RNA–Protein interactions for RNA: YNR006W

VPS27, Transcript of Endosomal protein that forms a complex with Hse1p, yeast

Gene VPS27, Length 1,869 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS27	YNR006W	YJR098C	P47139	656 aa		4.98	□□□□□ -1.61
VPS27	YNR006W	YNL011C	P53980	444 aa		4.98	□□□□□ -1.61
VPS27	YNR006W	GIN4	Q12263	1142 aa		4.98	□□□□□ -1.61
VPS27	YNR006W	MET6	P05694	767 aa	Known RBP	4.97	□□□□□ -1.61
VPS27	YNR006W	GCD6	P32501	712 aa	Known RBP	4.97	□□□□□ -1.61
VPS27	YNR006W	SMC1	P32908	1225 aa		4.97	□□□□□ -1.61
VPS27	YNR006W	PET112	P33893	541 aa		4.97	□□□□□ -1.61
VPS27	YNR006W	AHP1	P38013	176 aa	Known RBP	4.97	□□□□□ -1.61
VPS27	YNR006W	ENP1	P38333	483 aa	Known RBP	4.97	□□□□□ -1.61
VPS27	YNR006W	DYS1	P38791	387 aa		4.97	□□□□□ -1.61
VPS27	YNR006W	MSN1	P22148	382 aa		4.96	□□□□□ -1.61
VPS27	YNR006W	VPS35	P34110	944 aa		4.96	□□□□□ -1.61
VPS27	YNR006W	RGD2	P43556	714 aa		4.96	□□□□□ -1.61
VPS27	YNR006W	CDC55	Q00362	526 aa		4.96	□□□□□ -1.61
VPS27	YNR006W	PSH1	Q12161	406 aa		4.96	□□□□□ -1.61
VPS27	YNR006W	RPC31	P17890	251 aa		4.96	□□□□□ -1.62
VPS27	YNR006W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.96	□□□□□ -1.62	not detected
VPS27	YNR006W	PDC6	P26263	563 aa	Known RBP	4.96	□□□□□ -1.62
VPS27	YNR006W	KAP122	P32767	1081 aa		4.96	□□□□□ -1.62
VPS27	YNR006W	TIM23	P32897	222 aa		4.96	□□□□□ -1.62
VPS27	YNR006W	CWC24	P53769	259 aa		4.96	□□□□□ -1.62
VPS27	YNR006W	RSC4	Q02206	625 aa		4.96	□□□□□ -1.62
VPS27	YNR006W	HXK1	P04806	485 aa	Known RBP	4.95	□□□□□ -1.62
VPS27	YNR006W	RAD2	P07276	1031 aa		4.95	□□□□□ -1.62
VPS27	YNR006W	NAB2	P32505	525 aa	Known RBP RIP-Chip data	4.95	□□□□□ -1.62	RIP-Chip
VPS27	YNR006W	NAB3	P38996	802 aa	Known RBP RIP-Chip data	4.95	□□□□□ -1.62	not detected
VPS27	YNR006W	YTA6	P40328	754 aa		4.95	□□□□□ -1.62
VPS27	YNR006W	ZDS1	P50111	915 aa	Known RBP	4.95	□□□□□ -1.62
VPS27	YNR006W	LSC2	P53312	427 aa		4.95	□□□□□ -1.62
VPS27	YNR006W	LEU1	P07264	779 aa	Known RBP	4.94	□□□□□ -1.62
VPS27	YNR006W	RAD55	P38953	406 aa		4.94	□□□□□ -1.62
VPS27	YNR006W	FAA3	P39002	694 aa		4.94	□□□□□ -1.62
VPS27	YNR006W	RGA1	P39083	1007 aa		4.94	□□□□□ -1.62
VPS27	YNR006W	YEN1	P40028	759 aa		4.94	□□□□□ -1.62
VPS27	YNR006W	NTA1	P40354	457 aa		4.94	□□□□□ -1.62
VPS27	YNR006W	FAA4	P47912	694 aa	Known RBP	4.94	□□□□□ -1.62
VPS27	YNR006W	RAD4	P14736	754 aa		4.94	□□□□□ -1.62
VPS27	YNR006W	BSD2	P38356	321 aa		4.94	□□□□□ -1.62
VPS27	YNR006W	YHR020W	P38708	688 aa	Known RBP	4.94	□□□□□ -1.62
VPS27	YNR006W	NOP2	P40991	618 aa	Known RBP	4.94	□□□□□ -1.62
VPS27	YNR006W	UTP14	Q04500	899 aa	Known RBP	4.94	□□□□□ -1.62
VPS27	YNR006W	TCB1	Q12466	1186 aa		4.94	□□□□□ -1.62
VPS27	YNR006W	TIF6	Q12522	245 aa	Known RBP	4.94	□□□□□ -1.62
VPS27	YNR006W	FIR1	P40020	876 aa		4.93	□□□□□ -1.62
VPS27	YNR006W	MSH4	P40965	878 aa	Predicted RBP	4.93	□□□□□ -1.62
VPS27	YNR006W	YOR296W	Q08748	1289 aa		4.93	□□□□□ -1.62
VPS27	YNR006W	PHO8	P11491	566 aa		4.92	□□□□□ -1.62
VPS27	YNR006W	DUT1	P33317	147 aa		4.92	□□□□□ -1.62
VPS27	YNR006W	IRS4	P36115	615 aa	Known RBP	4.92	□□□□□ -1.62
VPS27	YNR006W	ISW1	P38144	1129 aa		4.92	□□□□□ -1.62
VPS27	YNR006W	GIP1	P38229	639 aa		4.92	□□□□□ -1.62
VPS27	YNR006W	SPF1	P39986	1215 aa	Known RBP	4.92	□□□□□ -1.62
VPS27	YNR006W	PSY2	P40164	858 aa		4.92	□□□□□ -1.62
VPS27	YNR006W	SAM37	P50110	327 aa		4.92	□□□□□ -1.62
VPS27	YNR006W	GDE1	Q02979	1223 aa		4.92	□□□□□ -1.62
VPS27	YNR006W	BSC2	Q05611	235 aa		4.92	□□□□□ -1.62
VPS27	YNR006W	PRI2	P20457	528 aa		4.92	□□□□□ -1.62
VPS27	YNR006W	YKL069W	P36088	180 aa		4.92	□□□□□ -1.62
VPS27	YNR006W	CDC34	P14682	295 aa		4.91	□□□□□ -1.62
VPS27	YNR006W	TIM54	P47045	478 aa		4.91	□□□□□ -1.62
VPS27	YNR006W	UBP15	P50101	1230 aa		4.91	□□□□□ -1.62
VPS27	YNR006W	SKP1	P52286	194 aa		4.91	□□□□□ -1.62
VPS27	YNR006W	DNM1	P54861	757 aa		4.91	□□□□□ -1.62
VPS27	YNR006W	CUS1	Q02554	436 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS27	YNR006W	NAN1	Q02931	896 aa	Known RBP	4.91	□□□□□ -1.62
VPS27	YNR006W	TDA5	Q06417	326 aa	Known RBP	4.91	□□□□□ -1.62
VPS27	YNR006W	NOC3	Q07896	663 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS27	YNR006W	OXR1	Q08952	273 aa		4.91	□□□□□ -1.62
VPS27	YNR006W	CDC19	P00549	500 aa	Known RBP	4.9	□□□□□ -1.62
VPS27	YNR006W	RGP1	P16664	663 aa		4.9	□□□□□ -1.62
VPS27	YNR006W	SEC6	P32844	805 aa		4.9	□□□□□ -1.62
VPS27	YNR006W	YGR053C	P53234	283 aa		4.9	□□□□□ -1.62
VPS27	YNR006W	OPI10	Q08202	246 aa		4.9	□□□□□ -1.62
VPS27	YNR006W	SRM1	P21827	482 aa		4.9	□□□□□ -1.63
VPS27	YNR006W	GRX7	P38068	203 aa		4.9	□□□□□ -1.63
VPS27	YNR006W	CRP1	P38845	465 aa	Known RBP	4.9	□□□□□ -1.63
VPS27	YNR006W	TYW3	P53177	273 aa		4.9	□□□□□ -1.63
VPS27	YNR006W	MDG1	P53885	366 aa		4.9	□□□□□ -1.63
VPS27	YNR006W	OPT2	Q06593	877 aa		4.9	□□□□□ -1.63
VPS27	YNR006W	YLR125W	Q12138	136 aa		4.9	□□□□□ -1.63
VPS27	YNR006W	ERR1	P0CX10	437 aa		4.89	□□□□□ -1.63
VPS27	YNR006W	ERR2	P0CX11	437 aa		4.89	□□□□□ -1.63
VPS27	YNR006W	PRE9	P23638	258 aa	Known RBP	4.89	□□□□□ -1.63
VPS27	YNR006W	YHL008C	P38750	627 aa		4.89	□□□□□ -1.63
VPS27	YNR006W	CIC1	P38779	376 aa	Known RBP	4.89	□□□□□ -1.63
VPS27	YNR006W	CHZ1	P40019	153 aa	Predicted RBP	4.89	□□□□□ -1.63
VPS27	YNR006W	BRE2	P43132	505 aa		4.89	□□□□□ -1.63
VPS27	YNR006W	ITC1	P53125	1264 aa		4.89	□□□□□ -1.63
VPS27	YNR006W	CTR9	P89105	1077 aa		4.89	□□□□□ -1.63
VPS27	YNR006W	UBP2	Q01476	1272 aa		4.89	□□□□□ -1.63
VPS27	YNR006W	EMG1	Q06287	252 aa	Known RBP	4.89	□□□□□ -1.63
VPS27	YNR006W	YDL121C	Q07541	149 aa		4.89	□□□□□ -1.63
VPS27	YNR006W	PAF1	P38351	445 aa		4.88	□□□□□ -1.63
VPS27	YNR006W	RSP5	P39940	809 aa	Known RBP	4.88	□□□□□ -1.63
VPS27	YNR006W	YNR040W	P53736	256 aa		4.88	□□□□□ -1.63
VPS27	YNR006W	FOL1	P53848	824 aa		4.88	□□□□□ -1.63
VPS27	YNR006W	INP54	Q08227	384 aa	Known RBP	4.88	□□□□□ -1.63
VPS27	YNR006W	FLC1	Q08967	793 aa		4.88	□□□□□ -1.63
VPS27	YNR006W	NOP14	Q99207	810 aa	Known RBP	4.88	□□□□□ -1.63
VPS27	YNR006W	THI4	P32318	326 aa		4.88	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 11.3 ms