RNA–Protein interactions for RNA: YIL008W

URM1, Transcript of Ubiquitin-like protein involved in thiolation of cytoplasmic tRNAs, yeast

Gene URM1, Length 300 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
URM1	YIL008W	ATG31	Q12421	196 aa		0.71	□□□□□ -2.3
URM1	YIL008W	RRP36	Q12481	300 aa	Predicted RBP	0.71	□□□□□ -2.3
URM1	YIL008W	DYN1	P36022	4092 aa		0.71	□□□□□ -2.3
URM1	YIL008W	RIF1	P29539	1916 aa		0.7	□□□□□ -2.3
URM1	YIL008W	TFC1	P32367	649 aa		0.7	□□□□□ -2.3
URM1	YIL008W	RPT5	P33297	434 aa	Known RBP	0.7	□□□□□ -2.3
URM1	YIL008W	UMP1	P38293	148 aa		0.7	□□□□□ -2.3
URM1	YIL008W	DOG2	P38773	246 aa		0.7	□□□□□ -2.3
URM1	YIL008W	RPL37A	P49166	88 aa	Known RBP	0.7	□□□□□ -2.3
URM1	YIL008W	YNR077C	P53758	84 aa		0.7	□□□□□ -2.3
URM1	YIL008W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	0.7	□□□□□ -2.3	not detected
URM1	YIL008W	SNZ1	Q03148	297 aa		0.7	□□□□□ -2.3
URM1	YIL008W	LPP1	Q04396	274 aa		0.7	□□□□□ -2.3
URM1	YIL008W	GPM2	Q12008	311 aa		0.7	□□□□□ -2.3
URM1	YIL008W	LSO2	Q3E772	92 aa	Known RBP	0.7	□□□□□ -2.3
URM1	YIL008W	MDN1	Q12019	4910 aa	Known RBP	0.7	□□□□□ -2.3
URM1	YIL008W	YLR156W	P0CE96	114 aa		0.69	□□□□□ -2.3
URM1	YIL008W	YLR159W	P0CE97	114 aa		0.69	□□□□□ -2.3
URM1	YIL008W	YLR161W	P0CE98	114 aa		0.69	□□□□□ -2.3
URM1	YIL008W	MRPL25	P23369	157 aa		0.69	□□□□□ -2.3
URM1	YIL008W	ATG22	P25568	528 aa		0.69	□□□□□ -2.3
URM1	YIL008W	KDX1	P36005	433 aa		0.69	□□□□□ -2.3
URM1	YIL008W	CUE1	P38428	203 aa		0.69	□□□□□ -2.3
URM1	YIL008W	RIO2	P40160	425 aa	Known RBP	0.69	□□□□□ -2.3
URM1	YIL008W	ERJ5	P43613	295 aa	Predicted RBP	0.69	□□□□□ -2.3
URM1	YIL008W	TRM9	P49957	279 aa		0.69	□□□□□ -2.3
URM1	YIL008W	CUS2	P53830	285 aa	Predicted RBP	0.69	□□□□□ -2.3
URM1	YIL008W	POP3	P53833	195 aa	Predicted RBP	0.69	□□□□□ -2.3
URM1	YIL008W	PGA2	P53903	129 aa		0.69	□□□□□ -2.3
URM1	YIL008W	YOL024W	Q08172	172 aa		0.69	□□□□□ -2.3
URM1	YIL008W	YDL180W	Q12301	547 aa		0.69	□□□□□ -2.3
URM1	YIL008W	BCY1	P07278	416 aa	Known RBP	0.68	□□□□□ -2.3
URM1	YIL008W	SNC2	P33328	115 aa		0.68	□□□□□ -2.3
URM1	YIL008W	BMH2	P34730	273 aa	Known RBP	0.68	□□□□□ -2.3
URM1	YIL008W	MRPL28	P36527	147 aa		0.68	□□□□□ -2.3
URM1	YIL008W	OPY1	P38271	328 aa		0.68	□□□□□ -2.3
URM1	YIL008W	YBR209W	P38311	105 aa		0.68	□□□□□ -2.3
URM1	YIL008W	POP4	P38336	279 aa		0.68	□□□□□ -2.3
URM1	YIL008W	SIP3	P38717	1229 aa		0.68	□□□□□ -2.3
URM1	YIL008W	NSA1	P53136	463 aa	Predicted RBP	0.68	□□□□□ -2.3
URM1	YIL008W	SWP1	Q02795	286 aa		0.68	□□□□□ -2.3
URM1	YIL008W	YDR248C	Q03786	193 aa		0.68	□□□□□ -2.3
URM1	YIL008W	FUS2	Q05670	677 aa		0.68	□□□□□ -2.3
URM1	YIL008W	YLR173W	Q06247	608 aa		0.68	□□□□□ -2.3
URM1	YIL008W	RRT8	Q08219	342 aa		0.68	□□□□□ -2.3
URM1	YIL008W	YRA1	Q12159	226 aa	Known RBP	0.68	□□□□□ -2.3
URM1	YIL008W	YOR097C	Q12274	175 aa	Predicted RBP	0.68	□□□□□ -2.3
URM1	YIL008W	SPT3	P06844	337 aa		0.67	□□□□□ -2.3
URM1	YIL008W	RPO26	P20435	155 aa		0.67	□□□□□ -2.3
URM1	YIL008W	NTF2	P33331	125 aa	Known RBP	0.67	□□□□□ -2.3
URM1	YIL008W	YUH1	P35127	236 aa		0.67	□□□□□ -2.3
URM1	YIL008W	MRPL17	P36528	281 aa		0.67	□□□□□ -2.3
URM1	YIL008W	GAS3	Q03655	524 aa		0.67	□□□□□ -2.3
URM1	YIL008W	NKP2	Q06162	153 aa		0.67	□□□□□ -2.3
URM1	YIL008W	ATG10	Q07879	167 aa		0.67	□□□□□ -2.3
URM1	YIL008W	FSF1	Q12029	327 aa	Known RBP	0.67	□□□□□ -2.3
URM1	YIL008W	TSC3	Q3E790	80 aa		0.67	□□□□□ -2.3
URM1	YIL008W	YNL146C-A	Q3E7Z1	64 aa		0.67	□□□□□ -2.3
URM1	YIL008W	YER188C-A	P0C0V2	99 aa		0.66	□□□□□ -2.3
URM1	YIL008W	CDC10	P25342	322 aa	Known RBP	0.66	□□□□□ -2.3
URM1	YIL008W	TAF14	P35189	244 aa		0.66	□□□□□ -2.3
URM1	YIL008W	YEL067C	P39978	195 aa		0.66	□□□□□ -2.3
URM1	YIL008W	PHB1	P40961	287 aa		0.66	□□□□□ -2.3
URM1	YIL008W	KNH1	P50112	268 aa		0.66	□□□□□ -2.3
URM1	YIL008W	EMC4	P53073	190 aa		0.66	□□□□□ -2.3
URM1	YIL008W	RTC4	P53850	401 aa		0.66	□□□□□ -2.3
URM1	YIL008W	PIR1	Q03178	341 aa		0.66	□□□□□ -2.3
URM1	YIL008W	ABP140	Q08641	628 aa	Known RBP	0.66	□□□□□ -2.3
URM1	YIL008W	YLR046C	Q12253	270 aa		0.66	□□□□□ -2.3
URM1	YIL008W	MED4	Q12343	284 aa		0.66	□□□□□ -2.3
URM1	YIL008W	JIP3	O13555	125 aa		0.65	□□□□□ -2.31
URM1	YIL008W	TIM9	O74700	87 aa		0.65	□□□□□ -2.31
URM1	YIL008W	AQY2	P0CD90	149 aa		0.65	□□□□□ -2.31
URM1	YIL008W	MATALPHA2	P0CY08	210 aa		0.65	□□□□□ -2.31
URM1	YIL008W	HMLALPHA2	P0CY09	210 aa		0.65	□□□□□ -2.31
URM1	YIL008W	SRY1	P36007	326 aa		0.65	□□□□□ -2.31
URM1	YIL008W	LDB7	P38210	180 aa		0.65	□□□□□ -2.31
URM1	YIL008W	FMC1	P40491	155 aa		0.65	□□□□□ -2.31
URM1	YIL008W	GVP36	P40531	326 aa	Known RBP	0.65	□□□□□ -2.31
URM1	YIL008W	PRM8	P53174	237 aa		0.65	□□□□□ -2.31
URM1	YIL008W	TIM8	P57744	87 aa		0.65	□□□□□ -2.31
URM1	YIL008W	SRL4	Q03085	281 aa		0.65	□□□□□ -2.31
URM1	YIL008W	YMR007W	Q03675	126 aa		0.65	□□□□□ -2.31
URM1	YIL008W	YPR114W	Q06107	315 aa		0.65	□□□□□ -2.31
URM1	YIL008W	GIS3	Q12418	502 aa		0.65	□□□□□ -2.31
URM1	YIL008W	PEX11	Q12462	236 aa		0.65	□□□□□ -2.31
URM1	YIL008W	TDA8	Q6B2U8	126 aa		0.65	□□□□□ -2.31
URM1	YIL008W	URA2	P07259	2214 aa	Known RBP	0.65	□□□□□ -2.31
URM1	YIL008W	CDC39	P25655	2108 aa	Known RBP	0.64	□□□□□ -2.31
URM1	YIL008W	NSP1	P14907	823 aa	Known RBP	0.64	□□□□□ -2.31
URM1	YIL008W	URA6	P15700	204 aa		0.64	□□□□□ -2.31
URM1	YIL008W	PBN1	P25580	416 aa		0.64	□□□□□ -2.31
URM1	YIL008W	SKG1	P36169	355 aa		0.64	□□□□□ -2.31
URM1	YIL008W	MRPL15	P36523	253 aa		0.64	□□□□□ -2.31
URM1	YIL008W	EDC3	P39998	551 aa	Known RBP	0.64	□□□□□ -2.31
URM1	YIL008W	RPC17	P47076	161 aa		0.64	□□□□□ -2.31
URM1	YIL008W	RPL37B	P51402	88 aa	Known RBP	0.64	□□□□□ -2.31
URM1	YIL008W	ARO80	Q04052	950 aa		0.64	□□□□□ -2.31
URM1	YIL008W	YOR342C	Q12182	319 aa		0.64	□□□□□ -2.31
URM1	YIL008W	ATG40	Q99325	256 aa		0.64	□□□□□ -2.31

Retrieved 100 of 5,963 RNA–protein pairs in 28.8 ms