RNA–Protein interactions for RNA: YLR268W

SEC22, Transcript of R-SNARE protein, yeast

Gene SEC22, Length 645 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC22	YLR268W	YGL041W-A	P0C5N3	154 aa		0.7	□□□□□ -2.3
SEC22	YLR268W	MRS4	P23500	304 aa		0.7	□□□□□ -2.3
SEC22	YLR268W	RME1	P32338	300 aa	Known RBP	0.7	□□□□□ -2.3
SEC22	YLR268W	DER1	P38307	211 aa		0.7	□□□□□ -2.3
SEC22	YLR268W	RCF2	P53721	224 aa		0.7	□□□□□ -2.3
SEC22	YLR268W	NSL1	Q12143	216 aa		0.7	□□□□□ -2.3
SEC22	YLR268W	EFG1	Q3E705	233 aa	Known RBP	0.7	□□□□□ -2.3
SEC22	YLR268W	CMC4	Q3E7A9	73 aa		0.7	□□□□□ -2.3
SEC22	YLR268W	RPS28A	Q3E7X9	67 aa	Predicted RBP	0.7	□□□□□ -2.3
SEC22	YLR268W	RIF1	P29539	1916 aa		0.7	□□□□□ -2.3
SEC22	YLR268W	YOL013W-A	P0C272	63 aa	Predicted RBP	0.69	□□□□□ -2.3
SEC22	YLR268W	PHO13	P19881	312 aa		0.69	□□□□□ -2.3
SEC22	YLR268W	HYP2	P23301	157 aa	Known RBP	0.69	□□□□□ -2.3
SEC22	YLR268W	YBR027C	P38220	110 aa		0.69	□□□□□ -2.3
SEC22	YLR268W	YER181C	P40097	107 aa		0.69	□□□□□ -2.3
SEC22	YLR268W	FMN1	Q03778	218 aa		0.69	□□□□□ -2.3
SEC22	YLR268W	YCR001W	P25347	104 aa		0.68	□□□□□ -2.3
SEC22	YLR268W	SRP21	P32342	167 aa		0.68	□□□□□ -2.3
SEC22	YLR268W	HSP150	P32478	413 aa		0.68	□□□□□ -2.3
SEC22	YLR268W	ATP19	P81451	68 aa		0.68	□□□□□ -2.3
SEC22	YLR268W	RRT7	Q07829	113 aa		0.68	□□□□□ -2.3
SEC22	YLR268W	MRPL24	P36525	258 aa	Predicted RBP	0.67	□□□□□ -2.3
SEC22	YLR268W	FIG1	P38224	298 aa		0.67	□□□□□ -2.3
SEC22	YLR268W	IPT1	P38954	527 aa		0.67	□□□□□ -2.3
SEC22	YLR268W	YJL218W	P40892	196 aa	Known RBP	0.67	□□□□□ -2.3
SEC22	YLR268W	IRC19	Q07843	230 aa		0.67	□□□□□ -2.3
SEC22	YLR268W	RFU1	Q08003	200 aa		0.67	□□□□□ -2.3
SEC22	YLR268W	NUM1	Q00402	2748 aa		0.66	□□□□□ -2.3
SEC22	YLR268W	HSL1	P34244	1518 aa		0.66	□□□□□ -2.3
SEC22	YLR268W	ATG8	P38182	117 aa	RIP-Chip data	0.66	□□□□□ -2.3	not detected
SEC22	YLR268W	YPR153W	Q06537	140 aa		0.66	□□□□□ -2.3
SEC22	YLR268W	PET20	Q99373	253 aa		0.66	□□□□□ -2.3
SEC22	YLR268W	PRP8	P33334	2413 aa	Known RBP	0.65	□□□□□ -2.31
SEC22	YLR268W	HAP2	P06774	265 aa		0.65	□□□□□ -2.31
SEC22	YLR268W	DDR48	P18899	430 aa	Known RBP	0.65	□□□□□ -2.31
SEC22	YLR268W	SED1	Q01589	338 aa		0.65	□□□□□ -2.31
SEC22	YLR268W	GPI11	Q06636	219 aa		0.65	□□□□□ -2.31
SEC22	YLR268W	YOR072W	Q08486	104 aa		0.65	□□□□□ -2.31
SEC22	YLR268W	SCS22	Q6Q595	175 aa		0.65	□□□□□ -2.31
SEC22	YLR268W	YHR213W-B	Q8TGK1	99 aa		0.65	□□□□□ -2.31
SEC22	YLR268W	YNL122C	P53921	115 aa	Predicted RBP	0.64	□□□□□ -2.31
SEC22	YLR268W	RPL33A	P05744	107 aa	Known RBP	0.63	□□□□□ -2.31
SEC22	YLR268W	NHP6A	P11632	93 aa	Known RBP	0.63	□□□□□ -2.31
SEC22	YLR268W	HSP12	P22943	109 aa	Known RBP	0.63	□□□□□ -2.31
SEC22	YLR268W	HHY1	P39982	102 aa		0.63	□□□□□ -2.31
SEC22	YLR268W	GPI2	P46961	280 aa		0.63	□□□□□ -2.31
SEC22	YLR268W	EST3	Q03096	181 aa		0.63	□□□□□ -2.31
SEC22	YLR268W	SEN15	Q04675	128 aa		0.63	□□□□□ -2.31
SEC22	YLR268W	SMD2	Q06217	110 aa	Known RBP	0.63	□□□□□ -2.31
SEC22	YLR268W	RIB3	Q99258	208 aa		0.63	□□□□□ -2.31
SEC22	YLR268W	ROM2	P51862	1356 aa	Known RBP	0.62	□□□□□ -2.31
SEC22	YLR268W	RPS22A	P0C0W1	130 aa	Known RBP	0.62	□□□□□ -2.31
SEC22	YLR268W	ARC19	P33204	171 aa	Known RBP	0.62	□□□□□ -2.31
SEC22	YLR268W	VMA10	P48836	114 aa	Known RBP	0.62	□□□□□ -2.31
SEC22	YLR268W	MGR2	Q02889	113 aa		0.62	□□□□□ -2.31
SEC22	YLR268W	RAV2	Q03956	351 aa		0.62	□□□□□ -2.31
SEC22	YLR268W	RPS22B	Q3E7Y3	130 aa	Known RBP	0.62	□□□□□ -2.31
SEC22	YLR268W	COX5B	P00425	151 aa		0.61	□□□□□ -2.31
SEC22	YLR268W	PKR1	Q03880	122 aa	Known RBP	0.61	□□□□□ -2.31
SEC22	YLR268W	HUT1	Q12520	339 aa		0.61	□□□□□ -2.31
SEC22	YLR268W	YOR1	P53049	1477 aa		0.61	□□□□□ -2.31
SEC22	YLR268W	MDN1	Q12019	4910 aa	Known RBP	0.6	□□□□□ -2.31
SEC22	YLR268W	FYV5	P25585	152 aa		0.6	□□□□□ -2.31
SEC22	YLR268W	SRL3	P36167	246 aa		0.6	□□□□□ -2.31
SEC22	YLR268W	IPI1	P38803	334 aa	Predicted RBP	0.6	□□□□□ -2.31
SEC22	YLR268W	YJL009W	P47078	108 aa		0.6	□□□□□ -2.31
SEC22	YLR268W	DIE2	P50076	525 aa		0.6	□□□□□ -2.31
SEC22	YLR268W	MHF1	Q3E835	90 aa		0.6	□□□□□ -2.31
SEC22	YLR268W	CDC39	P25655	2108 aa	Known RBP	0.59	□□□□□ -2.31
SEC22	YLR268W	UBR1	P19812	1950 aa		0.59	□□□□□ -2.31
SEC22	YLR268W	YGL014C-A	P0C5N1	53 aa		0.59	□□□□□ -2.31
SEC22	YLR268W	PET54	P10834	293 aa		0.59	□□□□□ -2.31
SEC22	YLR268W	SUI1	P32911	108 aa	Known RBP	0.59	□□□□□ -2.31
SEC22	YLR268W	YGR201C	P42936	225 aa		0.59	□□□□□ -2.31
SEC22	YLR268W	MOG1	P47123	218 aa		0.59	□□□□□ -2.31
SEC22	YLR268W	YCL001W-A	P87012	153 aa		0.59	□□□□□ -2.31
SEC22	YLR268W	IRC21	Q04772	201 aa		0.59	□□□□□ -2.31
SEC22	YLR268W	RPS1B	P23248	255 aa	Known RBP	0.58	□□□□□ -2.32
SEC22	YLR268W	EFM5	P53200	248 aa	Known RBP	0.58	□□□□□ -2.32
SEC22	YLR268W	QCR6	P00127	147 aa		0.57	□□□□□ -2.32
SEC22	YLR268W	YMR141C	P40211	102 aa		0.57	□□□□□ -2.32
SEC22	YLR268W	PHB1	P40961	287 aa		0.57	□□□□□ -2.32
SEC22	YLR268W	LSM1	P47017	172 aa	Known RBP	0.57	□□□□□ -2.32
SEC22	YLR268W	YMR122C	Q03879	124 aa		0.57	□□□□□ -2.32
SEC22	YLR268W	SOM1	Q05676	74 aa		0.57	□□□□□ -2.32
SEC22	YLR268W	RAF1	Q06891	181 aa		0.57	□□□□□ -2.32
SEC22	YLR268W	KTI11	Q3E840	82 aa		0.57	□□□□□ -2.32
SEC22	YLR268W	LSM8	P47093	109 aa	Known RBP	0.56	□□□□□ -2.32
SEC22	YLR268W	YNL019C	P53975	284 aa		0.56	□□□□□ -2.32
SEC22	YLR268W	YDR366C	P87287	132 aa		0.56	□□□□□ -2.32
SEC22	YLR268W	NAT5	Q08689	176 aa		0.56	□□□□□ -2.32
SEC22	YLR268W	PRM3	Q08931	133 aa		0.56	□□□□□ -2.32
SEC22	YLR268W	DDP1	Q99321	188 aa	Known RBP	0.56	□□□□□ -2.32
SEC22	YLR268W	RPL43A	P0CX25	92 aa	Known RBP	0.55	□□□□□ -2.32
SEC22	YLR268W	RPL43B	P0CX26	92 aa		0.55	□□□□□ -2.32
SEC22	YLR268W	ANB1	P19211	157 aa		0.55	□□□□□ -2.32
SEC22	YLR268W	YHR140W	P38842	239 aa		0.55	□□□□□ -2.32
SEC22	YLR268W	SPG1	P50088	95 aa		0.55	□□□□□ -2.32
SEC22	YLR268W	HHO1	P53551	258 aa		0.55	□□□□□ -2.32
SEC22	YLR268W	YMR320W	Q04897	101 aa		0.55	□□□□□ -2.32

Retrieved 100 of 5,963 RNA–protein pairs in 52.1 ms