RNA–Protein interactions for RNA: YOL147C

PEX11, Transcript of Peroxisomal protein required for medium-chain fatty acid oxidation, yeast

Gene PEX11, Length 711 nt, Biotype protein coding, Subcellular localisation Peroxisome .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PEX11	YOL147C	MET1	P36150	593 aa		4.22	□□□□□ -1.73
PEX11	YOL147C	PPX1	P38698	397 aa		4.22	□□□□□ -1.73
PEX11	YOL147C	ECM23	Q02710	187 aa		4.22	□□□□□ -1.73
PEX11	YOL147C	UTP13	Q05946	817 aa	Known RBP	4.22	□□□□□ -1.73
PEX11	YOL147C	BRE1	Q07457	700 aa	Known RBP	4.22	□□□□□ -1.73
PEX11	YOL147C	YDL121C	Q07541	149 aa		4.22	□□□□□ -1.73
PEX11	YOL147C	CCP1	P00431	361 aa		4.21	□□□□□ -1.74
PEX11	YOL147C	TRL1	P09880	827 aa	Known RBP	4.21	□□□□□ -1.74
PEX11	YOL147C	ISW1	P38144	1129 aa		4.21	□□□□□ -1.74
PEX11	YOL147C	ICP55	P40051	511 aa		4.21	□□□□□ -1.74
PEX11	YOL147C	ATG3	P40344	310 aa		4.21	□□□□□ -1.74
PEX11	YOL147C	MDJ2	P42834	146 aa		4.21	□□□□□ -1.74
PEX11	YOL147C	TY4A-J	P47023	414 aa		4.21	□□□□□ -1.74
PEX11	YOL147C	ALD6	P54115	500 aa	Known RBP	4.21	□□□□□ -1.74
PEX11	YOL147C	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	4.21	□□□□□ -1.74	not detected
PEX11	YOL147C	ECM16	Q04217	1267 aa	Known RBP	4.21	□□□□□ -1.74
PEX11	YOL147C	POB3	Q04636	552 aa	Known RBP	4.21	□□□□□ -1.74
PEX11	YOL147C	SPT2	P06843	333 aa	Predicted RBP	4.2	□□□□□ -1.74
PEX11	YOL147C	MDJ1	P35191	511 aa		4.2	□□□□□ -1.74
PEX11	YOL147C	MPE1	P35728	441 aa	Known RBP	4.2	□□□□□ -1.74
PEX11	YOL147C	PBP2	P38151	413 aa	Known RBP RIP-Chip data	4.2	□□□□□ -1.74	not detected
PEX11	YOL147C	FYV10	P40492	516 aa		4.2	□□□□□ -1.74
PEX11	YOL147C	KTR7	P40504	517 aa		4.2	□□□□□ -1.74
PEX11	YOL147C	YJR107W	P47145	328 aa		4.2	□□□□□ -1.74
PEX11	YOL147C	YJR142W	P47173	342 aa		4.2	□□□□□ -1.74
PEX11	YOL147C	BDS1	Q08347	646 aa		4.2	□□□□□ -1.74
PEX11	YOL147C	WTM2	Q12206	467 aa		4.2	□□□□□ -1.74
PEX11	YOL147C	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.19	□□□□□ -1.74	not detected
PEX11	YOL147C	UTR2	P32623	467 aa		4.19	□□□□□ -1.74
PEX11	YOL147C	NSE3	Q05541	303 aa		4.19	□□□□□ -1.74
PEX11	YOL147C	HDA3	Q06623	655 aa		4.19	□□□□□ -1.74
PEX11	YOL147C	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	4.19	□□□□□ -1.74	not detected
PEX11	YOL147C	DPH6	Q12429	685 aa		4.19	□□□□□ -1.74
PEX11	YOL147C	VMA4	P22203	233 aa	Known RBP	4.18	□□□□□ -1.74
PEX11	YOL147C	TOA1	P32773	286 aa		4.18	□□□□□ -1.74
PEX11	YOL147C	UBX7	P38349	436 aa		4.18	□□□□□ -1.74
PEX11	YOL147C	ERP2	P39704	215 aa		4.18	□□□□□ -1.74
PEX11	YOL147C	LSB3	P43603	459 aa	Known RBP	4.18	□□□□□ -1.74
PEX11	YOL147C	DNM1	P54861	757 aa		4.18	□□□□□ -1.74
PEX11	YOL147C	NAM8	Q00539	523 aa	Known RBP	4.18	□□□□□ -1.74
PEX11	YOL147C	SSF2	Q12153	453 aa	Predicted RBP	4.18	□□□□□ -1.74
PEX11	YOL147C	PUS1	Q12211	544 aa	Known RBP	4.18	□□□□□ -1.74
PEX11	YOL147C	HIF1	Q12373	385 aa		4.18	□□□□□ -1.74
PEX11	YOL147C	BOI2	P39969	1040 aa		4.17	□□□□□ -1.74
PEX11	YOL147C	AIM9	P40053	627 aa	Known RBP	4.17	□□□□□ -1.74
PEX11	YOL147C	RPN4	Q03465	531 aa		4.17	□□□□□ -1.74
PEX11	YOL147C	GIR2	Q03768	265 aa	Predicted RBP	4.17	□□□□□ -1.74
PEX11	YOL147C	MNL2	Q12205	849 aa		4.17	□□□□□ -1.74
PEX11	YOL147C	YGR161W-C	Q3E744	92 aa		4.17	□□□□□ -1.74
PEX11	YOL147C	RAD2	P07276	1031 aa		4.16	□□□□□ -1.74
PEX11	YOL147C	SEC6	P32844	805 aa		4.16	□□□□□ -1.74
PEX11	YOL147C	MGE1	P38523	228 aa		4.16	□□□□□ -1.74
PEX11	YOL147C	MNN1	P39106	762 aa		4.16	□□□□□ -1.74
PEX11	YOL147C	BOL3	P39724	118 aa		4.16	□□□□□ -1.74
PEX11	YOL147C	BUD6	P41697	788 aa		4.16	□□□□□ -1.74
PEX11	YOL147C	LYS5	P50113	272 aa		4.16	□□□□□ -1.74
PEX11	YOL147C	CWC15	Q03772	175 aa	Known RBP	4.16	□□□□□ -1.74
PEX11	YOL147C	TMA64	Q04600	565 aa	Known RBP	4.16	□□□□□ -1.74
PEX11	YOL147C	NUT2	Q06213	157 aa		4.16	□□□□□ -1.74
PEX11	YOL147C	CDC53	Q12018	815 aa	Known RBP	4.16	□□□□□ -1.74
PEX11	YOL147C	FRT1	Q99332	602 aa		4.16	□□□□□ -1.74
PEX11	YOL147C	CDC19	P00549	500 aa	Known RBP	4.15	□□□□□ -1.75
PEX11	YOL147C	SWI5	P08153	709 aa		4.15	□□□□□ -1.75
PEX11	YOL147C	MET4	P32389	672 aa		4.15	□□□□□ -1.75
PEX11	YOL147C	GRX7	P38068	203 aa		4.15	□□□□□ -1.75
PEX11	YOL147C	FUI1	P38196	639 aa		4.15	□□□□□ -1.75
PEX11	YOL147C	YEN1	P40028	759 aa		4.15	□□□□□ -1.75
PEX11	YOL147C	ACS2	P52910	683 aa	Known RBP	4.15	□□□□□ -1.75
PEX11	YOL147C	ATG1	P53104	897 aa		4.15	□□□□□ -1.75
PEX11	YOL147C	VPS16	Q03308	798 aa		4.15	□□□□□ -1.75
PEX11	YOL147C	KAR1	P11927	433 aa		4.14	□□□□□ -1.75
PEX11	YOL147C	DAT1	P13483	248 aa	Known RBP	4.14	□□□□□ -1.75
PEX11	YOL147C	PDI1	P17967	522 aa	Known RBP	4.14	□□□□□ -1.75
PEX11	YOL147C	MCM2	P29469	868 aa		4.14	□□□□□ -1.75
PEX11	YOL147C	UBP12	P39538	1254 aa		4.14	□□□□□ -1.75
PEX11	YOL147C	DLD3	P39976	496 aa	Known RBP	4.14	□□□□□ -1.75
PEX11	YOL147C	UTP7	P40055	554 aa	Known RBP	4.14	□□□□□ -1.75
PEX11	YOL147C	MAD1	P40957	749 aa		4.14	□□□□□ -1.75
PEX11	YOL147C	RPS0B	P46654	252 aa	Known RBP	4.14	□□□□□ -1.75
PEX11	YOL147C	NSG2	P53898	299 aa		4.14	□□□□□ -1.75
PEX11	YOL147C	YPQ2	Q06328	317 aa		4.14	□□□□□ -1.75
PEX11	YOL147C	BDF2	Q07442	638 aa		4.14	□□□□□ -1.75
PEX11	YOL147C	TY1A-DR3	Q12441	440 aa		4.14	□□□□□ -1.75
PEX11	YOL147C	RPP2B	P02400	110 aa	Known RBP	4.13	□□□□□ -1.75
PEX11	YOL147C	RPS6A	P0CX37	236 aa	Known RBP	4.13	□□□□□ -1.75
PEX11	YOL147C	RPS6B	P0CX38	236 aa	Predicted RBP	4.13	□□□□□ -1.75
PEX11	YOL147C	GAL2	P13181	574 aa		4.13	□□□□□ -1.75
PEX11	YOL147C	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.13	□□□□□ -1.75	not detected
PEX11	YOL147C	PHO87	P25360	923 aa		4.13	□□□□□ -1.75
PEX11	YOL147C	TBS1	P38114	1094 aa		4.13	□□□□□ -1.75
PEX11	YOL147C	ENP1	P38333	483 aa	Known RBP	4.13	□□□□□ -1.75
PEX11	YOL147C	SSN3	P39073	555 aa		4.13	□□□□□ -1.75
PEX11	YOL147C	NOP2	P40991	618 aa	Known RBP	4.13	□□□□□ -1.75
PEX11	YOL147C	JJJ3	P47138	172 aa		4.13	□□□□□ -1.75
PEX11	YOL147C	ROM1	P53046	1155 aa		4.13	□□□□□ -1.75
PEX11	YOL147C	SVL3	Q03088	825 aa	Known RBP	4.13	□□□□□ -1.75
PEX11	YOL147C	SPR28	Q04921	423 aa		4.13	□□□□□ -1.75
PEX11	YOL147C	THI72	Q08579	599 aa		4.13	□□□□□ -1.75
PEX11	YOL147C	PIN2	Q12057	282 aa		4.13	□□□□□ -1.75
PEX11	YOL147C	PHM7	Q12252	991 aa		4.13	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 14.5 ms