RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeastyeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NIP1YMR309C YMR074CQ04773 145 aa1.29□□□□□ -2.2
NIP1YMR309C LSO1Q3E827 93 aa1.29□□□□□ -2.2
NIP1YMR309C PRP5P21372 849 aaPredicted RBP1.28□□□□□ -2.2
NIP1YMR309C CPS1P27614 576 aa1.28□□□□□ -2.2
NIP1YMR309C MSH4P40965 878 aaPredicted RBP1.28□□□□□ -2.2
NIP1YMR309C MEC3Q02574 474 aa1.28□□□□□ -2.2
NIP1YMR309C SSY1Q03770 852 aa1.28□□□□□ -2.2
NIP1YMR309C TRE1Q08919 783 aa1.28□□□□□ -2.2
NIP1YMR309C YVC1Q12324 675 aa1.28□□□□□ -2.2
NIP1YMR309C SOD2P00447 233 aa1.28□□□□□ -2.2
NIP1YMR309C HTS1P07263 546 aaKnown RBP1.28□□□□□ -2.2
NIP1YMR309C RRN6P32786 894 aa1.28□□□□□ -2.2
NIP1YMR309C RIM11P38615 370 aa1.28□□□□□ -2.2
NIP1YMR309C SUT1P53032 299 aaKnown RBP1.28□□□□□ -2.2
NIP1YMR309C MRPL22P53881 309 aa1.28□□□□□ -2.2
NIP1YMR309C CTR9P89105 1077 aa1.28□□□□□ -2.2
NIP1YMR309C RPB10P22139 70 aa1.27□□□□□ -2.21
NIP1YMR309C EAR1Q03212 550 aa1.27□□□□□ -2.21
NIP1YMR309C PNP1Q05788 311 aa1.27□□□□□ -2.21
NIP1YMR309C YDL177CQ12257 170 aa1.27□□□□□ -2.21
NIP1YMR309C NPR1P22211 790 aa1.27□□□□□ -2.21
NIP1YMR309C PRO1P32264 428 aa1.27□□□□□ -2.21
NIP1YMR309C SMY2P32909 740 aaKnown RBP1.27□□□□□ -2.21
NIP1YMR309C ARL1P38116 183 aaKnown RBP1.27□□□□□ -2.21
NIP1YMR309C CMR1Q12510 522 aaKnown RBP1.27□□□□□ -2.21
NIP1YMR309C YLR358CO13565 187 aa1.26□□□□□ -2.21
NIP1YMR309C COBP00163 385 aa1.26□□□□□ -2.21
NIP1YMR309C SSA4P22202 642 aaKnown RBP1.26□□□□□ -2.21
NIP1YMR309C NNK1P36003 928 aa1.26□□□□□ -2.21
NIP1YMR309C SHM2P37291 469 aaKnown RBP1.26□□□□□ -2.21
NIP1YMR309C REI1P38344 393 aaPredicted RBP1.26□□□□□ -2.21
NIP1YMR309C SAP155P43612 1002 aa1.26□□□□□ -2.21
NIP1YMR309C UTP22P53254 1237 aaPredicted RBP1.26□□□□□ -2.21
NIP1YMR309C CLU1Q03690 1277 aaKnown RBP1.26□□□□□ -2.21
NIP1YMR309C TOD6P34219 525 aa1.26□□□□□ -2.21
NIP1YMR309C PTC7P38797 343 aa1.26□□□□□ -2.21
NIP1YMR309C YGR045CP53229 120 aa1.26□□□□□ -2.21
NIP1YMR309C RSC4Q02206 625 aa1.26□□□□□ -2.21
NIP1YMR309C YPL277CQ08989 487 aa1.26□□□□□ -2.21
NIP1YMR309C PRE10P21242 288 aaKnown RBP RIP-Chip data1.25□□□□□ -2.21not detected
NIP1YMR309C DUR3P33413 735 aa1.25□□□□□ -2.21
NIP1YMR309C YBR056W-AI2HB52 66 aa1.25□□□□□ -2.21
NIP1YMR309C RPS13P05756 151 aaKnown RBP1.25□□□□□ -2.21
NIP1YMR309C CTS1P29029 562 aa1.25□□□□□ -2.21
NIP1YMR309C GTS1P40956 396 aa1.25□□□□□ -2.21
NIP1YMR309C SNO2P53823 222 aa1.25□□□□□ -2.21
NIP1YMR309C PUS7Q08647 676 aaKnown RBP1.25□□□□□ -2.21
NIP1YMR309C ALG6Q12001 544 aaKnown RBP1.25□□□□□ -2.21
NIP1YMR309C SAM35P14693 329 aa1.24□□□□□ -2.21
NIP1YMR309C BOL3P39724 118 aa1.24□□□□□ -2.21
NIP1YMR309C ELA1P53861 379 aaPredicted RBP1.24□□□□□ -2.21
NIP1YMR309C YML083CQ04526 418 aa1.24□□□□□ -2.21
NIP1YMR309C FUR4P05316 633 aaKnown RBP1.24□□□□□ -2.21
NIP1YMR309C TY1A-LR4P0C2I8 440 aaKnown RBP1.24□□□□□ -2.21
NIP1YMR309C TY1A-DR6P0CX70 440 aa1.24□□□□□ -2.21
NIP1YMR309C TY1A-ER1P0CX71 440 aa1.24□□□□□ -2.21
NIP1YMR309C TY1A-LR2P0CX72 440 aa1.24□□□□□ -2.21
NIP1YMR309C TY1A-PLP0CX73 440 aa1.24□□□□□ -2.21
NIP1YMR309C TY1A-JR1P0CX74 440 aa1.24□□□□□ -2.21
NIP1YMR309C TY1A-LR3P0CX75 440 aa1.24□□□□□ -2.21
NIP1YMR309C TY1A-ML2P0CX76 440 aa1.24□□□□□ -2.21
NIP1YMR309C ETP1P38748 585 aaKnown RBP1.24□□□□□ -2.21
NIP1YMR309C ENV11P53246 860 aa1.24□□□□□ -2.21
NIP1YMR309C UFD2P54860 961 aa1.24□□□□□ -2.21
NIP1YMR309C RPL34AP87262 121 aaPredicted RBP1.24□□□□□ -2.21
NIP1YMR309C YDR132CQ03900 495 aa1.24□□□□□ -2.21
NIP1YMR309C AVO1Q08236 1176 aa1.24□□□□□ -2.21
NIP1YMR309C NOB1Q08444 459 aaKnown RBP1.24□□□□□ -2.21
NIP1YMR309C TY1A-GR1Q12085 440 aa1.24□□□□□ -2.21
NIP1YMR309C TY1A-PR3Q6Q5H1 440 aaKnown RBP1.24□□□□□ -2.21
NIP1YMR309C TY1A-OLQ92392 440 aaKnown RBP1.24□□□□□ -2.21
NIP1YMR309C MDL2P33311 773 aa1.23□□□□□ -2.21
NIP1YMR309C ECM2P38241 364 aaKnown RBP1.23□□□□□ -2.21
NIP1YMR309C FOL2P51601 243 aaKnown RBP1.23□□□□□ -2.21
NIP1YMR309C YAF9P53930 226 aa1.23□□□□□ -2.21
NIP1YMR309C PMT7Q06644 662 aa1.23□□□□□ -2.21
NIP1YMR309C FLP1P03870 423 aa1.23□□□□□ -2.21
NIP1YMR309C SRO9P25567 434 aaKnown RBP1.23□□□□□ -2.21
NIP1YMR309C YHL012WP38709 493 aa1.23□□□□□ -2.21
NIP1YMR309C TAT2P38967 592 aa1.23□□□□□ -2.21
NIP1YMR309C NUT1P53114 1132 aa1.23□□□□□ -2.21
NIP1YMR309C TPP1Q03796 238 aa1.23□□□□□ -2.21
NIP1YMR309C PUS9Q12069 462 aa1.23□□□□□ -2.21
NIP1YMR309C EXO5P38289 585 aa1.22□□□□□ -2.21
NIP1YMR309C MPT5P39016 859 aaKnown RBP RIP-Chip data1.22□□□□□ -2.21not detected
NIP1YMR309C BDF2Q07442 638 aa1.22□□□□□ -2.21
NIP1YMR309C RLF2Q12495 606 aa1.22□□□□□ -2.21
NIP1YMR309C RET1P22276 1149 aaKnown RBP1.21□□□□□ -2.22
NIP1YMR309C DOM34P33309 386 aa1.21□□□□□ -2.22
NIP1YMR309C TRM2P33753 639 aa1.21□□□□□ -2.22
NIP1YMR309C YKL077WP36081 392 aa1.21□□□□□ -2.22
NIP1YMR309C NEM1P38757 446 aa1.21□□□□□ -2.22
NIP1YMR309C YAR028WP39548 234 aa1.21□□□□□ -2.22
NIP1YMR309C SLS1P42900 643 aa1.21□□□□□ -2.22
NIP1YMR309C YNL011CP53980 444 aa1.21□□□□□ -2.22
NIP1YMR309C KAR5Q04746 504 aa1.21□□□□□ -2.22
NIP1YMR309C YLR257WQ06146 321 aaKnown RBP1.21□□□□□ -2.22
NIP1YMR309C HRK1Q08732 759 aaKnown RBP1.21□□□□□ -2.22
NIP1YMR309C MNL2Q12205 849 aa1.21□□□□□ -2.22
NIP1YMR309C SHU2P38957 223 aa1.21□□□□□ -2.22
Retrieved 100 of 5,963 RNA–protein pairs in 127.7 ms