142W	YGR122W	P53272	402 aa		7.56	□□□□□ -1.2
RRP40	YOL142W	NCE103	P53615	221 aa		7.56	□□□□□ -1.2
RRP40	YOL142W	MEC3	Q02574	474 aa		7.56	□□□□□ -1.2
RRP40	YOL142W	NOG1	Q02892	647 aa	Known RBP	7.56	□□□□□ -1.2
RRP40	YOL142W	YPL109C	Q02981	657 aa		7.56	□□□□□ -1.2
RRP40	YOL142W	YPL034W	Q03083	165 aa		7.56	□□□□□ -1.2
RRP40	YOL142W	TY1A-GR1	Q12085	440 aa		7.56	□□□□□ -1.2
RRP40	YOL142W	TY1A-PR3	Q6Q5H1	440 aa	Known RBP	7.56	□□□□□ -1.2
RRP40	YOL142W	TY1A-OL	Q92392	440 aa	Known RBP	7.56	□□□□□ -1.2
RRP40	YOL142W	YKL077W	P36081	392 aa		7.55	□□□□□ -1.2
RRP40	YOL142W	RSM26	P47141	266 aa		7.55	□□□□□ -1.2
RRP40	YOL142W	ADI1	Q03677	179 aa		7.55	□□□□□ -1.2
RRP40	YOL142W	REC8	Q12188	680 aa		7.55	□□□□□ -1.2
RRP40	YOL142W	SQT1	P35184	431 aa		7.54	□□□□□ -1.2
RRP40	YOL142W	RPS26A	P39938	119 aa	Known RBP	7.54	□□□□□ -1.2
RRP40	YOL142W	RPS26B	P39939	119 aa	Known RBP	7.54	□□□□□ -1.2
RRP40	YOL142W	FYV10	P40492	516 aa		7.54	□□□□□ -1.2
RRP40	YOL142W	YOR223W	Q12015	292 aa		7.54	□□□□□ -1.2
RRP40	YOL142W	YLL054C	Q12244	843 aa		7.54	□□□□□ -1.2
RRP40	YOL142W	MSH3	P25336	1018 aa		7.53	□□□□□ -1.2
RRP40	YOL142W	SEC8	P32855	1065 aa		7.53	□□□□□ -1.2
RRP40	YOL142W	PEX13	P80667	386 aa		7.53	□□□□□ -1.2
RRP40	YOL142W	ESP1	Q03018	1630 aa		7.52	□□□□□ -1.2
RRP40	YOL142W	PGM1	P33401	570 aa	Known RBP	7.52	□□□□□ -1.21
RRP40	YOL142W	REI1	P38344	393 aa	Predicted RBP	7.52	□□□□□ -1.21
RRP40	YOL142W	PEX28	P38848	579 aa		7.52	□□□□□ -1.21
RRP40	YOL142W	SPR28	Q04921	423 aa		7.52	□□□□□ -1.21
RRP40	YOL142W	RAD2	P07276	1031 aa		7.51	□□□□□ -1.21
RRP40	YOL142W	CYC8	P14922	966 aa		7.51	□□□□□ -1.21
RRP40	YOL142W	ARL1	P38116	183 aa	Known RBP	7.51	□□□□□ -1.21
RRP40	YOL142W	SLS1	P42900	643 aa		7.51	□□□□□ -1.21
RRP40	YOL142W	NEM1	P38757	446 aa		7.5	□□□□□ -1.21
RRP40	YOL142W	AKR1	P39010	764 aa		7.5	□□□□□ -1.21
RRP40	YOL142W	PIC2	P40035	300 aa		7.5	□□□□□ -1.21
RRP40	YOL142W	MRPS18	P42847	217 aa		7.5	□□□□□ -1.21
RRP40	YOL142W	OYE2	Q03558	400 aa	Known RBP	7.5	□□□□□ -1.21
RRP40	YOL142W	DOT1	Q04089	582 aa	Known RBP	7.5	□□□□□ -1.21
RRP40	YOL142W	ALG6	Q12001	544 aa	Known RBP	7.5	□□□□□ -1.21
RRP40	YOL142W	MCD1	Q12158	566 aa		7.5	□□□□□ -1.21
RRP40	YOL142W	PRE9	P23638	258 aa	Known RBP	7.49	□□□□□ -1.21
RRP40	YOL142W	NAM7	P30771	971 aa	Known RBP	7.49	□□□□□ -1.21
RRP40	YOL142W	COQ2	P32378	372 aa		7.48	□□□□□ -1.21
RRP40	YOL142W	MTR4	P47047	1073 aa	Known RBP	7.48	□□□□□ -1.21
RRP40	YOL142W	YGL140C	P53120	1219 aa		7.48	□□□□□ -1.21
RRP40	YOL142W	GPT2	P36148	743 aa		7.47	□□□□□ -1.21
RRP40	YOL142W	SAF1	P38352	637 aa		7.47	□□□□□ -1.21
RRP40	YOL142W	VMA4	P22203	233 aa	Known RBP	7.46	□□□□□ -1.22
RRP40	YOL142W	UTP5	Q04177	643 aa	Known RBP	7.46	□□□□□ -1.22
RRP40	YOL142W	GIC2	Q06648	383 aa		7.46	□□□□□ -1.22
RRP40	YOL142W	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	7.46	□□□□□ -1.22	not detected
RRP40	YOL142W	HEM13	P11353	328 aa	Known RBP	7.45	□□□□□ -1.22
RRP40	YOL142W	SEC23	P15303	768 aa	Known RBP	7.45	□□□□□ -1.22
RRP40	YOL142W	RDH54	P38086	958 aa		7.45	□□□□□ -1.22
RRP40	YOL142W	YGR045C	P53229	120 aa		7.45	□□□□□ -1.22
RRP40	YOL142W	AVO1	Q08236	1176 aa		7.45	□□□□□ -1.22
RRP40	YOL142W	YLR122C	Q12312	125 aa		7.45	□□□□□ -1.22

Retrieved 100 of 5,963 RNA–protein pairs in 11.9 ms