RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 CELF3Q5SZQ8 465 aaKnown RBP10.47□□□□□ -0.73
CHD3-201ENST00000330494 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.47□□□□□ -0.73
CHD3-201ENST00000330494 ZC3H15Q8WU90 426 aaKnown RBP10.47□□□□□ -0.73
CHD3-201ENST00000330494 HMX1Q9NP08 348 aaPredicted RBP10.47□□□□□ -0.73
CHD3-201ENST00000330494 DMGDHQ9UI17 866 aaKnown RBP10.47□□□□□ -0.73
CHD3-201ENST00000330494 DTNAQ9Y4J8 743 aa10.47□□□□□ -0.73
CHD3-201ENST00000330494 PCDHB5Q9Y5E4 795 aa10.47□□□□□ -0.73
CHD3-201ENST00000330494 LTN1O94822 1766 aa10.47□□□□□ -0.73
CHD3-201ENST00000330494 SH3BGRLO75368 114 aa10.47□□□□□ -0.73
CHD3-201ENST00000330494 ZSCAN5DPP0CG00 497 aa10.47□□□□□ -0.73
CHD3-201ENST00000330494 CCR1P32246 355 aa10.47□□□□□ -0.73
CHD3-201ENST00000330494 HERC6Q8IVU3 1022 aa10.47□□□□□ -0.73
CHD3-201ENST00000330494 LGI2Q8N0V4 545 aa10.47□□□□□ -0.73
CHD3-201ENST00000330494 DEFB106AQ8N104 65 aa10.47□□□□□ -0.73
CHD3-201ENST00000330494 HDAC7Q8WUI4 952 aa10.47□□□□□ -0.73
CHD3-201ENST00000330494 CMTM5Q96DZ9 223 aa10.47□□□□□ -0.73
CHD3-201ENST00000330494 IKZF4Q9H2S9 585 aa10.47□□□□□ -0.73
CHD3-201ENST00000330494 VTA1Q9NP79 307 aa10.47□□□□□ -0.73
CHD3-201ENST00000330494 CYP39A1Q9NYL5 469 aa10.47□□□□□ -0.73
CHD3-201ENST00000330494 WHRNQ9P202 907 aa10.47□□□□□ -0.73
CHD3-201ENST00000330494 CDY2AQ9Y6F7 541 aa10.47□□□□□ -0.73
CHD3-201ENST00000330494 CDY1Q9Y6F8 540 aa10.47□□□□□ -0.73
CHD3-201ENST00000330494 MEIS2O14770 477 aa10.47□□□□□ -0.73
CHD3-201ENST00000330494 NFICP08651 508 aa10.47□□□□□ -0.73
CHD3-201ENST00000330494 UGT3A1Q6NUS8 523 aa10.47□□□□□ -0.73
CHD3-201ENST00000330494 EXD1Q8NHP7 514 aa10.47□□□□□ -0.73
CHD3-201ENST00000330494 CNBD2Q96M20 576 aa10.47□□□□□ -0.73
CHD3-201ENST00000330494 ECSITQ9BQ95 431 aa10.47□□□□□ -0.73
CHD3-201ENST00000330494 KLHL2O95198 593 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 SERPINB8P50452 374 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 SCNN1GP51170 649 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 PSMD7P51665 324 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 GPR152Q8TDT2 470 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 DIS3LQ8TF46 1054 aaKnown RBP10.46□□□□□ -0.73
CHD3-201ENST00000330494 BTN2A2Q8WVV5 523 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 CACNA2D2Q9NY47 1150 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 MYOM1P52179 1685 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 MYPNQ86TC9 1320 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 CAPN15O75808 1086 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 PPP3CAQ08209 521 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 WSCD1Q658N2 575 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 NAIF1Q69YI7 327 aaPredicted RBP10.46□□□□□ -0.73
CHD3-201ENST00000330494 PATL1Q86TB9 770 aaKnown RBP10.46□□□□□ -0.73
CHD3-201ENST00000330494 NFKBIZQ9BYH8 718 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 CLPBQ9H078 707 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 ILKAPQ9H0C8 392 aaPredicted RBP10.46□□□□□ -0.73
CHD3-201ENST00000330494 TKTL2Q9H0I9 626 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 CYP3A43Q9HB55 503 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 FRMPD4Q14CM0 1322 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 E9PBE3 544 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 DDX3XO00571 662 aaKnown RBP eCLIP10.46□□□□□ -0.73
CHD3-201ENST00000330494 KLHL41O60662 606 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 UBTFL6P0CB48 400 aaPredicted RBP10.46□□□□□ -0.73
CHD3-201ENST00000330494 SARSP49591 514 aaKnown RBP10.46□□□□□ -0.73
CHD3-201ENST00000330494 USP50Q70EL3 339 aaPredicted RBP10.46□□□□□ -0.73
CHD3-201ENST00000330494 ILDR2Q71H61 639 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 PHACTR4Q8IZ21 702 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 HAS1Q92839 578 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 OTUB1Q96FW1 271 aaPredicted RBP10.46□□□□□ -0.73
CHD3-201ENST00000330494 SMARCD1Q96GM5 515 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 NSL1Q96IY1 281 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 SEMA4AQ9H3S1 761 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 LRRC40Q9H9A6 602 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 DNPEPQ9ULA0 475 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 DNAJC16Q9Y2G8 782 aa10.46□□□□□ -0.73
CHD3-201ENST00000330494 STRNO43815 780 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 VPS26AO75436 327 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 CPSF4O95639 269 aaKnown RBP10.46□□□□□ -0.74
CHD3-201ENST00000330494 STAU1O95793 577 aaKnown RBP10.46□□□□□ -0.74
CHD3-201ENST00000330494 MAPK9P45984 424 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 CRADDP78560 199 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 PLCL1Q15111 1095 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 TRIP10Q15642 601 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 UGCGQ16739 394 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 LLGL2Q6P1M3 1020 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 RIBC1Q8N443 379 aaPredicted RBP10.46□□□□□ -0.74
CHD3-201ENST00000330494 ZNF614Q8N883 585 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 SH3GL2Q99962 352 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 VPS33BQ9H267 617 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 ZNF556Q9HAH1 456 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 TRPV2Q9Y5S1 764 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 RGPD8O14715 1765 aaPredicted RBP10.46□□□□□ -0.74
CHD3-201ENST00000330494 CCT8L1PA6NM43 557 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 HOXA2O43364 376 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 GZMAP12544 262 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 YBX3P16989 372 aaKnown RBP eCLIP10.46□□□□□ -0.742e-8■□□□□ 10.9
CHD3-201ENST00000330494 KCNA3P22001 575 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 SSTR1P30872 391 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 ABCG1P45844 678 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 SDHAF4Q5VUM1 108 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 CD248Q9HCU0 757 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 TDRKHQ9Y2W6 561 aaKnown RBP10.46□□□□□ -0.74
CHD3-201ENST00000330494 NR5A2O00482 541 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 CLDN5O00501 218 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 WNT7AO00755 349 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 SYNCRIPO60506 623 aaKnown RBP10.46□□□□□ -0.74
CHD3-201ENST00000330494 GLP2RO95838 553 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 LTFP02788 710 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 KRT8P05787 483 aa10.46□□□□□ -0.74
CHD3-201ENST00000330494 FAM153BP0C7A2 387 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms