RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 NXF3Q9H4D5 531 aaKnown RBP11.3□□□□□ -0.6
CLIP1-210ENST00000538120 ZFYVE28Q9HCC9 887 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 RASAL2Q9UJF2 1139 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 PTPN22Q9Y2R2 807 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 CEP83Q9Y592 693 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 NME7Q9Y5B8 376 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 SMIM23A6NLE4 172 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 SIGLEC16A6NMB1 481 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 TNPO2O14787 897 aaKnown RBP11.3□□□□□ -0.6
CLIP1-210ENST00000538120 TAP1Q03518 808 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 ADCY2Q08462 1091 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 IFFO1Q0D2I5 559 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 SNX1Q13596 522 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 PCBP1Q15365 356 aaKnown RBP eCLIP11.3□□□□□ -0.6
CLIP1-210ENST00000538120 FSCN1Q16658 493 aaKnown RBP11.3□□□□□ -0.6
CLIP1-210ENST00000538120 LRRC38Q5VT99 294 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 DCUN1D2Q6PH85 259 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 CPLX4Q7Z7G2 160 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 CEP57Q86XR8 500 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 XYLT1Q86Y38 959 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 FBXO25Q8TCJ0 367 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 HEXIM2Q96MH2 286 aaKnown RBP11.3□□□□□ -0.6
CLIP1-210ENST00000538120 PASKQ96RG2 1323 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 OSBPL8Q9BZF1 889 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 KLHL11Q9NVR0 708 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 CNTN3Q9P232 1028 aa11.3□□□□□ -0.6
CLIP1-210ENST00000538120 TPX2Q9ULW0 747 aaKnown RBP11.3□□□□□ -0.6
CLIP1-210ENST00000538120 C3orf80F5H4A9 247 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 PI4K2BG5E9Z4 385 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 GOLGA8SH3BPF8 625 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 TP73O15350 636 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 AKAP5P24588 427 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 GJC1P36383 396 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 SSR1P43307 286 aaKnown RBP11.29□□□□□ -0.6
CLIP1-210ENST00000538120 GABRB2P47870 512 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 APLP1P51693 650 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 CDR1P51861 262 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 PLTPP55058 493 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 PSMC1P62191 440 aaKnown RBP11.29□□□□□ -0.6
CLIP1-210ENST00000538120 MTMR3Q13615 1198 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 PARP9Q8IXQ6 854 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 MAIP1Q8WWC4 291 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 CCT6BQ92526 530 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 TSPAN18Q96SJ8 248 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 FMO2Q99518 471 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 SPOCK3Q9BQ16 436 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 MRPL45Q9BRJ2 306 aaKnown RBP11.29□□□□□ -0.6
CLIP1-210ENST00000538120 ACTR5Q9H9F9 607 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-210ENST00000538120 STRIP2Q9ULQ0 834 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 KAT6AQ92794 2004 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 TLDC2A0PJX2 215 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 C17orf102A2RUQ5 167 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 RECQL4O94761 1208 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 ECEL1O95672 775 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 HMGCRP04035 888 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 PFKMP08237 780 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 AXLP30530 894 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 RDXP35241 583 aaKnown RBP11.29□□□□□ -0.6
CLIP1-210ENST00000538120 NFX1Q12986 1120 aaKnown RBP11.29□□□□□ -0.6
CLIP1-210ENST00000538120 PIGHQ14442 188 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-210ENST00000538120 SETDB1Q15047 1291 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 E2F5Q15329 346 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 GLRA4Q5JXX5 417 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 GKAP1Q5VSY0 366 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-210ENST00000538120 MFSD7Q6UXD7 560 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 CCDC50Q8IVM0 306 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 RCOR2Q8IZ40 523 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 UHMK1Q8TAS1 419 aaKnown RBP11.29□□□□□ -0.6
CLIP1-210ENST00000538120 UBA3Q8TBC4 463 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 ART4Q93070 314 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 TLCD1Q96CP7 247 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 SLITRK1Q96PX8 696 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 FAM124BQ9H5Z6 455 aaPredicted RBP11.29□□□□□ -0.6
CLIP1-210ENST00000538120 NEU2Q9Y3R4 380 aa11.29□□□□□ -0.6
CLIP1-210ENST00000538120 M0QYV0 167 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 KRT3P12035 628 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 CHN1P15882 459 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 IVDP26440 423 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 CRYBB1P53674 252 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-210ENST00000538120 SATB1Q01826 763 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 ZNF268Q14587 947 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-210ENST00000538120 SNCBQ16143 134 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 PREPLQ4J6C6 727 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-210ENST00000538120 XKR4Q5GH76 650 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 ERMARDQ5T6L9 678 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 C9orf57Q5W0N0 161 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 LCLAT1Q6UWP7 414 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 C12orf29Q8N999 325 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 MCRS1Q96EZ8 462 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 XPO6Q96QU8 1125 aaKnown RBP11.28□□□□□ -0.6
CLIP1-210ENST00000538120 ARHGAP39Q9C0H5 1083 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 MCM8Q9UJA3 840 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 PIN4Q9Y237 131 aaKnown RBP11.28□□□□□ -0.6
CLIP1-210ENST00000538120 TLL2Q9Y6L7 1015 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 KRT10P13645 584 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 AKR1A1P14550 325 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 YARSP54577 528 aaKnown RBP11.28□□□□□ -0.6
CLIP1-210ENST00000538120 IFI35P80217 286 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-210ENST00000538120 KRT17Q04695 432 aa11.28□□□□□ -0.6
CLIP1-210ENST00000538120 MYO1EQ12965 1108 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms