RNA–Protein interactions for RNA: YLR055C

SPT8, Transcript of Subunit of the SAGA transcriptional regulatory complex, yeastyeast

Gene SPT8, Length 1,809 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SPT8YLR055C PRP31P49704 494 aaPredicted RBP12.48□□□□□ -0.41
SPT8YLR055C COG4Q06096 861 aa12.48□□□□□ -0.41
SPT8YLR055C OSW7P43611 510 aa12.48□□□□□ -0.41
SPT8YLR055C ENP2P48234 707 aaKnown RBP12.48□□□□□ -0.41
SPT8YLR055C YLR407WQ06070 228 aa12.48□□□□□ -0.41
SPT8YLR055C ESF1Q06344 628 aaKnown RBP12.48□□□□□ -0.41
SPT8YLR055C PET111P08468 800 aa12.47□□□□□ -0.41
SPT8YLR055C PEP3P27801 918 aa12.47□□□□□ -0.41
SPT8YLR055C IRC8P47046 822 aa12.47□□□□□ -0.41
SPT8YLR055C YKT6P36015 200 aaKnown RBP12.46□□□□□ -0.41
SPT8YLR055C RFT1P38206 574 aaPredicted RBP12.46□□□□□ -0.41
SPT8YLR055C EMP47P43555 445 aa12.46□□□□□ -0.41
SPT8YLR055C PEX21P50091 288 aa12.46□□□□□ -0.41
SPT8YLR055C GSC2P40989 1895 aa12.46□□□□□ -0.41
SPT8YLR055C IMP2'P32351 346 aa12.46□□□□□ -0.42
SPT8YLR055C SPC110P32380 944 aa12.46□□□□□ -0.42
SPT8YLR055C PIP2P52960 996 aa12.46□□□□□ -0.42
SPT8YLR055C OPI1P21957 404 aa12.45□□□□□ -0.42
SPT8YLR055C SSA4P22202 642 aaKnown RBP12.45□□□□□ -0.42
SPT8YLR055C CLB5P30283 435 aa12.45□□□□□ -0.42
SPT8YLR055C GEF1P37020 779 aa12.45□□□□□ -0.42
SPT8YLR055C MTC3P53077 123 aa12.45□□□□□ -0.42
SPT8YLR055C FLO1P32768 1537 aa12.45□□□□□ -0.42
SPT8YLR055C PGI1P12709 554 aaKnown RBP12.44□□□□□ -0.42
SPT8YLR055C NPL4P33755 580 aa12.44□□□□□ -0.42
SPT8YLR055C UTP7P40055 554 aaKnown RBP12.44□□□□□ -0.42
SPT8YLR055C KAR5Q04746 504 aa12.44□□□□□ -0.42
SPT8YLR055C ISW2Q08773 1120 aa12.44□□□□□ -0.42
SPT8YLR055C CBP1P07252 654 aa12.44□□□□□ -0.42
SPT8YLR055C DEP1P31385 405 aa12.44□□□□□ -0.42
SPT8YLR055C IOC3P43596 787 aa12.44□□□□□ -0.42
SPT8YLR055C YJL171CP46992 396 aa12.44□□□□□ -0.42
SPT8YLR055C NSG2P53898 299 aa12.44□□□□□ -0.42
SPT8YLR055C ECM23Q02710 187 aa12.44□□□□□ -0.42
SPT8YLR055C PKH3Q03306 898 aaPredicted RBP12.44□□□□□ -0.42
SPT8YLR055C TAH18Q12181 623 aa12.44□□□□□ -0.42
SPT8YLR055C LAM4P38800 1345 aa12.43□□□□□ -0.42
SPT8YLR055C SPT21P35209 758 aa12.43□□□□□ -0.42
SPT8YLR055C CLB1P24868 471 aa12.42□□□□□ -0.42
SPT8YLR055C VHR2P40041 505 aa12.42□□□□□ -0.42
SPT8YLR055C PET123P17558 318 aa12.41□□□□□ -0.42
SPT8YLR055C CDC15P27636 974 aa12.41□□□□□ -0.42
SPT8YLR055C PSY4P38193 441 aa12.41□□□□□ -0.42
SPT8YLR055C EPL1P43572 832 aa12.41□□□□□ -0.42
SPT8YLR055C YCG1Q06680 1035 aa12.41□□□□□ -0.42
SPT8YLR055C PCH2P38126 564 aa12.41□□□□□ -0.42
SPT8YLR055C UBP10P53874 792 aaPredicted RBP12.41□□□□□ -0.42
SPT8YLR055C APL4Q12028 832 aa12.41□□□□□ -0.42
SPT8YLR055C HSP82P02829 709 aaKnown RBP12.4□□□□□ -0.42
SPT8YLR055C MCM4P30665 933 aaKnown RBP12.4□□□□□ -0.42
SPT8YLR055C PEA2P40091 420 aa12.4□□□□□ -0.42
SPT8YLR055C MSH4P40965 878 aaPredicted RBP12.4□□□□□ -0.42
SPT8YLR055C VPS75P53853 264 aa12.4□□□□□ -0.42
SPT8YLR055C YKL068W-AQ3E826 78 aa12.4□□□□□ -0.42
SPT8YLR055C RGP1P16664 663 aa12.39□□□□□ -0.43
SPT8YLR055C RRP8P38961 392 aaKnown RBP12.39□□□□□ -0.43
SPT8YLR055C STR2P47164 639 aa12.39□□□□□ -0.43
SPT8YLR055C TLG2Q08144 397 aa12.39□□□□□ -0.43
SPT8YLR055C MET1P36150 593 aa12.39□□□□□ -0.43
SPT8YLR055C MRS2Q01926 470 aa12.39□□□□□ -0.43
SPT8YLR055C PPM2Q08282 695 aa12.39□□□□□ -0.43
SPT8YLR055C GIN4Q12263 1142 aa12.39□□□□□ -0.43
SPT8YLR055C HXK1P04806 485 aaKnown RBP12.38□□□□□ -0.43
SPT8YLR055C DIT2P21595 489 aa12.38□□□□□ -0.43
SPT8YLR055C AAD16Q02895 342 aa12.38□□□□□ -0.43
SPT8YLR055C COQ1P18900 473 aa12.37□□□□□ -0.43
SPT8YLR055C NIT1P40447 199 aa12.37□□□□□ -0.43
SPT8YLR055C RNT1Q02555 471 aa12.37□□□□□ -0.43
SPT8YLR055C TMA16Q08687 178 aa12.37□□□□□ -0.43
SPT8YLR055C YPL260WQ08977 551 aa12.37□□□□□ -0.43
SPT8YLR055C SKI2P35207 1287 aaKnown RBP RIP-Chip data12.37□□□□□ -0.43not detected
SPT8YLR055C APT1P49435 187 aaKnown RBP12.37□□□□□ -0.43
SPT8YLR055C CWC15Q03772 175 aaKnown RBP12.37□□□□□ -0.43
SPT8YLR055C KEL3Q08979 651 aaPredicted RBP12.37□□□□□ -0.43
SPT8YLR055C ADP1P25371 1049 aa12.36□□□□□ -0.43
SPT8YLR055C PCL8Q08966 492 aa12.36□□□□□ -0.43
SPT8YLR055C STE11P23561 717 aa12.35□□□□□ -0.43
SPT8YLR055C SML1Q04964 104 aa12.35□□□□□ -0.43
SPT8YLR055C MRD1Q06106 887 aaKnown RBP12.35□□□□□ -0.43
SPT8YLR055C SSF2Q12153 453 aaPredicted RBP12.35□□□□□ -0.43
SPT8YLR055C MCM16Q12262 181 aa12.35□□□□□ -0.43
SPT8YLR055C TOM1Q03280 3268 aa12.35□□□□□ -0.43
SPT8YLR055C PMA1P05030 918 aaKnown RBP12.34□□□□□ -0.43
SPT8YLR055C PDC1P06169 563 aaKnown RBP12.34□□□□□ -0.43
SPT8YLR055C PFK2P16862 959 aaKnown RBP RIP-Chip data12.34□□□□□ -0.43not detected
SPT8YLR055C RRP43P25359 394 aaPredicted RBP12.34□□□□□ -0.43
SPT8YLR055C MSH1P25846 959 aa12.34□□□□□ -0.43
SPT8YLR055C RRB1Q04225 511 aaKnown RBP12.34□□□□□ -0.43
SPT8YLR055C UBC1P21734 215 aaKnown RBP12.34□□□□□ -0.43
SPT8YLR055C RTS1P38903 757 aa12.34□□□□□ -0.43
SPT8YLR055C VPS41P38959 992 aa12.34□□□□□ -0.43
SPT8YLR055C CAJ1P39101 391 aa12.34□□□□□ -0.43
SPT8YLR055C YGL140CP53120 1219 aa12.34□□□□□ -0.43
SPT8YLR055C RBA50Q04418 439 aa12.34□□□□□ -0.43
SPT8YLR055C CHO2P05374 869 aaKnown RBP12.33□□□□□ -0.44
SPT8YLR055C PHO13P19881 312 aa12.33□□□□□ -0.44
SPT8YLR055C HCA4P20448 770 aaKnown RBP12.33□□□□□ -0.44
SPT8YLR055C RAD53P22216 821 aa12.33□□□□□ -0.44
SPT8YLR055C YIL089WP40500 205 aa12.33□□□□□ -0.44
SPT8YLR055C RPL22AP05749 121 aaKnown RBP12.32□□□□□ -0.44
Retrieved 100 of 5,963 RNA–protein pairs in 13.7 ms