RNA–Protein interactions for RNA: YBR170C

NPL4, Transcript of Substrate-recruiting cofactor of the Cdc48p-Npl4p-Ufd1p segregase, yeastyeast

Gene NPL4, Length 1,743 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NPL4YBR170C PDC6P26263 563 aaKnown RBP5.99□□□□□ -1.45
NPL4YBR170C SHM1P37292 490 aaPredicted RBP5.99□□□□□ -1.45
NPL4YBR170C IOC3P43596 787 aa5.99□□□□□ -1.45
NPL4YBR170C PSH1Q12161 406 aa5.99□□□□□ -1.45
NPL4YBR170C RPP1AP05318 106 aaPredicted RBP5.98□□□□□ -1.45
NPL4YBR170C SRP40P32583 406 aaPredicted RBP5.98□□□□□ -1.45
NPL4YBR170C VPS35P34110 944 aa5.98□□□□□ -1.45
NPL4YBR170C RPS26AP39938 119 aaKnown RBP5.98□□□□□ -1.45
NPL4YBR170C RPS26BP39939 119 aaKnown RBP5.98□□□□□ -1.45
NPL4YBR170C CLN2P20438 545 aa5.97□□□□□ -1.45
NPL4YBR170C HXT5P38695 592 aa5.97□□□□□ -1.45
NPL4YBR170C SUT1P53032 299 aaKnown RBP5.97□□□□□ -1.45
NPL4YBR170C YNL011CP53980 444 aa5.97□□□□□ -1.45
NPL4YBR170C CDC55Q00362 526 aa5.97□□□□□ -1.45
NPL4YBR170C SSF2Q12153 453 aaPredicted RBP5.97□□□□□ -1.45
NPL4YBR170C PEP7P32609 515 aa5.96□□□□□ -1.45
NPL4YBR170C TY1A-DR2Q03964 440 aaKnown RBP5.96□□□□□ -1.45
NPL4YBR170C ESF1Q06344 628 aaKnown RBP5.96□□□□□ -1.45
NPL4YBR170C MRPL33P20084 86 aa5.96□□□□□ -1.46
NPL4YBR170C SAM37P50110 327 aa5.96□□□□□ -1.46
NPL4YBR170C YGR122WP53272 402 aa5.96□□□□□ -1.46
NPL4YBR170C CYC8P14922 966 aa5.95□□□□□ -1.46
NPL4YBR170C YKL091CP33324 310 aaKnown RBP5.95□□□□□ -1.46
NPL4YBR170C CIT2P08679 460 aa5.94□□□□□ -1.46
NPL4YBR170C PPG1P32838 368 aa5.94□□□□□ -1.46
NPL4YBR170C PRY1P47032 299 aa5.94□□□□□ -1.46
NPL4YBR170C YJL049WP47048 450 aa5.94□□□□□ -1.46
NPL4YBR170C YPQ2Q06328 317 aa5.94□□□□□ -1.46
NPL4YBR170C WRS1Q12109 432 aaKnown RBP5.94□□□□□ -1.46
NPL4YBR170C MNR2P35724 969 aa5.94□□□□□ -1.46
NPL4YBR170C YPL034WQ03083 165 aa5.94□□□□□ -1.46
NPL4YBR170C NSE3Q05541 303 aa5.94□□□□□ -1.46
NPL4YBR170C TOS4Q06266 489 aa5.94□□□□□ -1.46
NPL4YBR170C OXR1Q08952 273 aa5.94□□□□□ -1.46
NPL4YBR170C MCM1P11746 286 aa5.93□□□□□ -1.46
NPL4YBR170C PET112P33893 541 aa5.93□□□□□ -1.46
NPL4YBR170C SMC1P32908 1225 aa5.92□□□□□ -1.46
NPL4YBR170C SCD5P34758 872 aa5.92□□□□□ -1.46
NPL4YBR170C CIC1P38779 376 aaKnown RBP5.92□□□□□ -1.46
NPL4YBR170C OSW7P43611 510 aa5.92□□□□□ -1.46
NPL4YBR170C RSC4Q02206 625 aa5.92□□□□□ -1.46
NPL4YBR170C RPN4Q03465 531 aa5.92□□□□□ -1.46
NPL4YBR170C NOC3Q07896 663 aaPredicted RBP5.92□□□□□ -1.46
NPL4YBR170C RAD2P07276 1031 aa5.91□□□□□ -1.46
NPL4YBR170C HXT8P40886 569 aa5.91□□□□□ -1.46
NPL4YBR170C HXK1P04806 485 aaKnown RBP5.91□□□□□ -1.46
NPL4YBR170C STI1P15705 589 aaKnown RBP RIP-Chip data5.91□□□□□ -1.46not detected
NPL4YBR170C VMA3P25515 160 aa5.91□□□□□ -1.46
NPL4YBR170C MTO1P53070 669 aa5.91□□□□□ -1.46
NPL4YBR170C ALG12P53730 551 aa5.91□□□□□ -1.46
NPL4YBR170C BSC2Q05611 235 aa5.91□□□□□ -1.46
NPL4YBR170C LEU1P07264 779 aaKnown RBP5.9□□□□□ -1.47
NPL4YBR170C FAA3P39002 694 aa5.9□□□□□ -1.47
NPL4YBR170C BUD6P41697 788 aa5.9□□□□□ -1.47
NPL4YBR170C RPS31P05759 152 aaKnown RBP5.89□□□□□ -1.47
NPL4YBR170C RRP14P36080 434 aaKnown RBP5.89□□□□□ -1.47
NPL4YBR170C FPR3P38911 411 aaKnown RBP5.89□□□□□ -1.47
NPL4YBR170C YTA6P40328 754 aa5.89□□□□□ -1.47
NPL4YBR170C IRC24P40580 263 aa5.89□□□□□ -1.47
NPL4YBR170C CWC24P53769 259 aa5.89□□□□□ -1.47
NPL4YBR170C ALO1P54783 526 aaKnown RBP5.89□□□□□ -1.47
NPL4YBR170C OMA1P36163 345 aa5.88□□□□□ -1.47
NPL4YBR170C CDC53Q12018 815 aaKnown RBP5.88□□□□□ -1.47
NPL4YBR170C PBP2P38151 413 aaKnown RBP RIP-Chip data5.88□□□□□ -1.47not detected
NPL4YBR170C BDF2Q07442 638 aa5.88□□□□□ -1.47
NPL4YBR170C NHA1Q99271 985 aa5.88□□□□□ -1.47
NPL4YBR170C LDH1P38139 375 aa5.87□□□□□ -1.47
NPL4YBR170C MSC7P38694 644 aa5.87□□□□□ -1.47
NPL4YBR170C RAD55P38953 406 aa5.87□□□□□ -1.47
NPL4YBR170C TAT2P38967 592 aa5.87□□□□□ -1.47
NPL4YBR170C UTP4Q06679 776 aaKnown RBP5.87□□□□□ -1.47
NPL4YBR170C NTA1P40354 457 aa5.86□□□□□ -1.47
NPL4YBR170C UBP3Q01477 912 aaKnown RBP RIP-Chip data5.86□□□□□ -1.47not detected
NPL4YBR170C DAL4Q04895 635 aa5.86□□□□□ -1.47
NPL4YBR170C INP54Q08227 384 aaKnown RBP5.86□□□□□ -1.47
NPL4YBR170C RGP1P16664 663 aa5.85□□□□□ -1.47
NPL4YBR170C PRE9P23638 258 aaKnown RBP5.85□□□□□ -1.47
NPL4YBR170C GRX1P25373 110 aaKnown RBP5.85□□□□□ -1.47
NPL4YBR170C MRPS18P42847 217 aa5.85□□□□□ -1.47
NPL4YBR170C RGD2P43556 714 aa5.85□□□□□ -1.47
NPL4YBR170C YOR131CQ12486 218 aa5.85□□□□□ -1.47
NPL4YBR170C DYS1P38791 387 aa5.85□□□□□ -1.47
NPL4YBR170C YNL165WP53891 406 aa5.85□□□□□ -1.47
NPL4YBR170C GDE1Q02979 1223 aa5.85□□□□□ -1.47
NPL4YBR170C MCD1Q12158 566 aa5.85□□□□□ -1.47
NPL4YBR170C Q0182Q9ZZW1 134 aa5.85□□□□□ -1.47
NPL4YBR170C TOP1P04786 769 aa5.84□□□□□ -1.47
NPL4YBR170C CDC34P14682 295 aa5.84□□□□□ -1.47
NPL4YBR170C MSN1P22148 382 aa5.84□□□□□ -1.47
NPL4YBR170C IRS4P36115 615 aaKnown RBP5.84□□□□□ -1.47
NPL4YBR170C ALG14P38242 237 aa5.84□□□□□ -1.47
NPL4YBR170C YHL008CP38750 627 aa5.84□□□□□ -1.47
NPL4YBR170C FIR1P40020 876 aa5.84□□□□□ -1.47
NPL4YBR170C FAA4P47912 694 aaKnown RBP5.84□□□□□ -1.47
NPL4YBR170C YCS4Q06156 1176 aa5.84□□□□□ -1.47
NPL4YBR170C TIF6Q12522 245 aaKnown RBP5.84□□□□□ -1.47
NPL4YBR170C PRP40P33203 583 aaKnown RBP5.83□□□□□ -1.48
NPL4YBR170C PSY2P40164 858 aa5.83□□□□□ -1.48
NPL4YBR170C QDR2P40474 542 aa5.83□□□□□ -1.48
NPL4YBR170C ATG36P46983 293 aa5.83□□□□□ -1.48
Retrieved 100 of 5,963 RNA–protein pairs in 17.4 ms