RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeast

Gene RUB1, Length 234 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RUB1	YDR139C	YGL193C	P53097	103 aa		0.82	□□□□□ -2.28
RUB1	YDR139C	RCF2	P53721	224 aa		0.82	□□□□□ -2.28
RUB1	YDR139C	HAP2	P06774	265 aa		0.81	□□□□□ -2.28
RUB1	YDR139C	ATG8	P38182	117 aa	RIP-Chip data	0.81	□□□□□ -2.28	not detected
RUB1	YDR139C	IPT1	P38954	527 aa		0.81	□□□□□ -2.28
RUB1	YDR139C	ROM2	P51862	1356 aa	Known RBP	0.81	□□□□□ -2.28
RUB1	YDR139C	YPD1	Q07688	167 aa		0.8	□□□□□ -2.28
RUB1	YDR139C	IRC19	Q07843	230 aa		0.8	□□□□□ -2.28
RUB1	YDR139C	QCR2	P07257	368 aa		0.79	□□□□□ -2.28
RUB1	YDR139C	RPS22A	P0C0W1	130 aa	Known RBP	0.79	□□□□□ -2.28
RUB1	YDR139C	APQ12	P40532	138 aa		0.79	□□□□□ -2.28
RUB1	YDR139C	FIP1	P45976	327 aa		0.79	□□□□□ -2.28
RUB1	YDR139C	MGR2	Q02889	113 aa		0.79	□□□□□ -2.28
RUB1	YDR139C	YPR202W	Q08993	238 aa		0.79	□□□□□ -2.28
RUB1	YDR139C	RPS22B	Q3E7Y3	130 aa	Known RBP	0.79	□□□□□ -2.28
RUB1	YDR139C	SRP21	P32342	167 aa		0.78	□□□□□ -2.28
RUB1	YDR139C	RFU1	Q08003	200 aa		0.78	□□□□□ -2.28
RUB1	YDR139C	RIB3	Q99258	208 aa		0.78	□□□□□ -2.28
RUB1	YDR139C	HSL1	P34244	1518 aa		0.78	□□□□□ -2.28
RUB1	YDR139C	PEX34	P25584	144 aa		0.77	□□□□□ -2.29
RUB1	YDR139C	SLM6	P38343	150 aa		0.77	□□□□□ -2.29
RUB1	YDR139C	ATP19	P81451	68 aa		0.77	□□□□□ -2.29
RUB1	YDR139C	SED1	Q01589	338 aa		0.77	□□□□□ -2.29
RUB1	YDR139C	PRM3	Q08931	133 aa		0.77	□□□□□ -2.29
RUB1	YDR139C	PBI2	P0CT04	75 aa	Known RBP	0.76	□□□□□ -2.29
RUB1	YDR139C	SEN15	Q04675	128 aa		0.76	□□□□□ -2.29
RUB1	YDR139C	RRT7	Q07829	113 aa		0.76	□□□□□ -2.29
RUB1	YDR139C	HFA1	P32874	2273 aa		0.75	□□□□□ -2.29
RUB1	YDR139C	RPL33A	P05744	107 aa	Known RBP	0.75	□□□□□ -2.29
RUB1	YDR139C	YER181C	P40097	107 aa		0.75	□□□□□ -2.29
RUB1	YDR139C	YPR153W	Q06537	140 aa		0.75	□□□□□ -2.29
RUB1	YDR139C	GPI11	Q06636	219 aa		0.75	□□□□□ -2.29
RUB1	YDR139C	NSL1	Q12143	216 aa		0.75	□□□□□ -2.29
RUB1	YDR139C	RPS28B	P0C0X0	67 aa	Known RBP	0.74	□□□□□ -2.29
RUB1	YDR139C	PHO13	P19881	312 aa		0.74	□□□□□ -2.29
RUB1	YDR139C	BUB2	P26448	306 aa	Predicted RBP	0.74	□□□□□ -2.29
RUB1	YDR139C	MRPL24	P36525	258 aa	Predicted RBP	0.74	□□□□□ -2.29
RUB1	YDR139C	AME1	P38313	324 aa		0.74	□□□□□ -2.29
RUB1	YDR139C	GPI2	P46961	280 aa		0.74	□□□□□ -2.29
RUB1	YDR139C	RPS28A	Q3E7X9	67 aa	Predicted RBP	0.74	□□□□□ -2.29
RUB1	YDR139C	EFG1	Q3E705	233 aa	Known RBP	0.73	□□□□□ -2.29
RUB1	YDR139C	SCS22	Q6Q595	175 aa		0.73	□□□□□ -2.29
RUB1	YDR139C	YMR141C	P40211	102 aa		0.72	□□□□□ -2.29
RUB1	YDR139C	YJL218W	P40892	196 aa	Known RBP	0.72	□□□□□ -2.29
RUB1	YDR139C	VMA10	P48836	114 aa	Known RBP	0.72	□□□□□ -2.29
RUB1	YDR139C	NHP6A	P11632	93 aa	Known RBP	0.71	□□□□□ -2.3
RUB1	YDR139C	DDR48	P18899	430 aa	Known RBP	0.71	□□□□□ -2.3
RUB1	YDR139C	DER1	P38307	211 aa		0.71	□□□□□ -2.3
RUB1	YDR139C	IRC21	Q04772	201 aa		0.71	□□□□□ -2.3
RUB1	YDR139C	YJL009W	P47078	108 aa		0.7	□□□□□ -2.3
RUB1	YDR139C	DIE2	P50076	525 aa		0.69	□□□□□ -2.3
RUB1	YDR139C	EST3	Q03096	181 aa		0.69	□□□□□ -2.3
RUB1	YDR139C	MHF1	Q3E835	90 aa		0.69	□□□□□ -2.3
RUB1	YDR139C	YGL014C-A	P0C5N1	53 aa		0.68	□□□□□ -2.3
RUB1	YDR139C	RPL43A	P0CX25	92 aa	Known RBP	0.68	□□□□□ -2.3
RUB1	YDR139C	RPL43B	P0CX26	92 aa		0.68	□□□□□ -2.3
RUB1	YDR139C	SRL3	P36167	246 aa		0.68	□□□□□ -2.3
RUB1	YDR139C	YHR140W	P38842	239 aa		0.67	□□□□□ -2.3
RUB1	YDR139C	HUT1	Q12520	339 aa		0.67	□□□□□ -2.3
RUB1	YDR139C	COX5B	P00425	151 aa		0.66	□□□□□ -2.3
RUB1	YDR139C	PRP8	P33334	2413 aa	Known RBP	0.66	□□□□□ -2.3
RUB1	YDR139C	YMR122C	Q03879	124 aa		0.65	□□□□□ -2.31
RUB1	YDR139C	HSP12	P22943	109 aa	Known RBP	0.63	□□□□□ -2.31
RUB1	YDR139C	YCL001W-A	P87012	153 aa		0.63	□□□□□ -2.31
RUB1	YDR139C	YLR307C-A	Q3E825	87 aa		0.63	□□□□□ -2.31
RUB1	YDR139C	FYV5	P25585	152 aa		0.62	□□□□□ -2.31
RUB1	YDR139C	RME1	P32338	300 aa	Known RBP	0.62	□□□□□ -2.31
RUB1	YDR139C	FIG1	P38224	298 aa		0.62	□□□□□ -2.31
RUB1	YDR139C	MVB12	P42939	101 aa		0.62	□□□□□ -2.31
RUB1	YDR139C	YNL019C	P53975	284 aa		0.62	□□□□□ -2.31
RUB1	YDR139C	KTI11	Q3E840	82 aa		0.62	□□□□□ -2.31
RUB1	YDR139C	COA6	Q3E846	104 aa		0.62	□□□□□ -2.31
RUB1	YDR139C	UBR1	P19812	1950 aa		0.61	□□□□□ -2.31
RUB1	YDR139C	CDC39	P25655	2108 aa	Known RBP	0.61	□□□□□ -2.31
RUB1	YDR139C	RPS1B	P23248	255 aa	Known RBP	0.61	□□□□□ -2.31
RUB1	YDR139C	LST8	P41318	303 aa		0.61	□□□□□ -2.31
RUB1	YDR139C	YLR157W-E	P0CF00	54 aa		0.6	□□□□□ -2.31
RUB1	YDR139C	PET20	Q99373	253 aa		0.6	□□□□□ -2.31
RUB1	YDR139C	RAV2	Q03956	351 aa		0.59	□□□□□ -2.31
RUB1	YDR139C	SOM1	Q05676	74 aa		0.59	□□□□□ -2.31
RUB1	YDR139C	ANB1	P19211	157 aa		0.58	□□□□□ -2.32
RUB1	YDR139C	PHB1	P40961	287 aa		0.58	□□□□□ -2.32
RUB1	YDR139C	YGR201C	P42936	225 aa		0.58	□□□□□ -2.32
RUB1	YDR139C	TLG1	Q03322	224 aa		0.58	□□□□□ -2.32
RUB1	YDR139C	YHR213W	P0CI67	198 aa		0.57	□□□□□ -2.32
RUB1	YDR139C	NMT1	P14743	455 aa		0.57	□□□□□ -2.32
RUB1	YDR139C	IPI1	P38803	334 aa	Predicted RBP	0.57	□□□□□ -2.32
RUB1	YDR139C	PKR1	Q03880	122 aa	Known RBP	0.57	□□□□□ -2.32
RUB1	YDR139C	COA4	Q05809	96 aa		0.57	□□□□□ -2.32
RUB1	YDR139C	RAF1	Q06891	181 aa		0.57	□□□□□ -2.32
RUB1	YDR139C	NAT5	Q08689	176 aa		0.57	□□□□□ -2.32
RUB1	YDR139C	YOR034C-A	Q3E735	80 aa		0.57	□□□□□ -2.32
RUB1	YDR139C	HUG1	Q6Q5K6	68 aa		0.57	□□□□□ -2.32
RUB1	YDR139C	FUN14	P18411	198 aa		0.56	□□□□□ -2.32
RUB1	YDR139C	YMR321C	Q04898	105 aa		0.56	□□□□□ -2.32
RUB1	YDR139C	FIT3	Q08907	204 aa		0.56	□□□□□ -2.32
RUB1	YDR139C	DDP1	Q99321	188 aa	Known RBP	0.56	□□□□□ -2.32
RUB1	YDR139C	LSM1	P47017	172 aa	Known RBP	0.55	□□□□□ -2.32
RUB1	YDR139C	RPL40A	P0CH08	128 aa	Known RBP	0.54	□□□□□ -2.32
RUB1	YDR139C	RPL40B	P0CH09	128 aa	Known RBP	0.54	□□□□□ -2.32

Retrieved 100 of 5,963 RNA–protein pairs in 40.4 ms