RNA–Protein interactions for RNA: YDR394W

RPT3, Transcript of ATPase of the 19S regulatory particle of the 26S proteasome, yeast

Gene RPT3, Length 1,287 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPT3	YDR394W	MSP1	P28737	362 aa		7.14	□□□□□ -1.27
RPT3	YDR394W	ACO2	P39533	789 aa		7.14	□□□□□ -1.27
RPT3	YDR394W	CAF120	P53836	1060 aa		7.14	□□□□□ -1.27
RPT3	YDR394W	VPS64	Q03944	604 aa		7.14	□□□□□ -1.27
RPT3	YDR394W	PHM7	Q12252	991 aa		7.14	□□□□□ -1.27
RPT3	YDR394W	RNR2	P09938	399 aa	Known RBP	7.13	□□□□□ -1.27
RPT3	YDR394W	ECM21	P38167	1117 aa	Known RBP	7.13	□□□□□ -1.27
RPT3	YDR394W	MTC5	Q03897	1148 aa		7.13	□□□□□ -1.27
RPT3	YDR394W	YPR204W	Q08995	1032 aa		7.13	□□□□□ -1.27
RPT3	YDR394W	PDR18	P53756	1333 aa		7.12	□□□□□ -1.27
RPT3	YDR394W	SUP35	P05453	685 aa	Known RBP	7.12	□□□□□ -1.27
RPT3	YDR394W	NOT3	P06102	836 aa	Known RBP	7.12	□□□□□ -1.27
RPT3	YDR394W	TIF1	P10081	395 aa	Known RBP	7.12	□□□□□ -1.27
RPT3	YDR394W	RDS2	P19541	446 aa	Known RBP	7.12	□□□□□ -1.27
RPT3	YDR394W	SOH1	P38633	127 aa		7.12	□□□□□ -1.27
RPT3	YDR394W	HXT13	P39924	564 aa		7.12	□□□□□ -1.27
RPT3	YDR394W	DJP1	P40564	432 aa		7.12	□□□□□ -1.27
RPT3	YDR394W	MLC1	P53141	149 aa		7.12	□□□□□ -1.27
RPT3	YDR394W	UTP13	Q05946	817 aa	Known RBP	7.12	□□□□□ -1.27
RPT3	YDR394W	BRE1	Q07457	700 aa	Known RBP	7.12	□□□□□ -1.27
RPT3	YDR394W	COB	P00163	385 aa		7.11	□□□□□ -1.27
RPT3	YDR394W	SPT2	P06843	333 aa	Predicted RBP	7.11	□□□□□ -1.27
RPT3	YDR394W	APL2	P36000	726 aa	Predicted RBP	7.11	□□□□□ -1.27
RPT3	YDR394W	DOT5	P40553	215 aa		7.11	□□□□□ -1.27
RPT3	YDR394W	HXT17	P53631	564 aa		7.11	□□□□□ -1.27
RPT3	YDR394W	UBP2	Q01476	1272 aa		7.11	□□□□□ -1.27
RPT3	YDR394W	UTR2	P32623	467 aa		7.1	□□□□□ -1.27
RPT3	YDR394W	ATG3	P40344	310 aa		7.1	□□□□□ -1.27
RPT3	YDR394W	YIR007W	P40566	764 aa		7.1	□□□□□ -1.27
RPT3	YDR394W	YGL242C	P53066	181 aa		7.1	□□□□□ -1.27
RPT3	YDR394W	DMA2	P53924	522 aa		7.1	□□□□□ -1.27
RPT3	YDR394W	FOX2	Q02207	900 aa	Known RBP	7.1	□□□□□ -1.27
RPT3	YDR394W	PKH1	Q03407	766 aa		7.1	□□□□□ -1.27
RPT3	YDR394W	COG8	Q04632	607 aa		7.1	□□□□□ -1.27
RPT3	YDR394W	MRX10	Q05648	414 aa		7.1	□□□□□ -1.27
RPT3	YDR394W	WTM2	Q12206	467 aa		7.1	□□□□□ -1.27
RPT3	YDR394W	YKR075C	P36155	307 aa		7.09	□□□□□ -1.27
RPT3	YDR394W	AAP1	P37898	856 aa	Known RBP	7.09	□□□□□ -1.27
RPT3	YDR394W	ARL1	P38116	183 aa	Known RBP	7.09	□□□□□ -1.27
RPT3	YDR394W	FPR4	Q06205	392 aa	Predicted RBP	7.09	□□□□□ -1.27
RPT3	YDR394W	RIM20	Q12033	661 aa		7.09	□□□□□ -1.27
RPT3	YDR394W	PSH1	Q12161	406 aa		7.09	□□□□□ -1.27
RPT3	YDR394W	SAC3	P46674	1301 aa		7.08	□□□□□ -1.28
RPT3	YDR394W	ENO1	P00924	437 aa	Known RBP	7.08	□□□□□ -1.28
RPT3	YDR394W	RPP2B	P02400	110 aa	Known RBP	7.08	□□□□□ -1.28
RPT3	YDR394W	TRL1	P09880	827 aa	Known RBP	7.08	□□□□□ -1.28
RPT3	YDR394W	TPM1	P17536	199 aa	Known RBP	7.08	□□□□□ -1.28
RPT3	YDR394W	SLN1	P39928	1220 aa	Predicted RBP	7.08	□□□□□ -1.28
RPT3	YDR394W	YRF1-3	P0CX14	1859 aa		7.08	□□□□□ -1.28
RPT3	YDR394W	YRF1-7	P0CX15	1859 aa		7.08	□□□□□ -1.28
RPT3	YDR394W	YRF1-6	P53819	1859 aa		7.08	□□□□□ -1.28
RPT3	YDR394W	BDH2	P39713	417 aa		7.07	□□□□□ -1.28
RPT3	YDR394W	DLD3	P39976	496 aa	Known RBP	7.07	□□□□□ -1.28
RPT3	YDR394W	RPL34B	P40525	121 aa	Known RBP	7.07	□□□□□ -1.28
RPT3	YDR394W	HYR1	P40581	163 aa	Known RBP	7.07	□□□□□ -1.28
RPT3	YDR394W	MRPS35	P53292	345 aa		7.07	□□□□□ -1.28
RPT3	YDR394W	HST1	P53685	503 aa		7.07	□□□□□ -1.28
RPT3	YDR394W	ALO1	P54783	526 aa	Known RBP	7.07	□□□□□ -1.28
RPT3	YDR394W	DAT1	P13483	248 aa	Known RBP	7.06	□□□□□ -1.28
RPT3	YDR394W	RTG2	P32608	588 aa	Known RBP	7.06	□□□□□ -1.28
RPT3	YDR394W	OSH3	P38713	996 aa	Known RBP	7.06	□□□□□ -1.28
RPT3	YDR394W	OSH7	P38755	437 aa		7.06	□□□□□ -1.28
RPT3	YDR394W	SPO22	P40511	975 aa		7.06	□□□□□ -1.28
RPT3	YDR394W	VTC4	P47075	721 aa		7.06	□□□□□ -1.28
RPT3	YDR394W	NPA3	P47122	385 aa		7.06	□□□□□ -1.28
RPT3	YDR394W	HDA3	Q06623	655 aa		7.06	□□□□□ -1.28
RPT3	YDR394W	SSK22	P25390	1331 aa	Predicted RBP	7.05	□□□□□ -1.28
RPT3	YDR394W	BIK1	P11709	440 aa		7.05	□□□□□ -1.28
RPT3	YDR394W	PRP40	P33203	583 aa	Known RBP	7.05	□□□□□ -1.28
RPT3	YDR394W	KTR3	P38130	404 aa	Predicted RBP	7.05	□□□□□ -1.28
RPT3	YDR394W	VPS20	Q04272	221 aa		7.05	□□□□□ -1.28
RPT3	YDR394W	RGA2	Q06407	1009 aa		7.05	□□□□□ -1.28
RPT3	YDR394W	CDC19	P00549	500 aa	Known RBP	7.04	□□□□□ -1.28
RPT3	YDR394W	SLX8	P40072	274 aa		7.04	□□□□□ -1.28
RPT3	YDR394W	ROG3	P43602	733 aa		7.04	□□□□□ -1.28
RPT3	YDR394W	FCP1	Q03254	732 aa		7.04	□□□□□ -1.28
RPT3	YDR394W	RMD1	Q03441	430 aa		7.04	□□□□□ -1.28
RPT3	YDR394W	SNU66	Q12420	587 aa	Predicted RBP	7.04	□□□□□ -1.28
RPT3	YDR394W	AIM44	Q99299	758 aa		7.04	□□□□□ -1.28
RPT3	YDR394W	SER1	P33330	395 aa	Known RBP	7.03	□□□□□ -1.28
RPT3	YDR394W	TBS1	P38114	1094 aa		7.03	□□□□□ -1.28
RPT3	YDR394W	STM1	P39015	273 aa	Known RBP	7.03	□□□□□ -1.28
RPT3	YDR394W	AIM9	P40053	627 aa	Known RBP	7.03	□□□□□ -1.28
RPT3	YDR394W	YGL082W	P53155	381 aa		7.03	□□□□□ -1.28
RPT3	YDR394W	HRQ1	Q05549	1077 aa		7.03	□□□□□ -1.28
RPT3	YDR394W	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	7.03	□□□□□ -1.28	not detected
RPT3	YDR394W	RPL19A	P0CX82	189 aa	Known RBP	7.02	□□□□□ -1.29
RPT3	YDR394W	RPL19B	P0CX83	189 aa	Predicted RBP	7.02	□□□□□ -1.29
RPT3	YDR394W	OPI1	P21957	404 aa		7.02	□□□□□ -1.29
RPT3	YDR394W	KNS1	P32350	737 aa	Predicted RBP	7.02	□□□□□ -1.29
RPT3	YDR394W	SSN3	P39073	555 aa		7.02	□□□□□ -1.29
RPT3	YDR394W	KRI1	P42846	591 aa	Known RBP	7.02	□□□□□ -1.29
RPT3	YDR394W	YJL181W	P46987	611 aa		7.02	□□□□□ -1.29
RPT3	YDR394W	PIL1	P53252	339 aa	Known RBP	7.02	□□□□□ -1.29
RPT3	YDR394W	TY1A-MR1	Q04215	440 aa		7.02	□□□□□ -1.29
RPT3	YDR394W	NYV1	Q12255	253 aa		7.02	□□□□□ -1.29
RPT3	YDR394W	HAT1	Q12341	374 aa		7.02	□□□□□ -1.29
RPT3	YDR394W	CCP1	P00431	361 aa		7.01	□□□□□ -1.29
RPT3	YDR394W	SEC18	P18759	758 aa	Known RBP	7.01	□□□□□ -1.29
RPT3	YDR394W	DAL1	P32375	460 aa		7.01	□□□□□ -1.29

Retrieved 100 of 5,963 RNA–protein pairs in 72.8 ms