RNA–Protein interactions for RNA: YEL012W

UBC8, Transcript of Ubiquitin-conjugating enzyme that regulates gluconeogenesis, yeast

Gene UBC8, Length 657 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC8	YEL012W	VAC17	P25591	423 aa		6.15	□□□□□ -1.42
UBC8	YEL012W	STE20	Q03497	939 aa	Known RBP	6.15	□□□□□ -1.42
UBC8	YEL012W	KTR7	P40504	517 aa		6.14	□□□□□ -1.43
UBC8	YEL012W	PAT1	P25644	796 aa	Known RBP	6.13	□□□□□ -1.43
UBC8	YEL012W	CDC3	P32457	520 aa	Known RBP	6.13	□□□□□ -1.43
UBC8	YEL012W	SPT16	P32558	1035 aa	Known RBP	6.13	□□□□□ -1.43
UBC8	YEL012W	GAL2	P13181	574 aa		6.12	□□□□□ -1.43
UBC8	YEL012W	RPL34A	P87262	121 aa	Predicted RBP	6.12	□□□□□ -1.43
UBC8	YEL012W	ECM23	Q02710	187 aa		6.12	□□□□□ -1.43
UBC8	YEL012W	UTP13	Q05946	817 aa	Known RBP	6.11	□□□□□ -1.43
UBC8	YEL012W	TY4B-H	P0C2J7	1802 aa		6.11	□□□□□ -1.43
UBC8	YEL012W	TY4B-J	P47024	1803 aa		6.11	□□□□□ -1.43
UBC8	YEL012W	IKI3	Q06706	1349 aa	Known RBP	6.1	□□□□□ -1.43
UBC8	YEL012W	SOH1	P38633	127 aa		6.1	□□□□□ -1.43
UBC8	YEL012W	RAV1	P47104	1357 aa		6.09	□□□□□ -1.43
UBC8	YEL012W	PRP45	P28004	379 aa	Predicted RBP	6.09	□□□□□ -1.43
UBC8	YEL012W	IXR1	P33417	597 aa		6.09	□□□□□ -1.43
UBC8	YEL012W	HAL5	P38970	855 aa	Known RBP	6.09	□□□□□ -1.43
UBC8	YEL012W	ATG3	P40344	310 aa		6.09	□□□□□ -1.43
UBC8	YEL012W	URB1	P34241	1764 aa	Known RBP	6.08	□□□□□ -1.44
UBC8	YEL012W	PHO87	P25360	923 aa		6.08	□□□□□ -1.44
UBC8	YEL012W	SSF1	P38789	453 aa	Predicted RBP	6.08	□□□□□ -1.44
UBC8	YEL012W	ALD4	P46367	519 aa	Known RBP	6.08	□□□□□ -1.44
UBC8	YEL012W	UBX7	P38349	436 aa		6.07	□□□□□ -1.44
UBC8	YEL012W	TPS3	P38426	1054 aa	Known RBP	6.07	□□□□□ -1.44
UBC8	YEL012W	RPN11	P43588	306 aa	Known RBP	6.07	□□□□□ -1.44
UBC8	YEL012W	ACS2	P52910	683 aa	Known RBP	6.07	□□□□□ -1.44
UBC8	YEL012W	YBL086C	P38177	466 aa		6.06	□□□□□ -1.44
UBC8	YEL012W	ROM1	P53046	1155 aa		6.06	□□□□□ -1.44
UBC8	YEL012W	TAF5	P38129	798 aa		6.05	□□□□□ -1.44
UBC8	YEL012W	CWC15	Q03772	175 aa	Known RBP	6.05	□□□□□ -1.44
UBC8	YEL012W	FKS3	Q04952	1785 aa		6.05	□□□□□ -1.44
UBC8	YEL012W	CST6	P40535	587 aa		6.04	□□□□□ -1.44
UBC8	YEL012W	BDP1	P46678	594 aa		6.04	□□□□□ -1.44
UBC8	YEL012W	PUS5	Q06244	254 aa		6.04	□□□□□ -1.44
UBC8	YEL012W	HAT1	Q12341	374 aa		6.04	□□□□□ -1.44
UBC8	YEL012W	HAP4	P14064	554 aa		6.03	□□□□□ -1.44
UBC8	YEL012W	UBP1	P25037	809 aa		6.03	□□□□□ -1.44
UBC8	YEL012W	DOT5	P40553	215 aa		6.03	□□□□□ -1.44
UBC8	YEL012W	LYS4	P49367	693 aa	Predicted RBP	6.03	□□□□□ -1.44
UBC8	YEL012W	RCM1	P53972	490 aa		6.03	□□□□□ -1.44
UBC8	YEL012W	SEN54	Q02825	467 aa	Predicted RBP	6.03	□□□□□ -1.44
UBC8	YEL012W	ISR1	Q06098	443 aa	Known RBP	6.03	□□□□□ -1.44
UBC8	YEL012W	TSC13	Q99190	310 aa		6.03	□□□□□ -1.44
UBC8	YEL012W	NPR2	P39923	615 aa		6.02	□□□□□ -1.45
UBC8	YEL012W	EMW1	P42842	904 aa	Known RBP	6.02	□□□□□ -1.45
UBC8	YEL012W	ATG20	Q07528	640 aa		6.02	□□□□□ -1.45
UBC8	YEL012W	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	6.02	□□□□□ -1.45	RIP-Chip
UBC8	YEL012W	PSK1	P31374	1356 aa		6.02	□□□□□ -1.45
UBC8	YEL012W	RTC1	Q08281	1341 aa		6.01	□□□□□ -1.45
UBC8	YEL012W	PDI1	P17967	522 aa	Known RBP	6.01	□□□□□ -1.45
UBC8	YEL012W	PRP5	P21372	849 aa	Predicted RBP	6.01	□□□□□ -1.45
UBC8	YEL012W	PPH3	P32345	308 aa		6.01	□□□□□ -1.45
UBC8	YEL012W	MSB3	P48566	633 aa	Predicted RBP	6.01	□□□□□ -1.45
UBC8	YEL012W	HDA3	Q06623	655 aa		6.01	□□□□□ -1.45
UBC8	YEL012W	GAS4	Q08271	471 aa		6.01	□□□□□ -1.45
UBC8	YEL012W	PAF1	P38351	445 aa		6	□□□□□ -1.45
UBC8	YEL012W	AIR1	P40507	360 aa	Known RBP	6	□□□□□ -1.45
UBC8	YEL012W	YPL062W	Q02781	134 aa		6	□□□□□ -1.45
UBC8	YEL012W	FRK1	Q03002	865 aa	Predicted RBP	6	□□□□□ -1.45
UBC8	YEL012W	PUF6	Q04373	656 aa	Known RBP	6	□□□□□ -1.45
UBC8	YEL012W	YRF1-3	P0CX14	1859 aa		5.99	□□□□□ -1.45
UBC8	YEL012W	YRF1-7	P0CX15	1859 aa		5.99	□□□□□ -1.45
UBC8	YEL012W	YRF1-6	P53819	1859 aa		5.99	□□□□□ -1.45
UBC8	YEL012W	MIP1	P15801	1254 aa		5.99	□□□□□ -1.45
UBC8	YEL012W	KIP2	P28743	706 aa		5.99	□□□□□ -1.45
UBC8	YEL012W	AIM9	P40053	627 aa	Known RBP	5.99	□□□□□ -1.45
UBC8	YEL012W	CLA4	P48562	842 aa		5.99	□□□□□ -1.45
UBC8	YEL012W	FOX2	Q02207	900 aa	Known RBP	5.99	□□□□□ -1.45
UBC8	YEL012W	TAF8	Q03750	510 aa		5.99	□□□□□ -1.45
UBC8	YEL012W	ERP5	P38819	212 aa		5.98	□□□□□ -1.45
UBC8	YEL012W	CTH1	P47976	325 aa		5.98	□□□□□ -1.45
UBC8	YEL012W	SYH1	Q02875	849 aa	Known RBP	5.98	□□□□□ -1.45
UBC8	YEL012W	YBL113C	Q7M4S9	792 aa		5.98	□□□□□ -1.45
UBC8	YEL012W	SPT2	P06843	333 aa	Predicted RBP	5.97	□□□□□ -1.45
UBC8	YEL012W	TRL1	P09880	827 aa	Known RBP	5.97	□□□□□ -1.45
UBC8	YEL012W	SUV3	P32580	737 aa		5.97	□□□□□ -1.45
UBC8	YEL012W	MRT4	P33201	236 aa	Known RBP	5.97	□□□□□ -1.45
UBC8	YEL012W	BOL3	P39724	118 aa		5.97	□□□□□ -1.45
UBC8	YEL012W	FBP26	P32604	452 aa		5.96	□□□□□ -1.46
UBC8	YEL012W	SLD2	P34252	453 aa		5.96	□□□□□ -1.46
UBC8	YEL012W	UGA2	P38067	497 aa		5.96	□□□□□ -1.46
UBC8	YEL012W	BRE2	P43132	505 aa		5.96	□□□□□ -1.46
UBC8	YEL012W	YFL034W	P43564	1073 aa		5.96	□□□□□ -1.46
UBC8	YEL012W	PNP1	Q05788	311 aa		5.96	□□□□□ -1.46
UBC8	YEL012W	SRS2	P12954	1174 aa		5.95	□□□□□ -1.46
UBC8	YEL012W	NTH2	P35172	780 aa		5.95	□□□□□ -1.46
UBC8	YEL012W	GCR2	Q01722	534 aa		5.95	□□□□□ -1.46
UBC8	YEL012W	ISU1	Q03020	165 aa		5.95	□□□□□ -1.46
UBC8	YEL012W	KAR5	Q04746	504 aa		5.95	□□□□□ -1.46
UBC8	YEL012W	YIL177C	P40434	1758 aa		5.95	□□□□□ -1.46
UBC8	YEL012W	YJL225C	P40889	1758 aa		5.95	□□□□□ -1.46
UBC8	YEL012W	SWI5	P08153	709 aa		5.94	□□□□□ -1.46
UBC8	YEL012W	RPS6A	P0CX37	236 aa	Known RBP	5.94	□□□□□ -1.46
UBC8	YEL012W	RPS6B	P0CX38	236 aa	Predicted RBP	5.94	□□□□□ -1.46
UBC8	YEL012W	VAN1	P23642	535 aa		5.94	□□□□□ -1.46
UBC8	YEL012W	MKS1	P34072	584 aa		5.94	□□□□□ -1.46
UBC8	YEL012W	MDJ2	P42834	146 aa		5.94	□□□□□ -1.46
UBC8	YEL012W	PUN1	Q06991	263 aa		5.94	□□□□□ -1.46
UBC8	YEL012W	ADE6	P38972	1358 aa	Known RBP	5.93	□□□□□ -1.46

Retrieved 100 of 5,963 RNA–protein pairs in 15.7 ms