RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeastyeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF4YKR036C YDR102CQ03864 110 aa3.95□□□□□ -1.78
CAF4YKR036C YHP1Q04116 353 aa3.95□□□□□ -1.78
CAF4YKR036C YMR103CQ04436 120 aa3.95□□□□□ -1.78
CAF4YKR036C YOR097CQ12274 175 aaPredicted RBP3.95□□□□□ -1.78
CAF4YKR036C HSP12P22943 109 aaKnown RBP3.95□□□□□ -1.78
CAF4YKR036C ROX3P25046 220 aa3.95□□□□□ -1.78
CAF4YKR036C IMP1P28627 190 aa3.95□□□□□ -1.78
CAF4YKR036C PAU7P39545 55 aa3.95□□□□□ -1.78
CAF4YKR036C YFR057WP43625 151 aa3.95□□□□□ -1.78
CAF4YKR036C ABF2Q02486 183 aa3.95□□□□□ -1.78
CAF4YKR036C FCF1Q05498 189 aaPredicted RBP3.95□□□□□ -1.78
CAF4YKR036C RRG8Q06109 277 aa3.95□□□□□ -1.78
CAF4YKR036C YGL258W-AQ3E740 77 aa3.95□□□□□ -1.78
CAF4YKR036C TOM40P23644 387 aaKnown RBP3.94□□□□□ -1.78
CAF4YKR036C REC104P33323 182 aa3.94□□□□□ -1.78
CAF4YKR036C YER079WP40052 210 aaKnown RBP3.94□□□□□ -1.78
CAF4YKR036C HST4P53688 370 aa3.94□□□□□ -1.78
CAF4YKR036C LSM6Q06406 86 aaKnown RBP3.94□□□□□ -1.78
CAF4YKR036C YLR112WQ12130 139 aa3.94□□□□□ -1.78
CAF4YKR036C COX17Q12287 69 aa3.94□□□□□ -1.78
CAF4YKR036C ECM12O13529 151 aa3.93□□□□□ -1.78
CAF4YKR036C Q0255P03881 472 aa3.93□□□□□ -1.78
CAF4YKR036C PIS1P06197 220 aaKnown RBP3.93□□□□□ -1.78
CAF4YKR036C YSF3P0C074 85 aaPredicted RBP3.93□□□□□ -1.78
CAF4YKR036C ARF1P11076 181 aaKnown RBP3.93□□□□□ -1.78
CAF4YKR036C HSP150P32478 413 aa3.93□□□□□ -1.78
CAF4YKR036C AIM34Q03673 198 aa3.93□□□□□ -1.78
CAF4YKR036C YMR254CQ04838 102 aa3.93□□□□□ -1.78
CAF4YKR036C UTP20P35194 2493 aaKnown RBP3.93□□□□□ -1.78
CAF4YKR036C VPS63O13549 108 aa3.93□□□□□ -1.78
CAF4YKR036C YDL022C-AP0C5L6 82 aa3.93□□□□□ -1.78
CAF4YKR036C FPR2P32472 135 aa3.93□□□□□ -1.78
CAF4YKR036C YKR032WP36127 104 aa3.93□□□□□ -1.78
CAF4YKR036C NRG2P38082 220 aa3.93□□□□□ -1.78
CAF4YKR036C GPI18P38211 433 aa3.93□□□□□ -1.78
CAF4YKR036C ERG28P40030 148 aa3.93□□□□□ -1.78
CAF4YKR036C ECO1P43605 281 aa3.93□□□□□ -1.78
CAF4YKR036C LCB3P47013 409 aa3.93□□□□□ -1.78
CAF4YKR036C MIX14Q04341 121 aa3.93□□□□□ -1.78
CAF4YKR036C RDL2Q08742 149 aaKnown RBP3.93□□□□□ -1.78
CAF4YKR036C YMR31P19955 123 aa3.92□□□□□ -1.78
CAF4YKR036C YHR140WP38842 239 aa3.92□□□□□ -1.78
CAF4YKR036C MRPL49P40858 161 aaPredicted RBP3.92□□□□□ -1.78
CAF4YKR036C VPS55P47111 140 aa3.92□□□□□ -1.78
CAF4YKR036C UBC13P52490 153 aa3.92□□□□□ -1.78
CAF4YKR036C YCL021W-AQ96VH3 125 aa3.92□□□□□ -1.78
CAF4YKR036C YAL064W-BO13512 126 aa3.91□□□□□ -1.78
CAF4YKR036C OST1P41543 476 aaKnown RBP3.91□□□□□ -1.78
CAF4YKR036C FIP1P45976 327 aa3.91□□□□□ -1.78
CAF4YKR036C KNH1P50112 268 aa3.91□□□□□ -1.78
CAF4YKR036C UBC11P52492 156 aa3.91□□□□□ -1.78
CAF4YKR036C SKI6P46948 246 aaPredicted RBP3.91□□□□□ -1.78
CAF4YKR036C NCA3P46955 337 aa3.91□□□□□ -1.78
CAF4YKR036C CAX4P53223 239 aa3.91□□□□□ -1.78
CAF4YKR036C YPL261CQ08976 102 aa3.91□□□□□ -1.78
CAF4YKR036C YDR029WQ12111 104 aa3.91□□□□□ -1.78
CAF4YKR036C NCE102Q12207 173 aaRIP-Chip data3.91□□□□□ -1.78not detected
CAF4YKR036C CDC39P25655 2108 aaKnown RBP3.91□□□□□ -1.78
CAF4YKR036C GLT1Q12680 2145 aaKnown RBP3.9□□□□□ -1.78
CAF4YKR036C YHR139C-AO13536 103 aa3.9□□□□□ -1.78
CAF4YKR036C MGR2Q02889 113 aa3.9□□□□□ -1.78
CAF4YKR036C COF1Q03048 143 aaKnown RBP3.9□□□□□ -1.78
CAF4YKR036C YMR317WQ04893 1140 aa3.9□□□□□ -1.78
CAF4YKR036C UPS1Q05776 175 aa3.9□□□□□ -1.78
CAF4YKR036C NIP7Q08962 181 aaKnown RBP3.9□□□□□ -1.78
CAF4YKR036C MET32Q12041 191 aa3.9□□□□□ -1.78
CAF4YKR036C YKL070WP36087 169 aa3.89□□□□□ -1.79
CAF4YKR036C SMP1P38128 452 aa3.89□□□□□ -1.79
CAF4YKR036C DSE2P38844 325 aa3.89□□□□□ -1.79
CAF4YKR036C SGN1P40561 250 aaKnown RBP RIP-Chip data3.89□□□□□ -1.79not detected
CAF4YKR036C SBH1P52870 82 aa3.89□□□□□ -1.79
CAF4YKR036C ALG13P53178 202 aa3.89□□□□□ -1.79
CAF4YKR036C PCP1P53259 346 aa3.89□□□□□ -1.79
CAF4YKR036C MOT3P54785 490 aaKnown RBP3.89□□□□□ -1.79
CAF4YKR036C AQY1P0CD91 305 aa3.89□□□□□ -1.79
CAF4YKR036C RPS8AP0CX39 200 aaKnown RBP3.89□□□□□ -1.79
CAF4YKR036C RPS8BP0CX40 200 aaKnown RBP3.89□□□□□ -1.79
CAF4YKR036C VTC1P40046 129 aaRIP-Chip data3.89□□□□□ -1.79not detected
CAF4YKR036C YNL217WP40152 326 aa3.89□□□□□ -1.79
CAF4YKR036C YFL051CP43552 160 aa3.89□□□□□ -1.79
CAF4YKR036C DAD4P69851 72 aa3.89□□□□□ -1.79
CAF4YKR036C TIM22Q12328 207 aa3.89□□□□□ -1.79
CAF4YKR036C YHL042WP38729 150 aa3.88□□□□□ -1.79
CAF4YKR036C YIL029CP40538 142 aa3.88□□□□□ -1.79
CAF4YKR036C RXT3Q07458 294 aa3.88□□□□□ -1.79
CAF4YKR036C HNT3Q08702 217 aa3.88□□□□□ -1.79
CAF4YKR036C PFY1P07274 126 aa3.87□□□□□ -1.79
CAF4YKR036C PCL2P25693 308 aa3.87□□□□□ -1.79
CAF4YKR036C AGA1P32323 725 aa3.87□□□□□ -1.79
CAF4YKR036C TOM6P33448 61 aa3.87□□□□□ -1.79
CAF4YKR036C RPL32P38061 130 aaKnown RBP3.87□□□□□ -1.79
CAF4YKR036C YMR141CP40211 102 aa3.87□□□□□ -1.79
CAF4YKR036C YIA6P40556 373 aa3.87□□□□□ -1.79
CAF4YKR036C PGU1P47180 361 aa3.87□□□□□ -1.79
CAF4YKR036C MST27P53176 234 aa3.87□□□□□ -1.79
CAF4YKR036C HSK3P69852 69 aa3.87□□□□□ -1.79
CAF4YKR036C COA3Q3E7B2 85 aa3.87□□□□□ -1.79
CAF4YKR036C YPL038W-AQ3E7B4 63 aa3.87□□□□□ -1.79
CAF4YKR036C YPR053CQ6Q5F3 151 aa3.87□□□□□ -1.79
CAF4YKR036C IGO2Q9P305 131 aa3.87□□□□□ -1.79
Retrieved 100 of 5,963 RNA–protein pairs in 13.4 ms