RNA–Protein interactions for RNA: YDR073W

SNF11, Transcript of Subunit of the SWI/SNF chromatin remodeling complex, yeast

Gene SNF11, Length 510 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNF11	YDR073W	YDL180W	Q12301	547 aa		4.05	□□□□□ -1.76
SNF11	YDR073W	DGK1	Q12382	290 aa		4.05	□□□□□ -1.76
SNF11	YDR073W	MSW1	P04803	379 aa		4.04	□□□□□ -1.76
SNF11	YDR073W	MID2	P36027	376 aa		4.04	□□□□□ -1.76
SNF11	YDR073W	MRPL17	P36528	281 aa		4.04	□□□□□ -1.76
SNF11	YDR073W	YEA4	P40004	342 aa		4.04	□□□□□ -1.76
SNF11	YDR073W	FCY21	P40039	528 aa		4.04	□□□□□ -1.76
SNF11	YDR073W	YER134C	P40081	178 aa		4.04	□□□□□ -1.76
SNF11	YDR073W	SOL1	P50278	321 aa		4.04	□□□□□ -1.76
SNF11	YDR073W	HHT1	P61830	136 aa		4.04	□□□□□ -1.76
SNF11	YDR073W	THI74	Q04083	370 aa		4.04	□□□□□ -1.76
SNF11	YDR073W	CPA1	P07258	411 aa	Known RBP	4.03	□□□□□ -1.76
SNF11	YDR073W	CTR2	P38865	189 aa		4.03	□□□□□ -1.76
SNF11	YDR073W	APQ12	P40532	138 aa		4.03	□□□□□ -1.76
SNF11	YDR073W	YGR201C	P42936	225 aa		4.03	□□□□□ -1.76
SNF11	YDR073W	YDR274C	P87283	123 aa		4.03	□□□□□ -1.76
SNF11	YDR073W	PAN3	P36102	679 aa	Predicted RBP	4.02	□□□□□ -1.77
SNF11	YDR073W	SMD3	P43321	101 aa	Known RBP	4.02	□□□□□ -1.77
SNF11	YDR073W	TTI2	P47168	421 aa		4.02	□□□□□ -1.77
SNF11	YDR073W	DAS2	Q12084	232 aa		4.02	□□□□□ -1.77
SNF11	YDR073W	YLR412C-A	Q3E742	68 aa		4.02	□□□□□ -1.77
SNF11	YDR073W	CSH1	P38287	376 aa		4.01	□□□□□ -1.77
SNF11	YDR073W	AGE2	P40529	298 aa		4.01	□□□□□ -1.77
SNF11	YDR073W	GVP36	P40531	326 aa	Known RBP	4.01	□□□□□ -1.77
SNF11	YDR073W	PIR5	P46999	287 aa		4.01	□□□□□ -1.77
SNF11	YDR073W	YJR015W	P47090	510 aa		4.01	□□□□□ -1.77
SNF11	YDR073W	RPS23A	P0CX29	145 aa	Known RBP	4	□□□□□ -1.77
SNF11	YDR073W	RPS23B	P0CX30	145 aa		4	□□□□□ -1.77
SNF11	YDR073W	YFL019C	P43576	117 aa		4	□□□□□ -1.77
SNF11	YDR073W	SNX4	P47057	423 aa		4	□□□□□ -1.77
SNF11	YDR073W	SPG3	Q04398	127 aa	Predicted RBP	4	□□□□□ -1.77
SNF11	YDR073W	ODC2	Q99297	307 aa		4	□□□□□ -1.77
SNF11	YDR073W	YAR023C	D6VPM8	179 aa		3.99	□□□□□ -1.77
SNF11	YDR073W	PGD1	P40356	397 aa		3.99	□□□□□ -1.77
SNF11	YDR073W	RBL2	P48606	106 aa	Known RBP	3.99	□□□□□ -1.77
SNF11	YDR073W	RPL30	P14120	105 aa	Known RBP	3.98	□□□□□ -1.77
SNF11	YDR073W	STP22	P25604	385 aa		3.98	□□□□□ -1.77
SNF11	YDR073W	SNC2	P33328	115 aa		3.98	□□□□□ -1.77
SNF11	YDR073W	SFK1	P35735	353 aa		3.98	□□□□□ -1.77
SNF11	YDR073W	DLS1	P40366	167 aa		3.98	□□□□□ -1.77
SNF11	YDR073W	ORM1	P53224	222 aa		3.98	□□□□□ -1.77
SNF11	YDR073W	TIM13	P53299	105 aa		3.98	□□□□□ -1.77
SNF11	YDR073W	VPS71	Q03433	280 aa		3.98	□□□□□ -1.77
SNF11	YDR073W	NAT3	Q06504	195 aa		3.98	□□□□□ -1.77
SNF11	YDR073W	UMP1	P38293	148 aa		3.97	□□□□□ -1.77
SNF11	YDR073W	VTC1	P40046	129 aa	RIP-Chip data	3.97	□□□□□ -1.77	not detected
SNF11	YDR073W	YMR099C	Q03161	297 aa	Known RBP	3.97	□□□□□ -1.77
SNF11	YDR073W	FEX1	Q08913	375 aa		3.97	□□□□□ -1.77
SNF11	YDR073W	FEX2	Q08991	375 aa		3.97	□□□□□ -1.77
SNF11	YDR073W	NSP1	P14907	823 aa	Known RBP	3.96	□□□□□ -1.78
SNF11	YDR073W	YBR285W	P38354	144 aa		3.96	□□□□□ -1.78
SNF11	YDR073W	EAF6	P47128	113 aa		3.96	□□□□□ -1.78
SNF11	YDR073W	CAB4	P53332	305 aa		3.96	□□□□□ -1.78
SNF11	YDR073W	NEJ1	Q06148	342 aa		3.96	□□□□□ -1.78
SNF11	YDR073W	SOD1	P00445	154 aa	Known RBP	3.95	□□□□□ -1.78
SNF11	YDR073W	SCM4	P32564	187 aa		3.95	□□□□□ -1.78
SNF11	YDR073W	YHL026C	P38740	315 aa		3.95	□□□□□ -1.78
SNF11	YDR073W	YER084W	P40057	128 aa		3.95	□□□□□ -1.78
SNF11	YDR073W	MRPS8	Q03799	155 aa		3.95	□□□□□ -1.78
SNF11	YDR073W	CSN9	Q03981	162 aa		3.95	□□□□□ -1.78
SNF11	YDR073W	VMA22	P38784	181 aa		3.94	□□□□□ -1.78
SNF11	YDR073W	YHR180W	P38868	163 aa		3.94	□□□□□ -1.78
SNF11	YDR073W	PHB1	P40961	287 aa		3.94	□□□□□ -1.78
SNF11	YDR073W	YMR295C	Q03559	197 aa		3.94	□□□□□ -1.78
SNF11	YDR073W	YOR214C	Q12282	236 aa		3.94	□□□□□ -1.78
SNF11	YDR073W	POR1	P04840	283 aa	Known RBP	3.93	□□□□□ -1.78
SNF11	YDR073W	YPL073C	P40323	161 aa		3.93	□□□□□ -1.78
SNF11	YDR073W	GLR1	P41921	483 aa	Known RBP	3.93	□□□□□ -1.78
SNF11	YDR073W	ERJ5	P43613	295 aa	Predicted RBP	3.93	□□□□□ -1.78
SNF11	YDR073W	CCC1	P47818	322 aa		3.93	□□□□□ -1.78
SNF11	YDR073W	YLR361C-A	Q3E795	98 aa		3.93	□□□□□ -1.78
SNF11	YDR073W	ATP5	P09457	212 aa		3.92	□□□□□ -1.78
SNF11	YDR073W	RSA4	P25382	515 aa	Known RBP	3.92	□□□□□ -1.78
SNF11	YDR073W	YET1	P35723	206 aa		3.92	□□□□□ -1.78
SNF11	YDR073W	SHE2	P36068	246 aa	Known RBP RIP-Chip data	3.92	□□□□□ -1.78	not detected
SNF11	YDR073W	SBH1	P52870	82 aa		3.92	□□□□□ -1.78
SNF11	YDR073W	YGR219W	P53307	113 aa		3.92	□□□□□ -1.78
SNF11	YDR073W	VPS28	Q02767	242 aa		3.92	□□□□□ -1.78
SNF11	YDR073W	RFU1	Q08003	200 aa		3.92	□□□□□ -1.78
SNF11	YDR073W	PST2	Q12335	198 aa	Known RBP	3.92	□□□□□ -1.78
SNF11	YDR073W	RIB3	Q99258	208 aa		3.92	□□□□□ -1.78
SNF11	YDR073W	NHP6A	P11632	93 aa	Known RBP	3.91	□□□□□ -1.78
SNF11	YDR073W	KRE1	P17260	313 aa		3.91	□□□□□ -1.78
SNF11	YDR073W	SUA7	P29055	345 aa	Predicted RBP	3.91	□□□□□ -1.78
SNF11	YDR073W	CIN5	P40917	295 aa		3.91	□□□□□ -1.78
SNF11	YDR073W	CUP9	P41817	306 aa		3.91	□□□□□ -1.78
SNF11	YDR073W	YFR054C	P43622	192 aa		3.91	□□□□□ -1.78
SNF11	YDR073W	UBC7	Q02159	165 aa		3.91	□□□□□ -1.78
SNF11	YDR073W	ECM5	Q03214	1411 aa		3.91	□□□□□ -1.78
SNF11	YDR073W	ATO3	Q12359	275 aa		3.91	□□□□□ -1.78
SNF11	YDR073W	NSA2	P40078	261 aa	Known RBP	3.9	□□□□□ -1.79
SNF11	YDR073W	RPL33B	P41056	107 aa	Known RBP	3.9	□□□□□ -1.79
SNF11	YDR073W	DOC1	P53068	250 aa		3.9	□□□□□ -1.79
SNF11	YDR073W	DYN2	Q02647	92 aa		3.9	□□□□□ -1.79
SNF11	YDR073W	DIG2	Q03373	323 aa	Known RBP	3.9	□□□□□ -1.79
SNF11	YDR073W	YMR320W	Q04897	101 aa		3.9	□□□□□ -1.79
SNF11	YDR073W	RPL26A	P05743	127 aa	Known RBP	3.89	□□□□□ -1.79
SNF11	YDR073W	AGA2	P32781	87 aa		3.89	□□□□□ -1.79
SNF11	YDR073W	CPR5	P35176	225 aa		3.89	□□□□□ -1.79
SNF11	YDR073W	FIP1	P45976	327 aa		3.89	□□□□□ -1.79

Retrieved 100 of 5,963 RNA–protein pairs in 22.9 ms