RNA–Protein interactions for RNA: YER111C

SWI4, Transcript of DNA binding component of the SBF complex (Swi4p-Swi6p), yeast

Gene SWI4, Length 3,282 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SWI4	YER111C	YOR342C	Q12182	319 aa		0.84	□□□□□ -2.28
SWI4	YER111C	REP2	P03872	296 aa		0.83	□□□□□ -2.28
SWI4	YER111C	SEC17	P32602	292 aa		0.83	□□□□□ -2.28
SWI4	YER111C	YKR041W	P36134	250 aa		0.83	□□□□□ -2.28
SWI4	YER111C	MRPL17	P36528	281 aa		0.83	□□□□□ -2.28
SWI4	YER111C	DER1	P38307	211 aa		0.83	□□□□□ -2.28
SWI4	YER111C	LSM4	P40070	187 aa	Known RBP	0.83	□□□□□ -2.28
SWI4	YER111C	TMA22	P47089	198 aa	Predicted RBP	0.83	□□□□□ -2.28
SWI4	YER111C	YJR146W	P47174	117 aa		0.83	□□□□□ -2.28
SWI4	YER111C	APJ1	P53940	528 aa		0.83	□□□□□ -2.28
SWI4	YER111C	SWP1	Q02795	286 aa		0.83	□□□□□ -2.28
SWI4	YER111C	PLP1	Q04004	230 aa		0.83	□□□□□ -2.28
SWI4	YER111C	NEJ1	Q06148	342 aa		0.83	□□□□□ -2.28
SWI4	YER111C	YLR031W	Q07978	186 aa		0.83	□□□□□ -2.28
SWI4	YER111C	CPA1	P07258	411 aa	Known RBP	0.83	□□□□□ -2.28
SWI4	YER111C	FIG1	P38224	298 aa		0.83	□□□□□ -2.28
SWI4	YER111C	RPL33B	P41056	107 aa	Known RBP	0.83	□□□□□ -2.28
SWI4	YER111C	YJL144W	P47009	104 aa		0.83	□□□□□ -2.28
SWI4	YER111C	ARP3	P47117	449 aa	Known RBP	0.83	□□□□□ -2.28
SWI4	YER111C	YLR050C	Q12155	161 aa	Known RBP	0.83	□□□□□ -2.28
SWI4	YER111C	RPL26A	P05743	127 aa	Known RBP	0.83	□□□□□ -2.28
SWI4	YER111C	CCA1	P21269	546 aa		0.83	□□□□□ -2.28
SWI4	YER111C	CNB1	P25296	175 aa		0.83	□□□□□ -2.28
SWI4	YER111C	BUB2	P26448	306 aa	Predicted RBP	0.83	□□□□□ -2.28
SWI4	YER111C	MDH3	P32419	343 aa	Known RBP RIP-Chip data	0.83	□□□□□ -2.28	not detected
SWI4	YER111C	YET1	P35723	206 aa		0.83	□□□□□ -2.28
SWI4	YER111C	YHR180W	P38868	163 aa		0.83	□□□□□ -2.28
SWI4	YER111C	YEA4	P40004	342 aa		0.83	□□□□□ -2.28
SWI4	YER111C	RSM25	P40496	264 aa		0.83	□□□□□ -2.28
SWI4	YER111C	GVP36	P40531	326 aa	Known RBP	0.83	□□□□□ -2.28
SWI4	YER111C	JAC1	P53193	184 aa		0.83	□□□□□ -2.28
SWI4	YER111C	RPL26B	P53221	127 aa	Known RBP	0.83	□□□□□ -2.28
SWI4	YER111C	YNL247W	P53852	767 aa	Known RBP	0.83	□□□□□ -2.28
SWI4	YER111C	ATP15	P21306	62 aa		0.82	□□□□□ -2.28
SWI4	YER111C	SNC2	P33328	115 aa		0.82	□□□□□ -2.28
SWI4	YER111C	YKL102C	P34249	101 aa		0.82	□□□□□ -2.28
SWI4	YER111C	PAN3	P36102	679 aa	Predicted RBP	0.82	□□□□□ -2.28
SWI4	YER111C	OPY1	P38271	328 aa		0.82	□□□□□ -2.28
SWI4	YER111C	NVJ1	P38881	321 aa		0.82	□□□□□ -2.28
SWI4	YER111C	MTW1	P39731	289 aa		0.82	□□□□□ -2.28
SWI4	YER111C	ICE2	P40499	491 aa		0.82	□□□□□ -2.28
SWI4	YER111C	SER2	P42941	309 aa		0.82	□□□□□ -2.28
SWI4	YER111C	UBC12	P52491	188 aa		0.82	□□□□□ -2.28
SWI4	YER111C	ERG25	P53045	309 aa		0.82	□□□□□ -2.28
SWI4	YER111C	CAB4	P53332	305 aa		0.82	□□□□□ -2.28
SWI4	YER111C	YDR249C	Q03787	373 aa		0.82	□□□□□ -2.28
SWI4	YER111C	MDN1	Q12019	4910 aa	Known RBP	0.82	□□□□□ -2.28
SWI4	YER111C	RIF1	P29539	1916 aa		0.82	□□□□□ -2.28
SWI4	YER111C	GRX2	P17695	143 aa	Known RBP	0.82	□□□□□ -2.28
SWI4	YER111C	UTR5	P32630	166 aa		0.82	□□□□□ -2.28
SWI4	YER111C	SDH4	P37298	181 aa		0.82	□□□□□ -2.28
SWI4	YER111C	ERV15	P38312	142 aa		0.82	□□□□□ -2.28
SWI4	YER111C	SMD3	P43321	101 aa	Known RBP	0.82	□□□□□ -2.28
SWI4	YER111C	MRPS8	Q03799	155 aa		0.82	□□□□□ -2.28
SWI4	YER111C	YMR315W	Q04869	349 aa	Known RBP	0.82	□□□□□ -2.28
SWI4	YER111C	PET20	Q99373	253 aa		0.82	□□□□□ -2.28
SWI4	YER111C	POR1	P04840	283 aa	Known RBP	0.81	□□□□□ -2.28
SWI4	YER111C	PEX34	P25584	144 aa		0.81	□□□□□ -2.28
SWI4	YER111C	CLG1	P35190	452 aa		0.81	□□□□□ -2.28
SWI4	YER111C	FES1	P38260	290 aa		0.81	□□□□□ -2.28
SWI4	YER111C	CTR2	P38865	189 aa		0.81	□□□□□ -2.28
SWI4	YER111C	FMP32	P43557	207 aa		0.81	□□□□□ -2.28
SWI4	YER111C	CYT2	Q00873	224 aa		0.81	□□□□□ -2.28
SWI4	YER111C	DIG2	Q03373	323 aa	Known RBP	0.81	□□□□□ -2.28
SWI4	YER111C	YMR295C	Q03559	197 aa		0.81	□□□□□ -2.28
SWI4	YER111C	GPI17	Q04080	534 aa		0.81	□□□□□ -2.28
SWI4	YER111C	ARR2	Q06597	130 aa		0.81	□□□□□ -2.28
SWI4	YER111C	YLR053C	Q12026	108 aa		0.81	□□□□□ -2.28
SWI4	YER111C	YAR023C	D6VPM8	179 aa		0.81	□□□□□ -2.28
SWI4	YER111C	PEX4	P29340	183 aa		0.81	□□□□□ -2.28
SWI4	YER111C	UMP1	P38293	148 aa		0.81	□□□□□ -2.28
SWI4	YER111C	SOK1	P40317	901 aa		0.81	□□□□□ -2.28
SWI4	YER111C	PRM10	P42946	383 aa		0.81	□□□□□ -2.28
SWI4	YER111C	YJL027C	P47063	138 aa	Predicted RBP	0.81	□□□□□ -2.28
SWI4	YER111C	GPI14	P47088	403 aa	Known RBP	0.81	□□□□□ -2.28
SWI4	YER111C	COS6	P53344	381 aa		0.81	□□□□□ -2.28
SWI4	YER111C	YNR062C	P53748	327 aa		0.81	□□□□□ -2.28
SWI4	YER111C	HRT1	Q08273	121 aa		0.81	□□□□□ -2.28
SWI4	YER111C	MPD1	Q12404	318 aa	Known RBP	0.81	□□□□□ -2.28
SWI4	YER111C	PDR18	P53756	1333 aa		0.81	□□□□□ -2.28
SWI4	YER111C	CLB6	P32943	380 aa		0.81	□□□□□ -2.28
SWI4	YER111C	YOR062C	P36025	268 aa		0.81	□□□□□ -2.28
SWI4	YER111C	YNL217W	P40152	326 aa		0.81	□□□□□ -2.28
SWI4	YER111C	AGE2	P40529	298 aa		0.81	□□□□□ -2.28
SWI4	YER111C	TIM13	P53299	105 aa		0.81	□□□□□ -2.28
SWI4	YER111C	YNR077C	P53758	84 aa		0.81	□□□□□ -2.28
SWI4	YER111C	PGA1	P53896	198 aa		0.81	□□□□□ -2.28
SWI4	YER111C	TMA20	P89886	181 aa	Predicted RBP	0.81	□□□□□ -2.28
SWI4	YER111C	RGM1	Q00453	211 aa		0.81	□□□□□ -2.28
SWI4	YER111C	VPS71	Q03433	280 aa		0.81	□□□□□ -2.28
SWI4	YER111C	HPT1	Q04178	221 aa	Known RBP	0.81	□□□□□ -2.28
SWI4	YER111C	DYN3	Q04949	312 aa		0.81	□□□□□ -2.28
SWI4	YER111C	FYV12	Q08559	129 aa		0.81	□□□□□ -2.28
SWI4	YER111C	ECM29	P38737	1868 aa		0.8	□□□□□ -2.28
SWI4	YER111C	RAS2	P01120	322 aa	Known RBP	0.8	□□□□□ -2.28
SWI4	YER111C	PHO88	P38264	188 aa	Predicted RBP	0.8	□□□□□ -2.28
SWI4	YER111C	EDC3	P39998	551 aa	Known RBP	0.8	□□□□□ -2.28
SWI4	YER111C	VTC1	P40046	129 aa	RIP-Chip data	0.8	□□□□□ -2.28	not detected
SWI4	YER111C	CUP9	P41817	306 aa		0.8	□□□□□ -2.28
SWI4	YER111C	NUP49	Q02199	472 aa		0.8	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 44.6 ms