RNA–Protein interactions for RNA: YHR060W

VMA22, Transcript of Protein that is required for vacuolar H+-ATPase (V-ATPase) function, yeast

Gene VMA22, Length 546 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA22	YHR060W	MAD1	P40957	749 aa		5.82	□□□□□ -1.48
VMA22	YHR060W	SCW11	P53189	542 aa		5.82	□□□□□ -1.48
VMA22	YHR060W	RMD1	Q03441	430 aa		5.82	□□□□□ -1.48
VMA22	YHR060W	TCB1	Q12466	1186 aa		5.82	□□□□□ -1.48
VMA22	YHR060W	CLN2	P20438	545 aa		5.81	□□□□□ -1.48
VMA22	YHR060W	PPG1	P32838	368 aa		5.81	□□□□□ -1.48
VMA22	YHR060W	MET1	P36150	593 aa		5.81	□□□□□ -1.48
VMA22	YHR060W	AHP1	P38013	176 aa	Known RBP	5.81	□□□□□ -1.48
VMA22	YHR060W	RNH70	P53331	553 aa		5.81	□□□□□ -1.48
VMA22	YHR060W	SSN3	P39073	555 aa		5.8	□□□□□ -1.48
VMA22	YHR060W	YPQ2	Q06328	317 aa		5.8	□□□□□ -1.48
VMA22	YHR060W	NGR1	P32831	672 aa	Known RBP	5.79	□□□□□ -1.48
VMA22	YHR060W	RTS3	P53289	263 aa		5.79	□□□□□ -1.48
VMA22	YHR060W	MAG2	Q06436	670 aa	Known RBP	5.79	□□□□□ -1.48
VMA22	YHR060W	MET4	P32389	672 aa		5.78	□□□□□ -1.48
VMA22	YHR060W	GBP2	P25555	427 aa	Known RBP RIP-Chip data	5.77	□□□□□ -1.49	not detected
VMA22	YHR060W	GAR1	P28007	205 aa	Known RBP	5.77	□□□□□ -1.49
VMA22	YHR060W	GCD6	P32501	712 aa	Known RBP	5.77	□□□□□ -1.49
VMA22	YHR060W	YKL091C	P33324	310 aa	Known RBP	5.77	□□□□□ -1.49
VMA22	YHR060W	OSH7	P38755	437 aa		5.77	□□□□□ -1.49
VMA22	YHR060W	VAC8	P39968	578 aa		5.77	□□□□□ -1.49
VMA22	YHR060W	SUB1	P54000	292 aa	Known RBP	5.77	□□□□□ -1.49
VMA22	YHR060W	WRS1	Q12109	432 aa	Known RBP	5.77	□□□□□ -1.49
VMA22	YHR060W	MNL2	Q12205	849 aa		5.77	□□□□□ -1.49
VMA22	YHR060W	TY1A-BL	Q12266	440 aa		5.77	□□□□□ -1.49
VMA22	YHR060W	LSO1	Q3E827	93 aa		5.77	□□□□□ -1.49
VMA22	YHR060W	FRT1	Q99332	602 aa		5.77	□□□□□ -1.49
VMA22	YHR060W	SCD5	P34758	872 aa		5.76	□□□□□ -1.49
VMA22	YHR060W	NUG1	P40010	520 aa	Known RBP	5.76	□□□□□ -1.49
VMA22	YHR060W	JJJ2	P46997	583 aa		5.76	□□□□□ -1.49
VMA22	YHR060W	TRS120	Q04183	1289 aa		5.76	□□□□□ -1.49
VMA22	YHR060W	PIN2	Q12057	282 aa		5.76	□□□□□ -1.49
VMA22	YHR060W	IRE1	P32361	1115 aa		5.75	□□□□□ -1.49
VMA22	YHR060W	YTA6	P40328	754 aa		5.75	□□□□□ -1.49
VMA22	YHR060W	UBP15	P50101	1230 aa		5.75	□□□□□ -1.49
VMA22	YHR060W	ALD6	P54115	500 aa	Known RBP	5.75	□□□□□ -1.49
VMA22	YHR060W	UFD2	P54860	961 aa		5.75	□□□□□ -1.49
VMA22	YHR060W	RGA2	Q06407	1009 aa		5.75	□□□□□ -1.49
VMA22	YHR060W	YOR131C	Q12486	218 aa		5.75	□□□□□ -1.49
VMA22	YHR060W	CDC19	P00549	500 aa	Known RBP	5.74	□□□□□ -1.49
VMA22	YHR060W	STI1	P15705	589 aa	Known RBP RIP-Chip data	5.74	□□□□□ -1.49	not detected
VMA22	YHR060W	SLA1	P32790	1244 aa		5.74	□□□□□ -1.49
VMA22	YHR060W	ACO2	P39533	789 aa		5.74	□□□□□ -1.49
VMA22	YHR060W	VPS16	Q03308	798 aa		5.74	□□□□□ -1.49
VMA22	YHR060W	UTP4	Q06679	776 aa	Known RBP	5.74	□□□□□ -1.49
VMA22	YHR060W	TOM20	P35180	183 aa		5.73	□□□□□ -1.49
VMA22	YHR060W	ALD3	P54114	506 aa		5.73	□□□□□ -1.49
VMA22	YHR060W	POB3	Q04636	552 aa	Known RBP	5.73	□□□□□ -1.49
VMA22	YHR060W	ESF1	Q06344	628 aa	Known RBP	5.73	□□□□□ -1.49
VMA22	YHR060W	PEP7	P32609	515 aa		5.72	□□□□□ -1.49
VMA22	YHR060W	RPT1	P33299	467 aa	Known RBP	5.72	□□□□□ -1.49
VMA22	YHR060W	MNR2	P35724	969 aa		5.72	□□□□□ -1.49
VMA22	YHR060W	RGA1	P39083	1007 aa		5.72	□□□□□ -1.49
VMA22	YHR060W	FYV10	P40492	516 aa		5.72	□□□□□ -1.49
VMA22	YHR060W	YGL081W	P53156	320 aa		5.72	□□□□□ -1.49
VMA22	YHR060W	OXR1	Q08952	273 aa		5.72	□□□□□ -1.49
VMA22	YHR060W	PHO4	P07270	312 aa	Known RBP	5.71	□□□□□ -1.5
VMA22	YHR060W	SUV3	P32580	737 aa		5.71	□□□□□ -1.5
VMA22	YHR060W	VPS35	P34110	944 aa		5.71	□□□□□ -1.5
VMA22	YHR060W	HXT5	P38695	592 aa		5.71	□□□□□ -1.5
VMA22	YHR060W	ALG12	P53730	551 aa		5.71	□□□□□ -1.5
VMA22	YHR060W	RPN4	Q03465	531 aa		5.71	□□□□□ -1.5
VMA22	YHR060W	NSE3	Q05541	303 aa		5.71	□□□□□ -1.5
VMA22	YHR060W	Q0182	Q9ZZW1	134 aa		5.71	□□□□□ -1.5
VMA22	YHR060W	RPP1A	P05318	106 aa	Predicted RBP	5.7	□□□□□ -1.5
VMA22	YHR060W	SHM1	P37292	490 aa	Predicted RBP	5.7	□□□□□ -1.5
VMA22	YHR060W	YJR008W	P47085	338 aa		5.7	□□□□□ -1.5
VMA22	YHR060W	SAM37	P50110	327 aa		5.7	□□□□□ -1.5
VMA22	YHR060W	TY1A-MR1	Q04215	440 aa		5.7	□□□□□ -1.5
VMA22	YHR060W	UTP14	Q04500	899 aa	Known RBP	5.7	□□□□□ -1.5
VMA22	YHR060W	SSF2	Q12153	453 aa	Predicted RBP	5.7	□□□□□ -1.5
VMA22	YHR060W	TY1A-DR3	Q12441	440 aa		5.7	□□□□□ -1.5
VMA22	YHR060W	RPS31	P05759	152 aa	Known RBP	5.69	□□□□□ -1.5
VMA22	YHR060W	CIT2	P08679	460 aa		5.69	□□□□□ -1.5
VMA22	YHR060W	TSR4	P25040	408 aa		5.69	□□□□□ -1.5
VMA22	YHR060W	PDC6	P26263	563 aa	Known RBP	5.69	□□□□□ -1.5
VMA22	YHR060W	NOP2	P40991	618 aa	Known RBP	5.69	□□□□□ -1.5
VMA22	YHR060W	IOC3	P43596	787 aa		5.69	□□□□□ -1.5
VMA22	YHR060W	ROG3	P43602	733 aa		5.69	□□□□□ -1.5
VMA22	YHR060W	CWC24	P53769	259 aa		5.69	□□□□□ -1.5
VMA22	YHR060W	CAF120	P53836	1060 aa		5.69	□□□□□ -1.5
VMA22	YHR060W	UBP3	Q01477	912 aa	Known RBP RIP-Chip data	5.69	□□□□□ -1.5	not detected
VMA22	YHR060W	CAB1	Q04430	367 aa		5.69	□□□□□ -1.5
VMA22	YHR060W	UBX5	Q06682	500 aa		5.69	□□□□□ -1.5
VMA22	YHR060W	CDC53	Q12018	815 aa	Known RBP	5.69	□□□□□ -1.5
VMA22	YHR060W	MLF3	P32047	452 aa		5.68	□□□□□ -1.5
VMA22	YHR060W	PET112	P33893	541 aa		5.68	□□□□□ -1.5
VMA22	YHR060W	YBR197C	P38306	217 aa		5.68	□□□□□ -1.5
VMA22	YHR060W	CIC1	P38779	376 aa	Known RBP	5.68	□□□□□ -1.5
VMA22	YHR060W	DAK2	P43550	591 aa		5.68	□□□□□ -1.5
VMA22	YHR060W	VPS72	Q03388	795 aa		5.68	□□□□□ -1.5
VMA22	YHR060W	PSH1	Q12161	406 aa		5.68	□□□□□ -1.5
VMA22	YHR060W	LEU1	P07264	779 aa	Known RBP	5.67	□□□□□ -1.5
VMA22	YHR060W	MCM2	P29469	868 aa		5.67	□□□□□ -1.5
VMA22	YHR060W	YIR007W	P40566	764 aa		5.67	□□□□□ -1.5
VMA22	YHR060W	YGR122W	P53272	402 aa		5.67	□□□□□ -1.5
VMA22	YHR060W	YNL165W	P53891	406 aa		5.67	□□□□□ -1.5
VMA22	YHR060W	NAM8	Q00539	523 aa	Known RBP	5.67	□□□□□ -1.5
VMA22	YHR060W	FOX2	Q02207	900 aa	Known RBP	5.67	□□□□□ -1.5
VMA22	YHR060W	SPR28	Q04921	423 aa		5.67	□□□□□ -1.5

Retrieved 100 of 5,963 RNA–protein pairs in 11.8 ms