RNA–Protein interactions for RNA: YDR288W

NSE3, Transcript of Component of the SMC5-SMC6 complex, yeast

Gene NSE3, Length 912 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NSE3	YDR288W	DNF3	Q12674	1656 aa		0.45	□□□□□ -2.34
NSE3	YDR288W	YOR093C	Q12275	1648 aa		0.45	□□□□□ -2.34
NSE3	YDR288W	FKS3	Q04952	1785 aa		0.45	□□□□□ -2.34
NSE3	YDR288W	PDR15	Q04182	1529 aa	Known RBP	0.44	□□□□□ -2.34
NSE3	YDR288W	YAL065C	O13511	128 aa		0.44	□□□□□ -2.34
NSE3	YDR288W	MRPL38	P35996	138 aa	Predicted RBP	0.44	□□□□□ -2.34
NSE3	YDR288W	YMR082C	Q04276	118 aa		0.44	□□□□□ -2.34
NSE3	YDR288W	YOR343C	Q12484	108 aa		0.44	□□□□□ -2.34
NSE3	YDR288W	YKL068W-A	Q3E826	78 aa		0.44	□□□□□ -2.34
NSE3	YDR288W	ESP1	Q03018	1630 aa		0.44	□□□□□ -2.34
NSE3	YDR288W	PEP1	P32319	1579 aa		0.44	□□□□□ -2.34
NSE3	YDR288W	POL1	P13382	1468 aa		0.43	□□□□□ -2.34
NSE3	YDR288W	MMS22	Q06164	1454 aa		0.43	□□□□□ -2.34
NSE3	YDR288W	YCR085W	P25650	117 aa		0.43	□□□□□ -2.34
NSE3	YDR288W	YDR210W	Q03482	75 aa		0.43	□□□□□ -2.34
NSE3	YDR288W	YPR145C-A	Q2V2P0	78 aa		0.43	□□□□□ -2.34
NSE3	YDR288W	YPR108W-A	Q3E7B3	70 aa		0.43	□□□□□ -2.34
NSE3	YDR288W	CDC25	P04821	1589 aa		0.43	□□□□□ -2.34
NSE3	YDR288W	RRP5	Q05022	1729 aa	Known RBP	0.43	□□□□□ -2.34
NSE3	YDR288W	HIR3	P47171	1648 aa		0.42	□□□□□ -2.34
NSE3	YDR288W	DNF2	Q12675	1612 aa		0.42	□□□□□ -2.34
NSE3	YDR288W	RPO31	P04051	1460 aa		0.42	□□□□□ -2.34
NSE3	YDR288W	YFR009W-A	P0C5M9	85 aa		0.42	□□□□□ -2.34
NSE3	YDR288W	CUP1-1	P0CX80	61 aa		0.42	□□□□□ -2.34
NSE3	YDR288W	CUP1-2	P0CX81	61 aa		0.42	□□□□□ -2.34
NSE3	YDR288W	YLR146W-A	Q2V2P1	62 aa		0.42	□□□□□ -2.34
NSE3	YDR288W	YKL065W-A	Q2V2P2	73 aa		0.42	□□□□□ -2.34
NSE3	YDR288W	YDR381C-A	Q3E6R5	114 aa		0.42	□□□□□ -2.34
NSE3	YDR288W	YMR122W-A	Q3E842	84 aa		0.42	□□□□□ -2.34
NSE3	YDR288W	NOP10	Q6Q547	58 aa	Predicted RBP	0.42	□□□□□ -2.34
NSE3	YDR288W	DYN1	P36022	4092 aa		0.42	□□□□□ -2.34
NSE3	YDR288W	DOP1	Q03921	1698 aa		0.42	□□□□□ -2.34
NSE3	YDR288W	THO2	P53552	1597 aa	Known RBP	0.41	□□□□□ -2.34
NSE3	YDR288W	PAI3	P01094	68 aa		0.41	□□□□□ -2.34
NSE3	YDR288W	QCR9	P22289	66 aa		0.41	□□□□□ -2.34
NSE3	YDR288W	YOL097W-A	Q3E7Y9	61 aa		0.41	□□□□□ -2.34
NSE3	YDR288W	XRN1	P22147	1528 aa	Known RBP	0.41	□□□□□ -2.34
NSE3	YDR288W	MMS1	Q06211	1407 aa		0.4	□□□□□ -2.34
NSE3	YDR288W	TY1B-DR4	Q07793	1604 aa		0.4	□□□□□ -2.35
NSE3	YDR288W	YNL190W	P53872	204 aa		0.4	□□□□□ -2.35
NSE3	YDR288W	POC4	Q12245	148 aa	Predicted RBP	0.4	□□□□□ -2.35
NSE3	YDR288W	YOR314W	Q12506	109 aa		0.4	□□□□□ -2.35
NSE3	YDR288W	YIL156W-B	Q2V2P4	73 aa		0.4	□□□□□ -2.35
NSE3	YDR288W	YHR213W-A	Q8TGT4	77 aa		0.4	□□□□□ -2.35
NSE3	YDR288W	IML1	P47170	1584 aa		0.4	□□□□□ -2.35
NSE3	YDR288W	SPO14	P36126	1683 aa		0.4	□□□□□ -2.35
NSE3	YDR288W	SSS1	P35179	80 aa		0.39	□□□□□ -2.35
NSE3	YDR288W	YBR032W	P38223	100 aa		0.39	□□□□□ -2.35
NSE3	YDR288W	PAU7	P39545	55 aa		0.39	□□□□□ -2.35
NSE3	YDR288W	SWM2	P40342	146 aa		0.39	□□□□□ -2.35
NSE3	YDR288W	OLI1	P61829	76 aa		0.39	□□□□□ -2.35
NSE3	YDR288W	YMR175W-A	Q3E766	64 aa		0.39	□□□□□ -2.35
NSE3	YDR288W	YSP2	Q06681	1438 aa		0.38	□□□□□ -2.35
NSE3	YDR288W	RPO21	P04050	1733 aa	Known RBP	0.38	□□□□□ -2.35
NSE3	YDR288W	SSK2	P53599	1579 aa		0.38	□□□□□ -2.35
NSE3	YDR288W	TIM12	P32830	109 aa		0.38	□□□□□ -2.35
NSE3	YDR288W	SIP18	P50263	79 aa		0.38	□□□□□ -2.35
NSE3	YDR288W	YKL018C-A	Q3E7A7	99 aa		0.38	□□□□□ -2.35
NSE3	YDR288W	YCF1	P39109	1515 aa	Known RBP	0.38	□□□□□ -2.35
NSE3	YDR288W	SMC4	Q12267	1418 aa		0.38	□□□□□ -2.35
NSE3	YDR288W	UFD4	P33202	1483 aa		0.37	□□□□□ -2.35
NSE3	YDR288W	NUP159	P40477	1460 aa		0.37	□□□□□ -2.35
NSE3	YDR288W	ATP17	Q06405	101 aa		0.37	□□□□□ -2.35
NSE3	YDR288W	HUB1	Q6Q546	73 aa		0.37	□□□□□ -2.35
NSE3	YDR288W	USO1	P25386	1790 aa		0.37	□□□□□ -2.35
NSE3	YDR288W	EDC1	P53080	175 aa	Predicted RBP	0.36	□□□□□ -2.35
NSE3	YDR288W	YGR121W-A	Q3E816	71 aa		0.36	□□□□□ -2.35
NSE3	YDR288W	YOR032W-A	Q8TGS1	66 aa		0.36	□□□□□ -2.35
NSE3	YDR288W	HAP1	P0CE41	1502 aa		0.36	□□□□□ -2.35
NSE3	YDR288W	TCB3	Q03640	1545 aa	Known RBP	0.36	□□□□□ -2.35
NSE3	YDR288W	SCC2	Q04002	1493 aa		0.35	□□□□□ -2.35
NSE3	YDR288W	IQG1	Q12280	1495 aa		0.35	□□□□□ -2.35
NSE3	YDR288W	TY3B-G	Q99315	1547 aa		0.35	□□□□□ -2.35
NSE3	YDR288W	YDL022C-A	P0C5L6	82 aa		0.35	□□□□□ -2.35
NSE3	YDR288W	YBR016W	P38216	128 aa		0.35	□□□□□ -2.35
NSE3	YDR288W	YDR119W-A	Q2V2P9	66 aa		0.35	□□□□□ -2.35
NSE3	YDR288W	YFL041W-A	Q3E817	63 aa		0.35	□□□□□ -2.35
NSE3	YDR288W	ARO1	P08566	1588 aa	Known RBP	0.35	□□□□□ -2.35
NSE3	YDR288W	MYO4	P32492	1471 aa		0.35	□□□□□ -2.35
NSE3	YDR288W	YBL039W-B	P0C268	59 aa		0.34	□□□□□ -2.36
NSE3	YDR288W	YSY6	P38374	65 aa		0.34	□□□□□ -2.36
NSE3	YDR288W	YOL131W	Q08270	108 aa		0.34	□□□□□ -2.36
NSE3	YDR288W	RKR1	Q04781	1562 aa		0.33	□□□□□ -2.36
NSE3	YDR288W	ERI1	P62651	68 aa	Known RBP	0.33	□□□□□ -2.36
NSE3	YDR288W	YIL102C-A	Q2V2P5	75 aa		0.33	□□□□□ -2.36
NSE3	YDR288W	YDR246W-A	Q3E763	66 aa		0.33	□□□□□ -2.36
NSE3	YDR288W	YOR008C-A	Q3E7B9	74 aa		0.33	□□□□□ -2.36
NSE3	YDR288W	YGR035W-A	Q45U48	73 aa		0.33	□□□□□ -2.36
NSE3	YDR288W	YMR001C-A	Q8TGS9	76 aa		0.33	□□□□□ -2.36
NSE3	YDR288W	CHC1	P22137	1653 aa	Known RBP	0.33	□□□□□ -2.36
NSE3	YDR288W	VMR1	P38735	1592 aa		0.32	□□□□□ -2.36
NSE3	YDR288W	RPS30A	P0CX33	63 aa	Known RBP	0.32	□□□□□ -2.36
NSE3	YDR288W	RPS30B	P0CX34	63 aa	Known RBP	0.32	□□□□□ -2.36
NSE3	YDR288W	YGR025W	P53216	100 aa		0.32	□□□□□ -2.36
NSE3	YDR288W	YCR108C	Q3E819	63 aa		0.32	□□□□□ -2.36
NSE3	YDR288W	VPS15	P22219	1454 aa		0.32	□□□□□ -2.36
NSE3	YDR288W	BCK1	Q01389	1478 aa		0.32	□□□□□ -2.36
NSE3	YDR288W	YLR157W-D	P0CE99	70 aa		0.31	□□□□□ -2.36
NSE3	YDR288W	YBL044W	P38194	122 aa		0.31	□□□□□ -2.36
NSE3	YDR288W	SPI1	P40092	148 aa		0.31	□□□□□ -2.36

Retrieved 100 of 5,963 RNA–protein pairs in 8.1 ms