RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 EMILIN2Q9BXX0 1053 aa14□□□□□ -0.17
SF3A1-201ENST00000215793 NDEL1Q9GZM8 345 aa14□□□□□ -0.17
SF3A1-201ENST00000215793 C6orf203Q9P0P8 240 aaPredicted RBP14□□□□□ -0.17
SF3A1-201ENST00000215793 AP4S1Q9Y587 144 aa14□□□□□ -0.17
SF3A1-201ENST00000215793 SPATA31A5Q5VU36 1347 aa14□□□□□ -0.17
SF3A1-201ENST00000215793 SPATA31A7Q8IWB4 1347 aa14□□□□□ -0.17
SF3A1-201ENST00000215793 CALB2P22676 271 aa14□□□□□ -0.17
SF3A1-201ENST00000215793 OXCT1P55809 520 aa14□□□□□ -0.17
SF3A1-201ENST00000215793 RCN1Q15293 331 aa14□□□□□ -0.17
SF3A1-201ENST00000215793 MYO1HQ8N1T3 1032 aa14□□□□□ -0.17
SF3A1-201ENST00000215793 ZKSCAN4Q969J2 545 aaPredicted RBP14□□□□□ -0.17
SF3A1-201ENST00000215793 CLPBQ9H078 707 aa14□□□□□ -0.17
SF3A1-201ENST00000215793 ILF2Q12905 390 aaKnown RBP13.99□□□□□ -0.17
SF3A1-201ENST00000215793 C2CD6Q53TS8 623 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 BNC2Q6ZN30 1099 aaPredicted RBP13.99□□□□□ -0.17
SF3A1-201ENST00000215793 PDCD2LQ9BRP1 358 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 SHCBP1LQ9BZQ2 653 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 NMRK2Q9NPI5 230 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 V9GYQ6 96 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 TOMM70O94826 608 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 CAPZA2P47755 286 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 HERVK_113P62684 666 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 MPP3Q13368 585 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 PLEKHH3Q7Z736 793 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.99□□□□□ -0.17
SF3A1-201ENST00000215793 TBCBQ99426 244 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 SH3GL1Q99961 368 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 PCDH9Q9HC56 1237 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 DMGDHQ9UI17 866 aaKnown RBP13.99□□□□□ -0.17
SF3A1-201ENST00000215793 SHOC2Q9UQ13 582 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 MAGEB16A2A368 324 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 ALDH1A2O94788 518 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 THP07101 528 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 DDX39BQ13838 428 aaKnown RBP13.99□□□□□ -0.17
SF3A1-201ENST00000215793 FAM131BQ86XD5 332 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 ABRAQ8N0Z2 381 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 RXFP2Q8WXD0 754 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 CAVIN3Q969G5 261 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 TMEM121Q9BTD3 319 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 RTFDC1Q9BY42 306 aaPredicted RBP13.99□□□□□ -0.17
SF3A1-201ENST00000215793 GANQ9H2C0 597 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 DCLRE1BQ9H816 532 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 OSGEPQ9NPF4 335 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 MYO3AQ8NEV4 1616 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 MAP3K6O95382 1288 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 EPB42P16452 691 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 FGFR2P21802 821 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 MGAT5Q09328 741 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 BST2Q10589 180 aaKnown RBP13.99□□□□□ -0.17
SF3A1-201ENST00000215793 SFSWAPQ12872 951 aaKnown RBP13.99□□□□□ -0.17
SF3A1-201ENST00000215793 METTL7BQ6UX53 244 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 STRA8Q7Z7C7 330 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 SCUBE1Q8IWY4 988 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 KRT78Q8N1N4 520 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 ACTL9Q8TC94 416 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 PALMDQ9NP74 551 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 IARS2Q9NSE4 1012 aaKnown RBP13.99□□□□□ -0.17
SF3A1-201ENST00000215793 TRPM5Q9NZQ8 1165 aa13.99□□□□□ -0.17
SF3A1-201ENST00000215793 UBE2Q2LH0YL09 131 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 JCHAINP01591 159 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 TGFB3P10600 412 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 CPA3P15088 417 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 TFE3P19532 575 aaPredicted RBP13.98□□□□□ -0.17
SF3A1-201ENST00000215793 HNRNPH1P31943 449 aaKnown RBP13.98□□□□□ -0.17
SF3A1-201ENST00000215793 PTENP60484 403 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 MYL6P60660 151 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 KCNMA1Q12791 1236 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 SPACA6W5XKT8 324 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 NFIBO00712 420 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 YY1P25490 414 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 SERPINB1P30740 379 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 CSE1LP55060 971 aaKnown RBP13.98□□□□□ -0.17
SF3A1-201ENST00000215793 ORC1Q13415 861 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 NTRK3Q16288 839 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 PXMP2Q9NR77 195 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 RRN3Q9NYV6 651 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 HAO1Q9UJM8 370 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 ENO4A6NNW6 628 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 SERPINB5P36952 375 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 KPNA1P52294 538 aaPredicted RBP13.98□□□□□ -0.17
SF3A1-201ENST00000215793 AQP5P55064 265 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 R3HDM1Q15032 1099 aaKnown RBP13.98□□□□□ -0.17
SF3A1-201ENST00000215793 VCPIP1Q96JH7 1222 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 CACNA2D2Q9NY47 1150 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 POLLQ9UGP5 575 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 SCAF8Q9UPN6 1271 aaKnown RBP13.98□□□□□ -0.17
SF3A1-201ENST00000215793 DNAJC16Q9Y2G8 782 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 INO80Q9ULG1 1556 aaPredicted RBP13.98□□□□□ -0.17
SF3A1-201ENST00000215793 CKMP06732 381 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 ZNF23P17027 643 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 LRRC8DQ7L1W4 858 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 SLC47A2Q86VL8 602 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 DNERQ8NFT8 737 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 HIC2Q96JB3 615 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 AGO4Q9HCK5 861 aaKnown RBP13.98□□□□□ -0.17
SF3A1-201ENST00000215793 PDGFCQ9NRA1 345 aa13.98□□□□□ -0.17
SF3A1-201ENST00000215793 CAB39Q9Y376 341 aaPredicted RBP13.98□□□□□ -0.17
SF3A1-201ENST00000215793 CYTH3O43739 400 aa13.97□□□□□ -0.17
SF3A1-201ENST00000215793 CELF2O95319 508 aaKnown RBP13.97□□□□□ -0.17
SF3A1-201ENST00000215793 ATP6V1B1P15313 513 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms