RNA–Protein interactions for RNA: ENST00000359759.8

COL18A1-203, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL18A1, Length 6,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-203ENST00000359759 TLR8Q9NR97 1041 aaKnown RBP16.29■□□□□ 0.2
COL18A1-203ENST00000359759 RRN3Q9NYV6 651 aa16.29■□□□□ 0.2
COL18A1-203ENST00000359759 TAS2R13Q9NYV9 303 aa16.29■□□□□ 0.2
COL18A1-203ENST00000359759 FAM50BQ9Y247 325 aa16.29■□□□□ 0.2
COL18A1-203ENST00000359759 FAM237BA0A1B0GVD1 139 aa16.29■□□□□ 0.2
COL18A1-203ENST00000359759 LRRC14BA6NHZ5 514 aa16.29■□□□□ 0.2
COL18A1-203ENST00000359759 PALM2-AKAP2B1ALY0 433 aaPredicted RBP16.29■□□□□ 0.2
COL18A1-203ENST00000359759 SEMA3DO95025 777 aa16.29■□□□□ 0.2
COL18A1-203ENST00000359759 THP07101 528 aa16.29■□□□□ 0.2
COL18A1-203ENST00000359759 RXRGP48443 463 aa16.29■□□□□ 0.2
COL18A1-203ENST00000359759 EPHB3P54753 998 aa16.29■□□□□ 0.2
COL18A1-203ENST00000359759 UBAP2LQ14157 1087 aaKnown RBP16.29■□□□□ 0.2
COL18A1-203ENST00000359759 SAMD4BQ5PRF9 694 aaKnown RBP16.29■□□□□ 0.2
COL18A1-203ENST00000359759 ARMC8Q8IUR7 673 aa16.29■□□□□ 0.2
COL18A1-203ENST00000359759 SCUBE3Q8IX30 993 aa16.29■□□□□ 0.2
COL18A1-203ENST00000359759 MYOZ2Q9NPC6 264 aa16.29■□□□□ 0.2
COL18A1-203ENST00000359759 PTGFRNQ9P2B2 879 aa16.29■□□□□ 0.2
COL18A1-203ENST00000359759 FBXO10Q9UK96 956 aa16.29■□□□□ 0.2
COL18A1-203ENST00000359759 TSPAN16Q9UKR8 245 aa16.29■□□□□ 0.2
COL18A1-203ENST00000359759 STARD13Q9Y3M8 1113 aa16.29■□□□□ 0.2
COL18A1-203ENST00000359759 AP3D1O14617 1153 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 PIGNO95427 931 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 LCA5LO95447 670 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 TSPAN8P19075 237 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 GPSM1Q86YR5 675 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 CROCCP3Q8IVE0 287 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 MTMR8Q96EF0 704 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 QKIQ96PU8 341 aaKnown RBP eCLIP16.28■□□□□ 0.2
COL18A1-203ENST00000359759 PHF11Q9UIL8 331 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 NUDT5Q9UKK9 219 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 IKZF3Q9UKT9 509 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 PCDHA3Q9Y5H8 950 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 FBXO21O94952 628 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 OR56A5P0C7T3 313 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 SUPT20HL2P0C7V6 817 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 RARAP10276 462 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 HPS6Q86YV9 775 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 ZNF540Q8NDQ6 660 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 KIAA1683Q9H0B3 1180 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 AAASQ9NRG9 546 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 SMPD4Q9NXE4 827 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 UBA2Q9UBT2 640 aaPredicted RBP16.28■□□□□ 0.2
COL18A1-203ENST00000359759 USP20Q9Y2K6 914 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 DISP1Q96F81 1524 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 A0A087WZ62 844 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 TSPAN9O75954 239 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 NDST1P52848 882 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 AP5B1Q2VPB7 878 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 INO80DQ53TQ3 878 aaPredicted RBP16.28■□□□□ 0.2
COL18A1-203ENST00000359759 GPR107Q5VW38 600 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 CHPFQ8IZ52 775 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 CLIP3Q96DZ5 547 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 NLNQ9BYT8 704 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 ZNF518BQ9C0D4 1074 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 ALG9Q9H6U8 611 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 SHROOM2Q13796 1616 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 ETS2P15036 469 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 USP46P62068 366 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 ITGB3BPQ13352 177 aaPredicted RBP16.28■□□□□ 0.2
COL18A1-203ENST00000359759 FRG1Q14331 258 aaKnown RBP16.28■□□□□ 0.2
COL18A1-203ENST00000359759 RBM44Q6ZP01 1051 aaKnown RBP16.28■□□□□ 0.2
COL18A1-203ENST00000359759 SAMD7Q7Z3H4 446 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 TSPAN14Q8NG11 270 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 KLQ9UEF7 1012 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 DSEQ9UL01 958 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 A0A087X1B8 175 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 NELFEP18615 380 aaKnown RBP16.28■□□□□ 0.2
COL18A1-203ENST00000359759 MCL1Q07820 350 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 MTAPQ13126 283 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 PDK3Q15120 406 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 NPNTQ6UXI9 565 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 VPS35Q96QK1 796 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 C17orf75Q9HAS0 396 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 CLN6Q9NWW5 311 aa16.28■□□□□ 0.2
COL18A1-203ENST00000359759 USP42Q9H9J4 1324 aaKnown RBP16.28■□□□□ 0.2
COL18A1-203ENST00000359759 AK9Q5TCS8 1911 aa16.27■□□□□ 0.2
COL18A1-203ENST00000359759 KCNK1O00180 336 aa16.27■□□□□ 0.2
COL18A1-203ENST00000359759 PFKFB4Q16877 469 aa16.27■□□□□ 0.2
COL18A1-203ENST00000359759 FAM220AQ7Z4H9 259 aa16.27■□□□□ 0.2
COL18A1-203ENST00000359759 RNF180Q86T96 592 aa16.27■□□□□ 0.2
COL18A1-203ENST00000359759 ADHFE1Q8IWW8 467 aa16.27■□□□□ 0.2
COL18A1-203ENST00000359759 DNAJB14Q8TBM8 379 aa16.27■□□□□ 0.2
COL18A1-203ENST00000359759 ANKRD27Q96NW4 1050 aa16.27■□□□□ 0.2
COL18A1-203ENST00000359759 KIAA1257Q9ULG3 409 aa16.27■□□□□ 0.2
COL18A1-203ENST00000359759 GMPPBQ9Y5P6 360 aa16.27■□□□□ 0.2
COL18A1-203ENST00000359759 H3BMM5 538 aa16.27■□□□□ 0.2
COL18A1-203ENST00000359759 ECDO95905 644 aaPredicted RBP16.27■□□□□ 0.2
COL18A1-203ENST00000359759 ICAM1P05362 532 aa16.27■□□□□ 0.2
COL18A1-203ENST00000359759 TBX4P57082 545 aa16.27■□□□□ 0.2
COL18A1-203ENST00000359759 KCTD19Q17RG1 926 aaPredicted RBP16.27■□□□□ 0.2
COL18A1-203ENST00000359759 SMYD1Q8NB12 490 aa16.27■□□□□ 0.2
COL18A1-203ENST00000359759 ENOPH1Q9UHY7 261 aa16.27■□□□□ 0.2
COL18A1-203ENST00000359759 PRKAB1Q9Y478 270 aa16.27■□□□□ 0.2
COL18A1-203ENST00000359759 OPLAHO14841 1288 aa16.27■□□□□ 0.2
COL18A1-203ENST00000359759 KPNA5O15131 536 aa16.27■□□□□ 0.2
COL18A1-203ENST00000359759 ENTPD3O75355 529 aa16.27■□□□□ 0.2
COL18A1-203ENST00000359759 LHX1P48742 406 aa16.27■□□□□ 0.2
COL18A1-203ENST00000359759 RAPSNQ13702 412 aa16.27■□□□□ 0.2
COL18A1-203ENST00000359759 GPAT3Q53EU6 434 aa16.27■□□□□ 0.2
COL18A1-203ENST00000359759 RPTNQ6XPR3 784 aa16.27■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms