RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Serpina1eQ00898 413 aa16.24■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Atxn7l3bQ3UD01 97 aa16.24■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Scarf1Q5ND28 820 aa16.24■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Q6GQV0 436 aa16.24■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 DaglbQ91WC9 669 aa16.24■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Oip5A2AQ14 241 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Farp1F8VPU2 1048 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Pou5f1P20263 352 aaKnown RBP16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Atxn10P28658 475 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Zfp956Q3UZY6 572 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Itih1Q61702 907 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Tfe3Q64092 572 aaKnown RBP16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Klhl36Q8R124 613 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Asb11Q9CQ31 323 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Nt5c3aQ9D020 331 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Ankef1Q9D2J7 775 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 CenpkQ9ESN5 271 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Gm7086A0A1W2P766 342 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Rap1gapA2ALS5 663 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 PorP37040 678 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 P2rx5Q3UYI1 455 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Gramd1bQ80TI0 738 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Vmn1r213Q8R278 384 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Smok2bQ9QYZ3 484 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Smok2aQ9QYZ6 504 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Unc13bQ9Z1N9 1602 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Rhox3fA2ANE1 215 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Ccdc62E9PVD1 701 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Folh1O35409 752 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Klc1O88447 541 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Pon1P52430 355 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Pla2g6P97819 807 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Tm4sf1Q64302 202 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 R3hdm2Q80TM6 1044 aaKnown RBP16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Elac2Q80Y81 831 aaKnown RBP16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 CntrobQ8CB62 887 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Ephb1Q8CBF3 984 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Trappc3O55013 180 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Tdrd5Q5VCS6 1040 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 LbpQ61805 481 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Angptl2Q9R045 493 aa16.23■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 AspgA0JNU3 564 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Klhdc7aA2APT9 773 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Olfr310B2RVZ1 332 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 AaasP58742 546 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Msx3P70354 204 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Muc1Q02496 630 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Fbln1Q08879 705 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Spc25Q3UA16 226 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Afap1l2Q5DTU0 825 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Prdm4Q80V63 803 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 MtbpQ8BJS8 894 aaKnown RBP16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Mical2Q8BML1 960 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 RnpepQ8VCT3 650 aaKnown RBP16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Alpk3Q924C5 1678 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Ttll6A4Q9E8 822 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Tbx3P70324 741 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Trim43bP86448 445 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Agxt2Q3UEG6 513 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Znf618Q80YY7 953 aaKnown RBP16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Nod1Q8BHB0 953 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Sik2Q8CFH6 931 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 ChiaQ91XA9 473 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Chordc1Q9D1P4 331 aaKnown RBP16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Adamtsl3G3UXC7 1706 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Atp9aO70228 1047 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Ctnnal1O88327 731 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Uchl4P58321 233 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Ext2P70428 718 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Acsbg2Q2XU92 667 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Gm4952Q5FW57 296 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Ino80dQ66JY2 873 aaKnown RBP16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Sun2Q8BJS4 731 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Neto2Q8BNJ6 525 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Agap3Q8VHH5 910 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Pcdha5Q91Y15 934 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Rnf135Q9CWS1 417 aa16.22■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Palm2Q8BR92 376 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Senp7Q8BUH8 1037 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Stau2Q8CJ67 570 aaKnown RBP16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Celf2Q9Z0H4 508 aaKnown RBP16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Mrpl40Q9Z2Q5 206 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Pdzrn4E9PUZ9 1014 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 KitP05532 979 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Rag1P15919 1040 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Lsg1Q3UM18 644 aaKnown RBP16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Gpatch2lQ6PE65 482 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Phf8Q80TJ7 1023 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Polr2eQ80UW8 210 aaKnown RBP16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Rhpn2Q8BWR8 686 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Igf2bp3Q9CPN8 579 aaKnown RBP16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Psmd9Q9CR00 222 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 MrgbpQ9DAT2 204 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Ing2Q9ESK4 281 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 NfkbizQ9EST8 728 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Plod1Q9R0E2 728 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 Cntnap1O54991 1385 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 RetsatQ64FW2 609 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 CenpuQ8C4M7 410 aa16.21■□□□□ 0.19
Ccdc88b-201ENSMUST00000113440 D630039A03RikQ8K0M7 236 aa16.21■□□□□ 0.19
Retrieved 100 of 22,080 RNA–protein pairs in 32.1 ms