RNA–Protein interactions for RNA: YOR171C

LCB4, Transcript of Sphingoid long-chain base kinase, yeast

Gene LCB4, Length 1,875 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCB4	YOR171C	TRS120	Q04183	1289 aa		4.36	□□□□□ -1.71
LCB4	YOR171C	PSH1	Q12161	406 aa		4.36	□□□□□ -1.71
LCB4	YOR171C	MNL2	Q12205	849 aa		4.36	□□□□□ -1.71
LCB4	YOR171C	TCB1	Q12466	1186 aa		4.36	□□□□□ -1.71
LCB4	YOR171C	ATE1	P16639	503 aa		4.35	□□□□□ -1.71
LCB4	YOR171C	PDC6	P26263	563 aa	Known RBP	4.35	□□□□□ -1.71
LCB4	YOR171C	QDR2	P40474	542 aa		4.35	□□□□□ -1.71
LCB4	YOR171C	ALD2	P47771	506 aa		4.35	□□□□□ -1.71
LCB4	YOR171C	MET4	P32389	672 aa		4.35	□□□□□ -1.71
LCB4	YOR171C	YTA6	P40328	754 aa		4.35	□□□□□ -1.71
LCB4	YOR171C	LCB5	Q06147	687 aa	Known RBP	4.35	□□□□□ -1.71
LCB4	YOR171C	RRP15	Q06511	250 aa	Predicted RBP	4.35	□□□□□ -1.71
LCB4	YOR171C	LEU1	P07264	779 aa	Known RBP	4.34	□□□□□ -1.71
LCB4	YOR171C	UFD2	P54860	961 aa		4.34	□□□□□ -1.71
LCB4	YOR171C	CDC19	P00549	500 aa	Known RBP	4.33	□□□□□ -1.72
LCB4	YOR171C	NAB2	P32505	525 aa	Known RBP RIP-Chip data	4.33	□□□□□ -1.72	not detected
LCB4	YOR171C	LDH1	P38139	375 aa		4.33	□□□□□ -1.72
LCB4	YOR171C	HXT8	P40886	569 aa		4.33	□□□□□ -1.72
LCB4	YOR171C	OPT2	Q06593	877 aa		4.33	□□□□□ -1.72
LCB4	YOR171C	RPC31	P17890	251 aa		4.32	□□□□□ -1.72
LCB4	YOR171C	KAP122	P32767	1081 aa		4.32	□□□□□ -1.72
LCB4	YOR171C	DYS1	P38791	387 aa		4.32	□□□□□ -1.72
LCB4	YOR171C	THI12	P42883	340 aa		4.32	□□□□□ -1.72
LCB4	YOR171C	THI5	P43534	340 aa		4.32	□□□□□ -1.72
LCB4	YOR171C	THI11	P47183	340 aa		4.32	□□□□□ -1.72
LCB4	YOR171C	UBP15	P50101	1230 aa		4.32	□□□□□ -1.72
LCB4	YOR171C	MTO1	P53070	669 aa		4.32	□□□□□ -1.72
LCB4	YOR171C	NRD1	P53617	575 aa	Known RBP RIP-Chip data	4.32	□□□□□ -1.72	not detected
LCB4	YOR171C	THI13	Q07748	340 aa		4.32	□□□□□ -1.72
LCB4	YOR171C	MSN1	P22148	382 aa		4.32	□□□□□ -1.72
LCB4	YOR171C	GLY1	P37303	387 aa	Known RBP	4.32	□□□□□ -1.72
LCB4	YOR171C	BSD2	P38356	321 aa		4.31	□□□□□ -1.72
LCB4	YOR171C	RGD2	P43556	714 aa		4.31	□□□□□ -1.72
LCB4	YOR171C	YFR016C	P43597	1233 aa	Known RBP	4.31	□□□□□ -1.72
LCB4	YOR171C	POL32	P47110	350 aa		4.31	□□□□□ -1.72
LCB4	YOR171C	UBP2	Q01476	1272 aa		4.31	□□□□□ -1.72
LCB4	YOR171C	ASF1	P32447	279 aa		4.3	□□□□□ -1.72
LCB4	YOR171C	SMC1	P32908	1225 aa		4.3	□□□□□ -1.72
LCB4	YOR171C	RGP1	P16664	663 aa		4.3	□□□□□ -1.72
LCB4	YOR171C	RAD55	P38953	406 aa		4.3	□□□□□ -1.72
LCB4	YOR171C	NTA1	P40354	457 aa		4.3	□□□□□ -1.72
LCB4	YOR171C	YLR346C	Q06139	101 aa		4.3	□□□□□ -1.72
LCB4	YOR171C	TY1A-BL	Q12266	440 aa		4.3	□□□□□ -1.72
LCB4	YOR171C	OSH7	P38755	437 aa		4.29	□□□□□ -1.72
LCB4	YOR171C	SKP1	P52286	194 aa		4.29	□□□□□ -1.72
LCB4	YOR171C	CDC55	Q00362	526 aa		4.29	□□□□□ -1.72
LCB4	YOR171C	NAM8	Q00539	523 aa	Known RBP	4.29	□□□□□ -1.72
LCB4	YOR171C	CUS1	Q02554	436 aa	Predicted RBP	4.29	□□□□□ -1.72
LCB4	YOR171C	YOR296W	Q08748	1289 aa		4.29	□□□□□ -1.72
LCB4	YOR171C	TIF6	Q12522	245 aa	Known RBP	4.29	□□□□□ -1.72
LCB4	YOR171C	PHO4	P07270	312 aa	Known RBP	4.28	□□□□□ -1.72
LCB4	YOR171C	GIP1	P38229	639 aa		4.28	□□□□□ -1.72
LCB4	YOR171C	KRI1	P42846	591 aa	Known RBP	4.28	□□□□□ -1.72
LCB4	YOR171C	SCW11	P53189	542 aa		4.28	□□□□□ -1.72
LCB4	YOR171C	STB3	Q12427	513 aa		4.28	□□□□□ -1.72
LCB4	YOR171C	ISW1	P38144	1129 aa		4.28	□□□□□ -1.72
LCB4	YOR171C	YNL011C	P53980	444 aa		4.28	□□□□□ -1.72
LCB4	YOR171C	RSC4	Q02206	625 aa		4.28	□□□□□ -1.72
LCB4	YOR171C	IRS4	P36115	615 aa	Known RBP	4.27	□□□□□ -1.73
LCB4	YOR171C	PAM1	P37304	830 aa	Known RBP	4.27	□□□□□ -1.73
LCB4	YOR171C	MRPL16	P38064	232 aa		4.27	□□□□□ -1.73
LCB4	YOR171C	FIR1	P40020	876 aa		4.27	□□□□□ -1.73
LCB4	YOR171C	PSY2	P40164	858 aa		4.27	□□□□□ -1.73
LCB4	YOR171C	TOS4	Q06266	489 aa		4.27	□□□□□ -1.73
LCB4	YOR171C	SEC8	P32855	1065 aa		4.26	□□□□□ -1.73
LCB4	YOR171C	DAK2	P43550	591 aa		4.26	□□□□□ -1.73
LCB4	YOR171C	YJR107W	P47145	328 aa		4.26	□□□□□ -1.73
LCB4	YOR171C	ITC1	P53125	1264 aa		4.26	□□□□□ -1.73
LCB4	YOR171C	YNR040W	P53736	256 aa		4.26	□□□□□ -1.73
LCB4	YOR171C	EMG1	Q06287	252 aa	Known RBP	4.26	□□□□□ -1.73
LCB4	YOR171C	TRK2	P28584	889 aa		4.26	□□□□□ -1.73
LCB4	YOR171C	ROG3	P43602	733 aa		4.26	□□□□□ -1.73
LCB4	YOR171C	CCP1	P00431	361 aa		4.25	□□□□□ -1.73
LCB4	YOR171C	FYV10	P40492	516 aa		4.25	□□□□□ -1.73
LCB4	YOR171C	NOP7	P53261	605 aa	Known RBP	4.25	□□□□□ -1.73
LCB4	YOR171C	OYE2	Q03558	400 aa	Known RBP	4.25	□□□□□ -1.73
LCB4	YOR171C	TY1A-MR1	Q04215	440 aa		4.25	□□□□□ -1.73
LCB4	YOR171C	BSC2	Q05611	235 aa		4.25	□□□□□ -1.73
LCB4	YOR171C	GCD6	P32501	712 aa	Known RBP	4.24	□□□□□ -1.73
LCB4	YOR171C	RPT1	P33299	467 aa	Known RBP	4.24	□□□□□ -1.73
LCB4	YOR171C	MNN4	P36044	1178 aa		4.24	□□□□□ -1.73
LCB4	YOR171C	APM2	P38700	605 aa		4.24	□□□□□ -1.73
LCB4	YOR171C	NUG1	P40010	520 aa	Known RBP	4.24	□□□□□ -1.73
LCB4	YOR171C	YIL165C	P40446	119 aa		4.24	□□□□□ -1.73
LCB4	YOR171C	SAM37	P50110	327 aa		4.24	□□□□□ -1.73
LCB4	YOR171C	MCM2	P29469	868 aa		4.24	□□□□□ -1.73
LCB4	YOR171C	SWE1	P32944	819 aa		4.24	□□□□□ -1.73
LCB4	YOR171C	MGE1	P38523	228 aa		4.24	□□□□□ -1.73
LCB4	YOR171C	AIM46	P38885	310 aa		4.24	□□□□□ -1.73
LCB4	YOR171C	LSB3	P43603	459 aa	Known RBP	4.24	□□□□□ -1.73
LCB4	YOR171C	MDG1	P53885	366 aa		4.24	□□□□□ -1.73
LCB4	YOR171C	CUZ1	P53899	274 aa		4.24	□□□□□ -1.73
LCB4	YOR171C	CTR9	P89105	1077 aa		4.24	□□□□□ -1.73
LCB4	YOR171C	NOC3	Q07896	663 aa	Predicted RBP	4.24	□□□□□ -1.73
LCB4	YOR171C	COB	P00163	385 aa		4.23	□□□□□ -1.73
LCB4	YOR171C	DIT1	P21623	536 aa		4.23	□□□□□ -1.73
LCB4	YOR171C	VPS35	P34110	944 aa		4.23	□□□□□ -1.73
LCB4	YOR171C	MET1	P36150	593 aa		4.23	□□□□□ -1.73
LCB4	YOR171C	NCL1	P38205	684 aa	Known RBP	4.23	□□□□□ -1.73
LCB4	YOR171C	MSC7	P38694	644 aa		4.23	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 16.1 ms