RNA–Protein interactions for RNA: YFR050C

PRE4, Transcript of Beta 7 subunit of the 20S proteasome, yeast

Gene PRE4, Length 801 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PRE4	YFR050C	VMA6	P32366	345 aa	Known RBP	0.82	□□□□□ -2.28
PRE4	YFR050C	ERG24	P32462	438 aa	Known RBP	0.82	□□□□□ -2.28
PRE4	YFR050C	TCD1	P38756	429 aa		0.82	□□□□□ -2.28
PRE4	YFR050C	DOG1	P38774	246 aa		0.82	□□□□□ -2.28
PRE4	YFR050C	CAT5	P41735	233 aa		0.82	□□□□□ -2.28
PRE4	YFR050C	SMD3	P43321	101 aa	Known RBP	0.82	□□□□□ -2.28
PRE4	YFR050C	YIP3	P53633	176 aa		0.82	□□□□□ -2.28
PRE4	YFR050C	CYT2	Q00873	224 aa		0.82	□□□□□ -2.28
PRE4	YFR050C	FAR8	Q05040	523 aa		0.82	□□□□□ -2.28
PRE4	YFR050C	NOC4	Q06512	552 aa	Predicted RBP	0.82	□□□□□ -2.28
PRE4	YFR050C	YDR029W	Q12111	104 aa		0.82	□□□□□ -2.28
PRE4	YFR050C	ERV15	P38312	142 aa		0.81	□□□□□ -2.28
PRE4	YFR050C	YPT31	P38555	223 aa	Known RBP	0.81	□□□□□ -2.28
PRE4	YFR050C	DSE2	P38844	325 aa		0.81	□□□□□ -2.28
PRE4	YFR050C	PET100	P38958	111 aa		0.81	□□□□□ -2.28
PRE4	YFR050C	YGR201C	P42936	225 aa		0.81	□□□□□ -2.28
PRE4	YFR050C	RMR1	P53060	241 aa		0.81	□□□□□ -2.28
PRE4	YFR050C	USE1	P53146	245 aa		0.81	□□□□□ -2.28
PRE4	YFR050C	COG5	P53951	403 aa		0.81	□□□□□ -2.28
PRE4	YFR050C	YOL118C	Q08259	102 aa		0.81	□□□□□ -2.28
PRE4	YFR050C	YPL257W	Q08974	193 aa		0.81	□□□□□ -2.28
PRE4	YFR050C	DCN1	Q12395	269 aa		0.81	□□□□□ -2.28
PRE4	YFR050C	YNL146C-A	Q3E7Z1	64 aa		0.81	□□□□□ -2.28
PRE4	YFR050C	RPL33A	P05744	107 aa	Known RBP	0.8	□□□□□ -2.28
PRE4	YFR050C	NTG1	P31378	399 aa		0.8	□□□□□ -2.28
PRE4	YFR050C	YHR022C	P38763	256 aa		0.8	□□□□□ -2.28
PRE4	YFR050C	RRF1	P38771	230 aa		0.8	□□□□□ -2.28
PRE4	YFR050C	YAR068W	P39564	161 aa		0.8	□□□□□ -2.28
PRE4	YFR050C	RPL33B	P41056	107 aa	Known RBP	0.8	□□□□□ -2.28
PRE4	YFR050C	SAY1	P53324	424 aa		0.8	□□□□□ -2.28
PRE4	YFR050C	SNO1	Q03144	224 aa		0.8	□□□□□ -2.28
PRE4	YFR050C	FIT1	Q04433	528 aa		0.8	□□□□□ -2.28
PRE4	YFR050C	ATG38	Q05789	226 aa	Known RBP	0.8	□□□□□ -2.28
PRE4	YFR050C	YOR186W	Q08560	144 aa		0.8	□□□□□ -2.28
PRE4	YFR050C	SPC3	Q12133	184 aa		0.8	□□□□□ -2.28
PRE4	YFR050C	SNU23	Q12368	194 aa	Predicted RBP	0.8	□□□□□ -2.28
PRE4	YFR050C	YLR156W	P0CE96	114 aa		0.79	□□□□□ -2.28
PRE4	YFR050C	YLR159W	P0CE97	114 aa		0.79	□□□□□ -2.28
PRE4	YFR050C	YLR161W	P0CE98	114 aa		0.79	□□□□□ -2.28
PRE4	YFR050C	PHO13	P19881	312 aa		0.79	□□□□□ -2.28
PRE4	YFR050C	HOM6	P31116	359 aa	Known RBP	0.79	□□□□□ -2.28
PRE4	YFR050C	YBR219C	P38317	127 aa		0.79	□□□□□ -2.28
PRE4	YFR050C	GOS1	P38736	223 aa		0.79	□□□□□ -2.28
PRE4	YFR050C	THO1	P40040	218 aa	Known RBP	0.79	□□□□□ -2.28
PRE4	YFR050C	YER076C	P40049	302 aa		0.79	□□□□□ -2.28
PRE4	YFR050C	POR2	P40478	281 aa		0.79	□□□□□ -2.28
PRE4	YFR050C	YKE4	P40544	346 aa		0.79	□□□□□ -2.28
PRE4	YFR050C	LST8	P41318	303 aa		0.79	□□□□□ -2.28
PRE4	YFR050C	GPI2	P46961	280 aa		0.79	□□□□□ -2.28
PRE4	YFR050C	NRK1	P53915	240 aa		0.79	□□□□□ -2.28
PRE4	YFR050C	HTL1	Q9URQ5	78 aa		0.79	□□□□□ -2.28
PRE4	YFR050C	IPT1	P38954	527 aa		0.78	□□□□□ -2.28
PRE4	YFR050C	SNF11	P38956	169 aa		0.78	□□□□□ -2.28
PRE4	YFR050C	NSA2	P40078	261 aa	Known RBP	0.78	□□□□□ -2.28
PRE4	YFR050C	RIO2	P40160	425 aa	Known RBP	0.78	□□□□□ -2.28
PRE4	YFR050C	YAR1	P46683	200 aa		0.78	□□□□□ -2.28
PRE4	YFR050C	YGL101W	P53144	215 aa		0.78	□□□□□ -2.28
PRE4	YFR050C	SRL4	Q03085	281 aa		0.78	□□□□□ -2.28
PRE4	YFR050C	SDO1	Q07953	250 aa	Known RBP	0.78	□□□□□ -2.28
PRE4	YFR050C	YGR240C-A	Q3E786	66 aa		0.78	□□□□□ -2.28
PRE4	YFR050C	DDI2	P0CH63	225 aa		0.77	□□□□□ -2.29
PRE4	YFR050C	DDI3	P0CH64	225 aa		0.77	□□□□□ -2.29
PRE4	YFR050C	BFR1	P38934	470 aa	Known RBP RIP-Chip data	0.77	□□□□□ -2.29	not detected
PRE4	YFR050C	RTT105	P40063	208 aa		0.77	□□□□□ -2.29
PRE4	YFR050C	ILM1	P47155	203 aa		0.77	□□□□□ -2.29
PRE4	YFR050C	YCT1	Q12235	531 aa		0.77	□□□□□ -2.29
PRE4	YFR050C	YOR020W-A	Q3E824	90 aa		0.77	□□□□□ -2.29
PRE4	YFR050C	FCY2	P17064	533 aa		0.76	□□□□□ -2.29
PRE4	YFR050C	YGL010W	P25338	174 aa		0.76	□□□□□ -2.29
PRE4	YFR050C	BUD23	P25627	275 aa	Predicted RBP	0.76	□□□□□ -2.29
PRE4	YFR050C	MCM22	P47167	239 aa		0.76	□□□□□ -2.29
PRE4	YFR050C	YDR210W	Q03482	75 aa		0.76	□□□□□ -2.29
PRE4	YFR050C	UPS3	Q04006	179 aa		0.76	□□□□□ -2.29
PRE4	YFR050C	RPB3	P16370	318 aa	Known RBP	0.75	□□□□□ -2.29
PRE4	YFR050C	UTP30	P36144	274 aa	Known RBP	0.75	□□□□□ -2.29
PRE4	YFR050C	CCS1	P40202	249 aa	Known RBP	0.75	□□□□□ -2.29
PRE4	YFR050C	ARO8	P53090	500 aa	Known RBP	0.75	□□□□□ -2.29
PRE4	YFR050C	YMR099C	Q03161	297 aa	Known RBP	0.75	□□□□□ -2.29
PRE4	YFR050C	GAL83	Q04739	417 aa		0.75	□□□□□ -2.29
PRE4	YFR050C	SML1	Q04964	104 aa		0.75	□□□□□ -2.29
PRE4	YFR050C	CSM4	Q08955	156 aa		0.75	□□□□□ -2.29
PRE4	YFR050C	TFC1	P32367	649 aa		0.74	□□□□□ -2.29
PRE4	YFR050C	SRY1	P36007	326 aa		0.74	□□□□□ -2.29
PRE4	YFR050C	MRPL17	P36528	281 aa		0.74	□□□□□ -2.29
PRE4	YFR050C	RPF1	P38805	295 aa	Known RBP	0.74	□□□□□ -2.29
PRE4	YFR050C	YGR050C	P53231	118 aa		0.74	□□□□□ -2.29
PRE4	YFR050C	YLR042C	Q07990	161 aa		0.74	□□□□□ -2.29
PRE4	YFR050C	RIB7	P33312	244 aa		0.73	□□□□□ -2.29
PRE4	YFR050C	DOG2	P38773	246 aa		0.73	□□□□□ -2.29
PRE4	YFR050C	IKI1	P38874	309 aa		0.73	□□□□□ -2.29
PRE4	YFR050C	RPL13B	P40212	199 aa	Known RBP	0.73	□□□□□ -2.29
PRE4	YFR050C	BNA6	P43619	295 aa		0.73	□□□□□ -2.29
PRE4	YFR050C	MRPL50	P53724	139 aa		0.73	□□□□□ -2.29
PRE4	YFR050C	YLR162W	Q06235	118 aa		0.73	□□□□□ -2.29
PRE4	YFR050C	YPL162C	Q12042	273 aa		0.73	□□□□□ -2.29
PRE4	YFR050C	DGK1	Q12382	290 aa		0.73	□□□□□ -2.29
PRE4	YFR050C	RPL13A	Q12690	199 aa	Predicted RBP	0.73	□□□□□ -2.29
PRE4	YFR050C	YPR170W-B	P0C5R9	85 aa		0.72	□□□□□ -2.29
PRE4	YFR050C	FZF1	P32805	299 aa		0.72	□□□□□ -2.29
PRE4	YFR050C	YBR013C	P38215	129 aa		0.72	□□□□□ -2.29

Retrieved 100 of 5,963 RNA–protein pairs in 26.1 ms