RNA–Protein interactions for RNA: YAR002W

NUP60, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP60, Length 1,620 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP60YAR002W TAF8Q03750 510 aa4.43□□□□□ -1.7
NUP60YAR002W PUS5Q06244 254 aa4.43□□□□□ -1.7
NUP60YAR002W SUB2Q07478 446 aaKnown RBP4.43□□□□□ -1.7
NUP60YAR002W DNF3Q12674 1656 aa4.43□□□□□ -1.7
NUP60YAR002W CAB1Q04430 367 aa4.43□□□□□ -1.7
NUP60YAR002W RDS2P19541 446 aaKnown RBP4.42□□□□□ -1.7
NUP60YAR002W PEP12P32854 288 aa4.42□□□□□ -1.7
NUP60YAR002W NOP2P40991 618 aaKnown RBP4.42□□□□□ -1.7
NUP60YAR002W UTP13Q05946 817 aaKnown RBP4.42□□□□□ -1.7
NUP60YAR002W NAP1P25293 417 aaKnown RBP4.41□□□□□ -1.7
NUP60YAR002W PRS1P32895 427 aaKnown RBP4.41□□□□□ -1.7
NUP60YAR002W HED1Q03937 162 aa4.41□□□□□ -1.7
NUP60YAR002W SSA1P10591 642 aaKnown RBP4.4□□□□□ -1.7
NUP60YAR002W GAR1P28007 205 aaKnown RBP4.4□□□□□ -1.7
NUP60YAR002W SOH1P38633 127 aa4.4□□□□□ -1.7
NUP60YAR002W CHZ1P40019 153 aaPredicted RBP4.4□□□□□ -1.7
NUP60YAR002W APL6P46682 809 aa4.4□□□□□ -1.7
NUP60YAR002W KRE5P22023 1365 aa4.39□□□□□ -1.71
NUP60YAR002W TGL4P36165 910 aa4.39□□□□□ -1.71
NUP60YAR002W EMW1P42842 904 aaKnown RBP4.39□□□□□ -1.71
NUP60YAR002W CFT1Q06632 1357 aaKnown RBP4.38□□□□□ -1.71
NUP60YAR002W PUP1P25043 261 aa4.38□□□□□ -1.71
NUP60YAR002W MRT4P33201 236 aaKnown RBP4.38□□□□□ -1.71
NUP60YAR002W KTR7P40504 517 aa4.38□□□□□ -1.71
NUP60YAR002W APP1P53933 587 aa4.38□□□□□ -1.71
NUP60YAR002W ATG20Q07528 640 aa4.38□□□□□ -1.71
NUP60YAR002W RIA1P53893 1110 aa4.37□□□□□ -1.71
NUP60YAR002W MAK10Q02197 733 aa4.37□□□□□ -1.71
NUP60YAR002W ISR1Q06098 443 aaKnown RBP4.37□□□□□ -1.71
NUP60YAR002W NOB1Q08444 459 aaKnown RBP4.37□□□□□ -1.71
NUP60YAR002W YML133CQ03099 1374 aa4.37□□□□□ -1.71
NUP60YAR002W YLL067CQ07888 1374 aa4.37□□□□□ -1.71
NUP60YAR002W YLL066CQ99208 1374 aa4.37□□□□□ -1.71
NUP60YAR002W GAL2P13181 574 aa4.36□□□□□ -1.71
NUP60YAR002W GEF1P37020 779 aa4.36□□□□□ -1.71
NUP60YAR002W MKS1P34072 584 aa4.35□□□□□ -1.71
NUP60YAR002W YFL034WP43564 1073 aa4.35□□□□□ -1.71
NUP60YAR002W RPL34AP87262 121 aaPredicted RBP4.35□□□□□ -1.71
NUP60YAR002W GCR2Q01722 534 aa4.35□□□□□ -1.71
NUP60YAR002W ECM23Q02710 187 aa4.35□□□□□ -1.71
NUP60YAR002W MLP1Q02455 1875 aaKnown RBP4.35□□□□□ -1.71
NUP60YAR002W PSK1P31374 1356 aa4.35□□□□□ -1.71
NUP60YAR002W CDC4P07834 779 aa4.35□□□□□ -1.71
NUP60YAR002W HAP4P14064 554 aa4.35□□□□□ -1.71
NUP60YAR002W YEF3P16521 1044 aaKnown RBP4.35□□□□□ -1.71
NUP60YAR002W PHO87P25360 923 aa4.35□□□□□ -1.71
NUP60YAR002W FBP26P32604 452 aa4.35□□□□□ -1.71
NUP60YAR002W BRE2P43132 505 aa4.35□□□□□ -1.71
NUP60YAR002W RCM1P53972 490 aa4.35□□□□□ -1.71
NUP60YAR002W RPP2BP02400 110 aaKnown RBP4.34□□□□□ -1.71
NUP60YAR002W PPH3P32345 308 aa4.34□□□□□ -1.71
NUP60YAR002W HAL5P38970 855 aaKnown RBP4.34□□□□□ -1.71
NUP60YAR002W CLA4P48562 842 aa4.34□□□□□ -1.71
NUP60YAR002W ISU1Q03020 165 aa4.34□□□□□ -1.71
NUP60YAR002W IOC4Q04213 475 aa4.34□□□□□ -1.71
NUP60YAR002W CBC2Q08920 208 aaKnown RBP RIP-Chip data4.34□□□□□ -1.71not detected
NUP60YAR002W TSC13Q99190 310 aa4.34□□□□□ -1.71
NUP60YAR002W RPP0P05317 312 aaKnown RBP4.33□□□□□ -1.72
NUP60YAR002W MIP1P15801 1254 aa4.33□□□□□ -1.72
NUP60YAR002W YBL086CP38177 466 aa4.33□□□□□ -1.72
NUP60YAR002W YNR029CP53729 429 aaKnown RBP4.33□□□□□ -1.72
NUP60YAR002W YML083CQ04526 418 aa4.33□□□□□ -1.72
NUP60YAR002W HDA3Q06623 655 aa4.33□□□□□ -1.72
NUP60YAR002W MET32Q12041 191 aa4.33□□□□□ -1.72
NUP60YAR002W SPT2P06843 333 aaPredicted RBP4.32□□□□□ -1.72
NUP60YAR002W UBX7P38349 436 aa4.32□□□□□ -1.72
NUP60YAR002W AIM9P40053 627 aaKnown RBP4.32□□□□□ -1.72
NUP60YAR002W HST3P53687 447 aa4.32□□□□□ -1.72
NUP60YAR002W GAS4Q08271 471 aa4.32□□□□□ -1.72
NUP60YAR002W TY1B-NL2Q99337 1749 aaKnown RBP4.32□□□□□ -1.72
NUP60YAR002W STE6P12866 1290 aa4.32□□□□□ -1.72
NUP60YAR002W PDI1P17967 522 aaKnown RBP4.32□□□□□ -1.72
NUP60YAR002W AFT1P22149 690 aa4.32□□□□□ -1.72
NUP60YAR002W UTR2P32623 467 aa4.32□□□□□ -1.72
NUP60YAR002W VPS27P40343 622 aaKnown RBP4.32□□□□□ -1.72
NUP60YAR002W AIR1P40507 360 aaKnown RBP4.32□□□□□ -1.72
NUP60YAR002W ACS2P52910 683 aaKnown RBP4.32□□□□□ -1.72
NUP60YAR002W DFG5Q05031 458 aa4.32□□□□□ -1.72
NUP60YAR002W CDC45Q08032 650 aa4.32□□□□□ -1.72
NUP60YAR002W BDS1Q08347 646 aa4.32□□□□□ -1.72
NUP60YAR002W LEU2P04173 364 aaPredicted RBP4.31□□□□□ -1.72
NUP60YAR002W DAT1P13483 248 aaKnown RBP4.31□□□□□ -1.72
NUP60YAR002W ASH1P34233 588 aa4.31□□□□□ -1.72
NUP60YAR002W TBS1P38114 1094 aa4.31□□□□□ -1.72
NUP60YAR002W YDL144CQ07589 356 aa4.31□□□□□ -1.72
NUP60YAR002W KAR2P16474 682 aaKnown RBP4.3□□□□□ -1.72
NUP60YAR002W UGA3P26370 528 aa4.3□□□□□ -1.72
NUP60YAR002W NTH2P35172 780 aa4.3□□□□□ -1.72
NUP60YAR002W MTR4P47047 1073 aaKnown RBP4.3□□□□□ -1.72
NUP60YAR002W MSB3P48566 633 aaPredicted RBP4.3□□□□□ -1.72
NUP60YAR002W TAP42Q04372 366 aa4.3□□□□□ -1.72
NUP60YAR002W PUF6Q04373 656 aaKnown RBP4.3□□□□□ -1.72
NUP60YAR002W SNF2P22082 1703 aa4.3□□□□□ -1.72
NUP60YAR002W VAN1P23642 535 aa4.29□□□□□ -1.72
NUP60YAR002W ROM1P53046 1155 aa4.29□□□□□ -1.72
NUP60YAR002W RRP46P53256 223 aaPredicted RBP4.29□□□□□ -1.72
NUP60YAR002W WTM2Q12206 467 aa4.29□□□□□ -1.72
NUP60YAR002W RVB2Q12464 471 aaKnown RBP4.29□□□□□ -1.72
NUP60YAR002W ADE6P38972 1358 aaKnown RBP4.29□□□□□ -1.72
NUP60YAR002W AUS1Q08409 1394 aa4.29□□□□□ -1.72
Retrieved 100 of 5,963 RNA–protein pairs in 13.5 ms