RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W CUS1Q02554 436 aaPredicted RBP6.35□□□□□ -1.39
UPF3YGR072W YNR040WP53736 256 aa6.34□□□□□ -1.39
UPF3YGR072W MRX10Q05648 414 aa6.34□□□□□ -1.39
UPF3YGR072W TRP3P00937 484 aa6.33□□□□□ -1.4
UPF3YGR072W YKR073CP36153 106 aa6.32□□□□□ -1.4
UPF3YGR072W MRP10O75012 95 aa6.31□□□□□ -1.4
UPF3YGR072W ENO1P00924 437 aaKnown RBP6.31□□□□□ -1.4
UPF3YGR072W SFA1P32771 386 aa6.31□□□□□ -1.4
UPF3YGR072W KAP122P32767 1081 aa6.3□□□□□ -1.4
UPF3YGR072W LEO1P38439 464 aa6.3□□□□□ -1.4
UPF3YGR072W APM2P38700 605 aa6.3□□□□□ -1.4
UPF3YGR072W UTP4Q06679 776 aaKnown RBP6.3□□□□□ -1.4
UPF3YGR072W MED7Q08278 222 aa6.3□□□□□ -1.4
UPF3YGR072W COQ2P32378 372 aa6.29□□□□□ -1.4
UPF3YGR072W NAB2P32505 525 aaKnown RBP RIP-Chip data6.29□□□□□ -1.4 RIP-Chip
UPF3YGR072W KAE1P36132 386 aa6.29□□□□□ -1.4
UPF3YGR072W YLR122CQ12312 125 aa6.28□□□□□ -1.4
UPF3YGR072W BIM1P40013 344 aa6.27□□□□□ -1.41
UPF3YGR072W TAF7Q05021 590 aa6.27□□□□□ -1.41
UPF3YGR072W TIF1P10081 395 aaKnown RBP6.26□□□□□ -1.41
UPF3YGR072W RPC31P17890 251 aa6.26□□□□□ -1.41
UPF3YGR072W LIP5P32875 414 aa6.26□□□□□ -1.41
UPF3YGR072W HXT5P38695 592 aa6.26□□□□□ -1.41
UPF3YGR072W ATG32P40458 529 aa6.26□□□□□ -1.41
UPF3YGR072W CTH1P47976 325 aa6.26□□□□□ -1.41
UPF3YGR072W PEP12P32854 288 aa6.25□□□□□ -1.41
UPF3YGR072W SCD5P34758 872 aa6.25□□□□□ -1.41
UPF3YGR072W ACS2P52910 683 aaKnown RBP6.25□□□□□ -1.41
UPF3YGR072W IDI1P15496 288 aa6.24□□□□□ -1.41
UPF3YGR072W RTG2P32608 588 aaKnown RBP6.24□□□□□ -1.41
UPF3YGR072W TOS1P38288 455 aa6.24□□□□□ -1.41
UPF3YGR072W NGR1P32831 672 aaKnown RBP6.23□□□□□ -1.41
UPF3YGR072W RPL34BP40525 121 aaKnown RBP6.23□□□□□ -1.41
UPF3YGR072W UBP1P25037 809 aa6.22□□□□□ -1.41
UPF3YGR072W RSC6P25632 483 aa6.22□□□□□ -1.41
UPF3YGR072W PUB1P32588 453 aaKnown RBP RIP-Chip data6.22□□□□□ -1.41not detected
UPF3YGR072W TY4B-PA0A0B7P3V8 1104 aa6.21□□□□□ -1.42
UPF3YGR072W QDR2P40474 542 aa6.21□□□□□ -1.42
UPF3YGR072W SLP1Q12232 587 aa6.21□□□□□ -1.42
UPF3YGR072W TY4A-HQ6Q5P6 413 aa6.21□□□□□ -1.42
UPF3YGR072W PHO87P25360 923 aa6.2□□□□□ -1.42
UPF3YGR072W SAF1P38352 637 aa6.2□□□□□ -1.42
UPF3YGR072W KTR7P40504 517 aa6.2□□□□□ -1.42
UPF3YGR072W TED1P40533 473 aa6.2□□□□□ -1.42
UPF3YGR072W HGH1P48362 394 aaKnown RBP6.2□□□□□ -1.42
UPF3YGR072W ITC1P53125 1264 aa6.2□□□□□ -1.42
UPF3YGR072W YGR130CP53278 816 aa6.2□□□□□ -1.42
UPF3YGR072W AOS1Q06624 347 aa6.2□□□□□ -1.42
UPF3YGR072W BRE4Q07660 1125 aa6.19□□□□□ -1.42
UPF3YGR072W TY1A-NL1Q12391 440 aaKnown RBP6.19□□□□□ -1.42
UPF3YGR072W CHS2P14180 963 aa6.18□□□□□ -1.42
UPF3YGR072W NAM7P30771 971 aaKnown RBP6.17□□□□□ -1.42
UPF3YGR072W ELM1P32801 640 aa6.17□□□□□ -1.42
UPF3YGR072W GIP2P40036 548 aa6.17□□□□□ -1.42
UPF3YGR072W YER156CP40093 338 aaKnown RBP6.17□□□□□ -1.42
UPF3YGR072W GAS4Q08271 471 aa6.17□□□□□ -1.42
UPF3YGR072W HAP4P14064 554 aa6.16□□□□□ -1.42
UPF3YGR072W AKR1P39010 764 aa6.16□□□□□ -1.42
UPF3YGR072W MAG2Q06436 670 aaKnown RBP6.15□□□□□ -1.42
UPF3YGR072W PUF3Q07807 879 aaKnown RBP RIP-Chip data6.15□□□□□ -1.42not detected
UPF3YGR072W SOK2P53438 785 aaPredicted RBP6.14□□□□□ -1.43
UPF3YGR072W ROM1P53046 1155 aa6.13□□□□□ -1.43
UPF3YGR072W CYC7P00045 113 aa6.12□□□□□ -1.43
UPF3YGR072W YOR296WQ08748 1289 aa6.12□□□□□ -1.43
UPF3YGR072W REC8Q12188 680 aa6.12□□□□□ -1.43
UPF3YGR072W DSE4P53753 1117 aa6.11□□□□□ -1.43
UPF3YGR072W SIS2P36024 562 aa6.1□□□□□ -1.43
UPF3YGR072W SPO74P45819 413 aa6.1□□□□□ -1.43
UPF3YGR072W VMA3P25515 160 aa6.09□□□□□ -1.43
UPF3YGR072W BSD2P38356 321 aa6.09□□□□□ -1.43
UPF3YGR072W CAB1Q04430 367 aa6.09□□□□□ -1.43
UPF3YGR072W GAL2P13181 574 aa6.08□□□□□ -1.44
UPF3YGR072W UBP5P39944 805 aa6.08□□□□□ -1.44
UPF3YGR072W YJL181WP46987 611 aa6.08□□□□□ -1.44
UPF3YGR072W RNQ1P25367 405 aa6.07□□□□□ -1.44
UPF3YGR072W SUV3P32580 737 aa6.07□□□□□ -1.44
UPF3YGR072W MRPL33P20084 86 aa6.06□□□□□ -1.44
UPF3YGR072W VAN1P23642 535 aa6.06□□□□□ -1.44
UPF3YGR072W GIP1P38229 639 aa6.06□□□□□ -1.44
UPF3YGR072W RSC2Q06488 889 aa6.06□□□□□ -1.44
UPF3YGR072W SEA4P38164 1038 aa6.05□□□□□ -1.44
UPF3YGR072W DYS1P38791 387 aa6.05□□□□□ -1.44
UPF3YGR072W CWH41P53008 833 aa6.04□□□□□ -1.44
UPF3YGR072W PPT1P53043 513 aa6.04□□□□□ -1.44
UPF3YGR072W FOX2Q02207 900 aaKnown RBP6.04□□□□□ -1.44
UPF3YGR072W PAN5P38787 379 aa6.03□□□□□ -1.44
UPF3YGR072W YIL165CP40446 119 aa6.02□□□□□ -1.45
UPF3YGR072W MSB1P21339 1137 aaKnown RBP6.01□□□□□ -1.45
UPF3YGR072W SEG2P34250 1132 aa6.01□□□□□ -1.45
UPF3YGR072W TGL4P36165 910 aa6.01□□□□□ -1.45
UPF3YGR072W LDH1P38139 375 aa6.01□□□□□ -1.45
UPF3YGR072W SDH1Q00711 640 aa6.01□□□□□ -1.45
UPF3YGR072W TRS33Q99394 268 aa6.01□□□□□ -1.45
UPF3YGR072W LRG1P35688 1017 aa6□□□□□ -1.45
UPF3YGR072W YBR197CP38306 217 aa6□□□□□ -1.45
UPF3YGR072W INP51P40559 946 aaKnown RBP6□□□□□ -1.45
UPF3YGR072W ISW1P38144 1129 aa5.99□□□□□ -1.45
UPF3YGR072W NCE103P53615 221 aa5.99□□□□□ -1.45
UPF3YGR072W ECM23Q02710 187 aa5.99□□□□□ -1.45
UPF3YGR072W TTI1P36097 1038 aa5.98□□□□□ -1.45
Retrieved 100 of 5,963 RNA–protein pairs in 182.3 ms