RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 CCDC74BQ96LY2 380 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 TMUB1Q9BVT8 246 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 TRIM8Q9BZR9 551 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 MLXIPLQ9NP71 852 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 PDRG1Q9NUG6 133 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 LRIT1Q9P2V4 623 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 RPS6KL1Q9Y6S9 549 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 STAB1Q9NY15 2570 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 NBEAL1Q6ZS30 2694 aa8.21□□□□□ -1.1
USP54-211ENST00000474929 CSPG4Q6UVK1 2322 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 IGHV5-10-1A0A0J9YXX1 117 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 SPINT1O43278 529 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 ACSL4O60488 711 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 STK17BO94768 372 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 GCNT3O95395 438 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 CTDNEP1O95476 244 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 PAK4O96013 591 aaPredicted RBP8.2□□□□□ -1.1
USP54-211ENST00000474929 CST3P01034 146 aaPredicted RBP8.2□□□□□ -1.1
USP54-211ENST00000474929 DLATP10515 647 aaKnown RBP8.2□□□□□ -1.1
USP54-211ENST00000474929 STK19P49842 368 aaPredicted RBP8.2□□□□□ -1.1
USP54-211ENST00000474929 PEX5P50542 639 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 AP3M2P53677 418 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 PPP2R2AP63151 447 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 PRR30Q53SZ7 412 aaPredicted RBP8.2□□□□□ -1.1
USP54-211ENST00000474929 FAM133BQ5BKY9 247 aaKnown RBP8.2□□□□□ -1.1
USP54-211ENST00000474929 ATP1A1-AS1Q5TC04 95 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 TTC39BQ5VTQ0 682 aaPredicted RBP8.2□□□□□ -1.1
USP54-211ENST00000474929 SLC6A19Q695T7 634 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 RFWD3Q6PCD5 774 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 SCARA5Q6ZMJ2 495 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 SFR1Q86XK3 245 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 RASSF8Q8NHQ8 419 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 RTP4Q96DX8 246 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 CYFIP2Q96F07 1278 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 C14orf79Q96F83 325 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 FAM84AQ96KN4 292 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 PRICKLE1Q96MT3 831 aaPredicted RBP8.2□□□□□ -1.1
USP54-211ENST00000474929 CBWD1Q9BRT8 395 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 STRA6Q9BX79 667 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 DUSP16Q9BY84 665 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 UBXN6Q9BZV1 441 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 XYLT2Q9H1B5 865 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 ACSS2Q9NR19 701 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 OLFML3Q9NRN5 406 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 AGPAT4Q9NRZ5 378 aa8.2□□□□□ -1.1
USP54-211ENST00000474929 RCOR3Q9P2K3 495 aaPredicted RBP8.2□□□□□ -1.1
USP54-211ENST00000474929 FN1P02751 2386 aaKnown RBP8.2□□□□□ -1.1
USP54-211ENST00000474929 ARHGEF17Q96PE2 2063 aaPredicted RBP8.2□□□□□ -1.1
USP54-211ENST00000474929 CDC14CA4D256 554 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 LRRTM2O43300 516 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 TSPAN6O43657 245 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 ZG16O60844 167 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 ZBED1O96006 694 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 IGLV3-27P01718 113 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 THRAP10827 490 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 VAV1P15498 845 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 NFKBIAP25963 317 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 DLSTP36957 453 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 GPR3P46089 330 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 PLK1P53350 603 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 MYL6P60660 151 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 BIRC2Q13490 618 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 PEX6Q13608 980 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 ERV3-1Q14264 604 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 HLTFQ14527 1009 aaKnown RBP eCLIP8.19□□□□□ -1.1
USP54-211ENST00000474929 PSMD6Q15008 389 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 ANKS6Q68DC2 871 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 OGFOD3Q6PK18 319 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 BNC2Q6ZN30 1099 aaPredicted RBP8.19□□□□□ -1.1
USP54-211ENST00000474929 Q6ZVU0 165 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 CXXC5Q7LFL8 322 aaKnown RBP8.19□□□□□ -1.1
USP54-211ENST00000474929 UNC5BQ8IZJ1 945 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 Q8NA96 180 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 RCBTB1Q8NDN9 531 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 CHTF18Q8WVB6 975 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 LARP4BQ92615 738 aaKnown RBP8.19□□□□□ -1.1
USP54-211ENST00000474929 TAF4BQ92750 862 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 RAB7BQ96AH8 199 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 KLF6Q99612 283 aaPredicted RBP8.19□□□□□ -1.1
USP54-211ENST00000474929 C1QTNF2Q9BXJ5 285 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 SPRY4Q9C004 299 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 TWSG1Q9GZX9 223 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 ZMYND15Q9H091 742 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 TCEAL2Q9H3H9 227 aaPredicted RBP8.19□□□□□ -1.1
USP54-211ENST00000474929 PCIF1Q9H4Z3 704 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 RDH14Q9HBH5 336 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 ABCC13Q9NSE7 274 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 DAAM1Q9Y4D1 1078 aa8.19□□□□□ -1.1
USP54-211ENST00000474929 RHPN2P1A8MT19 583 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 RAD51BO15315 384 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 DLGAP3O95886 979 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 ADRB3P13945 408 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 FOSL1P15407 271 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 CASP14P31944 242 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 CHRNA3P32297 505 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 UBA7P41226 1012 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 IRX6P78412 446 aaPredicted RBP8.18□□□□□ -1.1
USP54-211ENST00000474929 NUCB2P80303 420 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 CDK18Q07002 472 aa8.18□□□□□ -1.1
USP54-211ENST00000474929 BIRC3Q13489 604 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms