RNA–Protein interactions for RNA: YEL027W

VMA3, Transcript of Proteolipid subunit c of the V0 domain of vacuolar H(+)-ATPase, yeast

Gene VMA3, Length 483 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VMA3	YEL027W	PRP42	Q03776	544 aa	Known RBP	7.87	□□□□□ -1.15
VMA3	YEL027W	GCD7	P32502	381 aa	Predicted RBP	7.86	□□□□□ -1.15
VMA3	YEL027W	SEN54	Q02825	467 aa	Predicted RBP	7.86	□□□□□ -1.15
VMA3	YEL027W	SNU66	Q12420	587 aa	Predicted RBP	7.86	□□□□□ -1.15
VMA3	YEL027W	IRC4	Q03036	179 aa		7.85	□□□□□ -1.15
VMA3	YEL027W	TYW1	Q08960	810 aa	Known RBP	7.85	□□□□□ -1.15
VMA3	YEL027W	POM152	P39685	1337 aa		7.84	□□□□□ -1.15
VMA3	YEL027W	LCB1	P25045	558 aa	Known RBP	7.84	□□□□□ -1.15
VMA3	YEL027W	SSF1	P38789	453 aa	Predicted RBP	7.84	□□□□□ -1.15
VMA3	YEL027W	ILV3	P39522	585 aa	Known RBP	7.84	□□□□□ -1.15
VMA3	YEL027W	HXT10	P43581	546 aa		7.84	□□□□□ -1.15
VMA3	YEL027W	FLO11	P08640	1367 aa		7.84	□□□□□ -1.16
VMA3	YEL027W	NUG1	P40010	520 aa	Known RBP	7.83	□□□□□ -1.16
VMA3	YEL027W	TOS4	Q06266	489 aa		7.83	□□□□□ -1.16
VMA3	YEL027W	PSF3	Q12146	194 aa		7.83	□□□□□ -1.16
VMA3	YEL027W	ARG82	P07250	355 aa		7.82	□□□□□ -1.16
VMA3	YEL027W	CBP1	P07252	654 aa		7.82	□□□□□ -1.16
VMA3	YEL027W	JJJ2	P46997	583 aa		7.82	□□□□□ -1.16
VMA3	YEL027W	ADR1	P07248	1323 aa		7.81	□□□□□ -1.16
VMA3	YEL027W	RPS7A	P26786	190 aa	Known RBP	7.81	□□□□□ -1.16
VMA3	YEL027W	NMD2	P38798	1089 aa	Known RBP	7.81	□□□□□ -1.16
VMA3	YEL027W	ACK1	Q07622	623 aa	Predicted RBP	7.81	□□□□□ -1.16
VMA3	YEL027W	WRS1	Q12109	432 aa	Known RBP	7.81	□□□□□ -1.16
VMA3	YEL027W	BSD2	P38356	321 aa		7.8	□□□□□ -1.16
VMA3	YEL027W	ECM16	Q04217	1267 aa	Known RBP	7.8	□□□□□ -1.16
VMA3	YEL027W	NCB2	Q92317	146 aa		7.8	□□□□□ -1.16
VMA3	YEL027W	UTP7	P40055	554 aa	Known RBP	7.79	□□□□□ -1.16
VMA3	YEL027W	RRT6	P53117	311 aa	Predicted RBP	7.79	□□□□□ -1.16
VMA3	YEL027W	TIF6	Q12522	245 aa	Known RBP	7.79	□□□□□ -1.16
VMA3	YEL027W	DUR1,2	P32528	1835 aa	Known RBP	7.78	□□□□□ -1.16
VMA3	YEL027W	HVG1	P0CE11	249 aa		7.78	□□□□□ -1.16
VMA3	YEL027W	RFC1	P38630	861 aa	Known RBP	7.78	□□□□□ -1.16
VMA3	YEL027W	YFH7	P43591	353 aa		7.78	□□□□□ -1.16
VMA3	YEL027W	MTC3	P53077	123 aa		7.78	□□□□□ -1.16
VMA3	YEL027W	GYP5	Q12344	894 aa		7.78	□□□□□ -1.16
VMA3	YEL027W	SRF1	Q12516	437 aa		7.78	□□□□□ -1.16
VMA3	YEL027W	CSR2	Q12734	1121 aa		7.78	□□□□□ -1.16
VMA3	YEL027W	PNT1	P38969	423 aa		7.77	□□□□□ -1.17
VMA3	YEL027W	BDP1	P46678	594 aa		7.77	□□□□□ -1.17
VMA3	YEL027W	YJL171C	P46992	396 aa		7.77	□□□□□ -1.17
VMA3	YEL027W	SEC18	P18759	758 aa	Known RBP	7.76	□□□□□ -1.17
VMA3	YEL027W	RPT3	P33298	428 aa	Known RBP	7.76	□□□□□ -1.17
VMA3	YEL027W	PCS60	P38137	543 aa	Known RBP RIP-Chip data	7.76	□□□□□ -1.17	not detected
VMA3	YEL027W	NIT1	P40447	199 aa		7.76	□□□□□ -1.17
VMA3	YEL027W	PUS6	P53294	404 aa		7.76	□□□□□ -1.17
VMA3	YEL027W	CDC16	P09798	840 aa		7.75	□□□□□ -1.17
VMA3	YEL027W	GAL2	P13181	574 aa		7.75	□□□□□ -1.17
VMA3	YEL027W	SLA1	P32790	1244 aa		7.75	□□□□□ -1.17
VMA3	YEL027W	GLO3	P38682	493 aa	Known RBP	7.75	□□□□□ -1.17
VMA3	YEL027W	YGL242C	P53066	181 aa		7.75	□□□□□ -1.17
VMA3	YEL027W	CST9	Q06032	482 aa		7.75	□□□□□ -1.17
VMA3	YEL027W	NKP2	Q06162	153 aa		7.75	□□□□□ -1.17
VMA3	YEL027W	NOT3	P06102	836 aa	Known RBP	7.74	□□□□□ -1.17
VMA3	YEL027W	MLC1	P53141	149 aa		7.74	□□□□□ -1.17
VMA3	YEL027W	AAD16	Q02895	342 aa		7.74	□□□□□ -1.17
VMA3	YEL027W	RRI2	Q12348	645 aa		7.74	□□□□□ -1.17
VMA3	YEL027W	ECM21	P38167	1117 aa	Known RBP	7.73	□□□□□ -1.17
VMA3	YEL027W	RSC30	P38781	883 aa		7.73	□□□□□ -1.17
VMA3	YEL027W	YIR042C	P40586	236 aa		7.73	□□□□□ -1.17
VMA3	YEL027W	APL6	P46682	809 aa		7.73	□□□□□ -1.17
VMA3	YEL027W	INM2	Q05533	292 aa		7.73	□□□□□ -1.17
VMA3	YEL027W	PDR18	P53756	1333 aa		7.73	□□□□□ -1.17
VMA3	YEL027W	GSC2	P40989	1895 aa		7.72	□□□□□ -1.17
VMA3	YEL027W	AI2	P03876	854 aa		7.72	□□□□□ -1.17
VMA3	YEL027W	PIF1	P07271	859 aa		7.72	□□□□□ -1.17
VMA3	YEL027W	PTK1	P36002	662 aa	Predicted RBP	7.72	□□□□□ -1.17
VMA3	YEL027W	APE3	P37302	537 aa	Known RBP	7.72	□□□□□ -1.17
VMA3	YEL027W	HAL5	P38970	855 aa	Known RBP	7.72	□□□□□ -1.17
VMA3	YEL027W	YNL193W	P53870	558 aa		7.72	□□□□□ -1.17
VMA3	YEL027W	ALO1	P54783	526 aa	Known RBP	7.72	□□□□□ -1.17
VMA3	YEL027W	RAD50	P12753	1312 aa		7.72	□□□□□ -1.17
VMA3	YEL027W	SNF3	P10870	884 aa		7.71	□□□□□ -1.18
VMA3	YEL027W	RPC31	P17890	251 aa		7.71	□□□□□ -1.18
VMA3	YEL027W	MOT2	P34909	587 aa	Known RBP	7.71	□□□□□ -1.18
VMA3	YEL027W	KTR3	P38130	404 aa	Predicted RBP	7.71	□□□□□ -1.18
VMA3	YEL027W	RBA50	Q04418	439 aa		7.71	□□□□□ -1.18
VMA3	YEL027W	RPN7	Q06103	429 aa	Known RBP	7.71	□□□□□ -1.18
VMA3	YEL027W	RAD53	P22216	821 aa		7.7	□□□□□ -1.18
VMA3	YEL027W	MDL2	P33311	773 aa		7.7	□□□□□ -1.18
VMA3	YEL027W	NCS6	P53088	359 aa		7.7	□□□□□ -1.18
VMA3	YEL027W	BRE1	Q07457	700 aa	Known RBP	7.7	□□□□□ -1.18
VMA3	YEL027W	TPS3	P38426	1054 aa	Known RBP	7.69	□□□□□ -1.18
VMA3	YEL027W	KEL1	P38853	1164 aa	Known RBP	7.69	□□□□□ -1.18
VMA3	YEL027W	GIN4	Q12263	1142 aa		7.69	□□□□□ -1.18
VMA3	YEL027W	PMA1	P05030	918 aa	Known RBP	7.68	□□□□□ -1.18
VMA3	YEL027W	VAS1	P07806	1104 aa	Known RBP	7.68	□□□□□ -1.18
VMA3	YEL027W	PFK2	P16862	959 aa	Known RBP RIP-Chip data	7.68	□□□□□ -1.18	not detected
VMA3	YEL027W	SDH2	P21801	266 aa		7.68	□□□□□ -1.18
VMA3	YEL027W	ADP1	P25371	1049 aa		7.68	□□□□□ -1.18
VMA3	YEL027W	RMD1	Q03441	430 aa		7.68	□□□□□ -1.18
VMA3	YEL027W	CYB2	P00175	591 aa		7.67	□□□□□ -1.18
VMA3	YEL027W	BOI1	P38041	980 aa	Known RBP	7.67	□□□□□ -1.18
VMA3	YEL027W	PIP2	P52960	996 aa		7.67	□□□□□ -1.18
VMA3	YEL027W	MRPS35	P53292	345 aa		7.67	□□□□□ -1.18
VMA3	YEL027W	JIP4	Q03361	876 aa		7.67	□□□□□ -1.18
VMA3	YEL027W	PPM2	Q08282	695 aa		7.67	□□□□□ -1.18
VMA3	YEL027W	KTR1	P27810	393 aa	Known RBP	7.66	□□□□□ -1.18
VMA3	YEL027W	ASH1	P34233	588 aa		7.66	□□□□□ -1.18
VMA3	YEL027W	OSH3	P38713	996 aa	Known RBP	7.66	□□□□□ -1.18
VMA3	YEL027W	EPS1	P40557	701 aa		7.66	□□□□□ -1.18

Retrieved 100 of 5,963 RNA–protein pairs in 31.5 ms