RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF4	YKR036C	YGL260W	P53056	76 aa		4.09	□□□□□ -1.75
CAF4	YKR036C	YNR071C	P53757	342 aa		4.09	□□□□□ -1.75
CAF4	YKR036C	POP3	P53833	195 aa	Predicted RBP	4.09	□□□□□ -1.75
CAF4	YKR036C	MEC1	P38111	2368 aa		4.09	□□□□□ -1.75
CAF4	YKR036C	RPL7A	P05737	244 aa	Known RBP	4.09	□□□□□ -1.76
CAF4	YKR036C	MSN1	P22148	382 aa		4.09	□□□□□ -1.76
CAF4	YKR036C	GAR1	P28007	205 aa	Known RBP	4.09	□□□□□ -1.76
CAF4	YKR036C	TOA2	P32774	122 aa		4.09	□□□□□ -1.76
CAF4	YKR036C	RPB7	P34087	171 aa		4.09	□□□□□ -1.76
CAF4	YKR036C	SAS2	P40963	338 aa		4.09	□□□□□ -1.76
CAF4	YKR036C	ARP3	P47117	449 aa	Known RBP	4.09	□□□□□ -1.76
CAF4	YKR036C	DUO1	P53168	247 aa	Known RBP	4.09	□□□□□ -1.76
CAF4	YKR036C	CUZ1	P53899	274 aa		4.09	□□□□□ -1.76
CAF4	YKR036C	CRZ1	P53968	678 aa		4.09	□□□□□ -1.76
CAF4	YKR036C	YMR210W	Q03649	449 aa		4.09	□□□□□ -1.76
CAF4	YKR036C	VAR1	P02381	398 aa		4.08	□□□□□ -1.76
CAF4	YKR036C	CDC26	P14724	124 aa		4.08	□□□□□ -1.76
CAF4	YKR036C	REC114	P32841	428 aa		4.08	□□□□□ -1.76
CAF4	YKR036C	YGP1	P38616	354 aa	Known RBP	4.08	□□□□□ -1.76
CAF4	YKR036C	SNF11	P38956	169 aa		4.08	□□□□□ -1.76
CAF4	YKR036C	SEC72	P39742	193 aa	Known RBP	4.08	□□□□□ -1.76
CAF4	YKR036C	YIP5	P53108	310 aa		4.08	□□□□□ -1.76
CAF4	YKR036C	TPC1	P53257	314 aa		4.08	□□□□□ -1.76
CAF4	YKR036C	SDH7	Q04401	133 aa		4.08	□□□□□ -1.76
CAF4	YKR036C	PAM18	Q07914	168 aa		4.08	□□□□□ -1.76
CAF4	YKR036C	XYL2	Q07993	356 aa		4.08	□□□□□ -1.76
CAF4	YKR036C	DGA1	Q08650	418 aa		4.08	□□□□□ -1.76
CAF4	YKR036C	AYT1	Q12226	474 aa		4.08	□□□□□ -1.76
CAF4	YKR036C	JID1	Q12350	301 aa		4.08	□□□□□ -1.76
CAF4	YKR036C	ERG8	P24521	451 aa		4.07	□□□□□ -1.76
CAF4	YKR036C	SAP30	P38429	201 aa		4.07	□□□□□ -1.76
CAF4	YKR036C	YNL208W	P40159	199 aa	Known RBP	4.07	□□□□□ -1.76
CAF4	YKR036C	GRE1	Q08969	168 aa		4.07	□□□□□ -1.76
CAF4	YKR036C	YKL023C-A	Q2V2P3	75 aa		4.07	□□□□□ -1.76
CAF4	YKR036C	TRA1	P38811	3744 aa		4.07	□□□□□ -1.76
CAF4	YKR036C	PRS4	P38063	326 aa	Predicted RBP	4.07	□□□□□ -1.76
CAF4	YKR036C	YPT10	P38146	199 aa		4.07	□□□□□ -1.76
CAF4	YKR036C	YER121W	P40076	114 aa		4.07	□□□□□ -1.76
CAF4	YKR036C	MIX17	Q03667	156 aa		4.07	□□□□□ -1.76
CAF4	YKR036C	GTO3	Q04806	366 aa		4.07	□□□□□ -1.76
CAF4	YKR036C	TAD3	Q9URQ3	322 aa		4.07	□□□□□ -1.76
CAF4	YKR036C	MSI1	P13712	422 aa		4.06	□□□□□ -1.76
CAF4	YKR036C	KRE1	P17260	313 aa		4.06	□□□□□ -1.76
CAF4	YKR036C	CPT1	P17898	393 aa		4.06	□□□□□ -1.76
CAF4	YKR036C	MRPL24	P36525	258 aa	Predicted RBP	4.06	□□□□□ -1.76
CAF4	YKR036C	DER1	P38307	211 aa		4.06	□□□□□ -1.76
CAF4	YKR036C	YJR096W	P47137	282 aa		4.06	□□□□□ -1.76
CAF4	YKR036C	DSK2	P48510	373 aa		4.06	□□□□□ -1.76
CAF4	YKR036C	ATG4	P53867	494 aa		4.06	□□□□□ -1.76
CAF4	YKR036C	NUP53	Q03790	475 aa		4.06	□□□□□ -1.76
CAF4	YKR036C	MIM1	Q08176	113 aa		4.06	□□□□□ -1.76
CAF4	YKR036C	YOL029C	Q08187	201 aa		4.06	□□□□□ -1.76
CAF4	YKR036C	FIT3	Q08907	204 aa		4.06	□□□□□ -1.76
CAF4	YKR036C	YOR343C	Q12484	108 aa		4.06	□□□□□ -1.76
CAF4	YKR036C	DFM1	Q12743	341 aa	Known RBP	4.06	□□□□□ -1.76
CAF4	YKR036C	CUP9	P41817	306 aa		4.05	□□□□□ -1.76
CAF4	YKR036C	YJL118W	P47022	219 aa		4.05	□□□□□ -1.76
CAF4	YKR036C	SBH2	P52871	88 aa		4.05	□□□□□ -1.76
CAF4	YKR036C	SDS23	P53172	527 aa		4.05	□□□□□ -1.76
CAF4	YKR036C	HEM4	P06174	275 aa		4.05	□□□□□ -1.76
CAF4	YKR036C	PCL1	P24867	279 aa		4.05	□□□□□ -1.76
CAF4	YKR036C	YLR460C	P54007	376 aa		4.05	□□□□□ -1.76
CAF4	YKR036C	RLM1	Q12224	676 aa		4.05	□□□□□ -1.76
CAF4	YKR036C	POM34	Q12445	299 aa		4.05	□□□□□ -1.76
CAF4	YKR036C	YBL112C	Q3E7Y4	105 aa		4.05	□□□□□ -1.76
CAF4	YKR036C	RPL23A	P0CX41	137 aa	Known RBP	4.04	□□□□□ -1.76
CAF4	YKR036C	RPL23B	P0CX42	137 aa	Known RBP	4.04	□□□□□ -1.76
CAF4	YKR036C	YKL044W	P36092	106 aa		4.04	□□□□□ -1.76
CAF4	YKR036C	MIC12	P38341	106 aa		4.04	□□□□□ -1.76
CAF4	YKR036C	YHR180W	P38868	163 aa		4.04	□□□□□ -1.76
CAF4	YKR036C	GEP7	P53171	287 aa		4.04	□□□□□ -1.76
CAF4	YKR036C	YGR050C	P53231	118 aa		4.04	□□□□□ -1.76
CAF4	YKR036C	LIP2	Q06005	328 aa		4.04	□□□□□ -1.76
CAF4	YKR036C	RPS27A	P35997	82 aa	Known RBP	4.03	□□□□□ -1.76
CAF4	YKR036C	SWD3	P38123	315 aa		4.03	□□□□□ -1.76
CAF4	YKR036C	RPS27B	P38711	82 aa		4.03	□□□□□ -1.76
CAF4	YKR036C	OXA1	P39952	402 aa		4.03	□□□□□ -1.76
CAF4	YKR036C	GZF3	P42944	551 aa	Known RBP	4.03	□□□□□ -1.76
CAF4	YKR036C	YFR054C	P43622	192 aa		4.03	□□□□□ -1.76
CAF4	YKR036C	CTK2	P46962	323 aa		4.03	□□□□□ -1.76
CAF4	YKR036C	YIP3	P53633	176 aa		4.03	□□□□□ -1.76
CAF4	YKR036C	SNP1	Q00916	300 aa	Predicted RBP	4.03	□□□□□ -1.76
CAF4	YKR036C	NCE101	Q02820	53 aa		4.03	□□□□□ -1.76
CAF4	YKR036C	ATG21	Q02887	496 aa		4.03	□□□□□ -1.76
CAF4	YKR036C	ECM18	Q04623	453 aa		4.03	□□□□□ -1.76
CAF4	YKR036C	YTH1	Q06102	208 aa	Predicted RBP	4.03	□□□□□ -1.76
CAF4	YKR036C	ATG33	Q06485	197 aa		4.03	□□□□□ -1.76
CAF4	YKR036C	YDL218W	Q07629	317 aa		4.03	□□□□□ -1.76
CAF4	YKR036C	YOL118C	Q08259	102 aa		4.03	□□□□□ -1.76
CAF4	YKR036C	YDL180W	Q12301	547 aa		4.03	□□□□□ -1.76
CAF4	YKR036C	CYR1	P08678	2026 aa	Known RBP	4.03	□□□□□ -1.76
CAF4	YKR036C	CYC3	P06182	269 aa		4.03	□□□□□ -1.76
CAF4	YKR036C	PHO85	P17157	305 aa		4.03	□□□□□ -1.76
CAF4	YKR036C	NHP2	P32495	156 aa	Predicted RBP	4.03	□□□□□ -1.76
CAF4	YKR036C	YER076C	P40049	302 aa		4.03	□□□□□ -1.76
CAF4	YKR036C	EGT2	P42835	1041 aa		4.03	□□□□□ -1.76
CAF4	YKR036C	BNA1	P47096	177 aa		4.03	□□□□□ -1.76
CAF4	YKR036C	WSC2	P53832	503 aa		4.03	□□□□□ -1.76
CAF4	YKR036C	YDR215C	Q12240	137 aa		4.03	□□□□□ -1.76
CAF4	YKR036C	MXR2	P25566	168 aa		4.02	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 23.3 ms