RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeastyeast

Gene RRP40, Length 723 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RRP40YOL142W CLB6P32943 380 aa3.66□□□□□ -1.82
RRP40YOL142W SFK1P35735 353 aa3.66□□□□□ -1.82
RRP40YOL142W YBR220CP38318 560 aa3.66□□□□□ -1.82
RRP40YOL142W TIR3P40552 269 aa3.66□□□□□ -1.82
RRP40YOL142W IGD1P43598 195 aa3.66□□□□□ -1.82
RRP40YOL142W CIN2P46670 268 aa3.66□□□□□ -1.82
RRP40YOL142W HEM25Q07534 307 aa3.66□□□□□ -1.82
RRP40YOL142W LDS2Q08218 356 aa3.66□□□□□ -1.82
RRP40YOL142W TIR4Q12218 487 aaPredicted RBP3.66□□□□□ -1.82
RRP40YOL142W UTP20P35194 2493 aaKnown RBP3.65□□□□□ -1.82
RRP40YOL142W TDH3P00359 332 aaKnown RBP RIP-Chip data3.65□□□□□ -1.83not detected
RRP40YOL142W DLS1P40366 167 aa3.65□□□□□ -1.83
RRP40YOL142W FLX1P40464 311 aa3.65□□□□□ -1.83
RRP40YOL142W ERJ5P43613 295 aaPredicted RBP3.65□□□□□ -1.83
RRP40YOL142W BNA6P43619 295 aa3.65□□□□□ -1.83
RRP40YOL142W YJL055WP47044 245 aa3.65□□□□□ -1.83
RRP40YOL142W YGL262WP53054 175 aa3.65□□□□□ -1.83
RRP40YOL142W DOC1P53068 250 aa3.65□□□□□ -1.83
RRP40YOL142W SED1Q01589 338 aa3.65□□□□□ -1.83
RRP40YOL142W YMR279CQ03263 540 aa3.65□□□□□ -1.83
RRP40YOL142W DIG2Q03373 323 aaKnown RBP3.65□□□□□ -1.83
RRP40YOL142W MGR3Q04472 501 aa3.65□□□□□ -1.83
RRP40YOL142W ASR1Q06834 288 aa3.65□□□□□ -1.83
RRP40YOL142W ATG41Q12048 136 aa3.65□□□□□ -1.83
RRP40YOL142W IES3Q12345 250 aa3.65□□□□□ -1.83
RRP40YOL142W REP1P03871 373 aa3.64□□□□□ -1.83
RRP40YOL142W SGA1P08019 549 aa3.64□□□□□ -1.83
RRP40YOL142W RPS23AP0CX29 145 aaKnown RBP3.64□□□□□ -1.83
RRP40YOL142W RPS23BP0CX30 145 aa3.64□□□□□ -1.83
RRP40YOL142W RPL35AP0CX84 120 aaKnown RBP3.64□□□□□ -1.83
RRP40YOL142W RPL35BP0CX85 120 aaKnown RBP3.64□□□□□ -1.83
RRP40YOL142W HXT2P23585 541 aa3.64□□□□□ -1.83
RRP40YOL142W DPB2P24482 689 aaPredicted RBP3.64□□□□□ -1.83
RRP40YOL142W DAL80P26343 269 aa3.64□□□□□ -1.83
RRP40YOL142W YKL187CP34231 750 aa3.64□□□□□ -1.83
RRP40YOL142W TMA19P35691 167 aaKnown RBP3.64□□□□□ -1.83
RRP40YOL142W MRPL27P36526 146 aaPredicted RBP3.64□□□□□ -1.83
RRP40YOL142W SSH1P38353 490 aaKnown RBP3.64□□□□□ -1.83
RRP40YOL142W PRS3P38689 320 aaKnown RBP3.64□□□□□ -1.83
RRP40YOL142W UBC13P52490 153 aa3.64□□□□□ -1.83
RRP40YOL142W YGL159WP53110 370 aa3.64□□□□□ -1.83
RRP40YOL142W MRH4P53166 561 aa3.64□□□□□ -1.83
RRP40YOL142W PXR1P53335 271 aaPredicted RBP3.64□□□□□ -1.83
RRP40YOL142W RRS1Q08746 203 aaKnown RBP3.64□□□□□ -1.83
RRP40YOL142W HIS3P06633 220 aa3.63□□□□□ -1.83
RRP40YOL142W RPS18AP0CX55 146 aaKnown RBP3.63□□□□□ -1.83
RRP40YOL142W RPS18BP0CX56 146 aaPredicted RBP3.63□□□□□ -1.83
RRP40YOL142W RPL30P14120 105 aaKnown RBP3.63□□□□□ -1.83
RRP40YOL142W SAG1P20840 650 aa3.63□□□□□ -1.83
RRP40YOL142W SNC2P33328 115 aa3.63□□□□□ -1.83
RRP40YOL142W UTP11P34247 250 aaPredicted RBP3.63□□□□□ -1.83
RRP40YOL142W MCH2P36032 473 aa3.63□□□□□ -1.83
RRP40YOL142W SHE2P36068 246 aaKnown RBP RIP-Chip data3.63□□□□□ -1.83not detected
RRP40YOL142W MBA1P38300 278 aa3.63□□□□□ -1.83
RRP40YOL142W KEG1P43614 200 aa3.63□□□□□ -1.83
RRP40YOL142W YJL016WP47072 561 aa3.63□□□□□ -1.83
RRP40YOL142W NSA1P53136 463 aaPredicted RBP3.63□□□□□ -1.83
RRP40YOL142W NRK1P53915 240 aa3.63□□□□□ -1.83
RRP40YOL142W APJ1P53940 528 aa3.63□□□□□ -1.83
RRP40YOL142W RNH201P53942 307 aa3.63□□□□□ -1.83
RRP40YOL142W LAP3Q01532 483 aaKnown RBP RIP-Chip data3.63□□□□□ -1.83not detected
RRP40YOL142W YPL077CQ02831 240 aa3.63□□□□□ -1.83
RRP40YOL142W YDC1Q02896 317 aa3.63□□□□□ -1.83
RRP40YOL142W SRL4Q03085 281 aa3.63□□□□□ -1.83
RRP40YOL142W PEX30Q06169 523 aa3.63□□□□□ -1.83
RRP40YOL142W PML1Q07930 204 aaPredicted RBP3.63□□□□□ -1.83
RRP40YOL142W RFU1Q08003 200 aa3.63□□□□□ -1.83
RRP40YOL142W MSH5Q12175 901 aa3.63□□□□□ -1.83
RRP40YOL142W USB1Q12208 290 aaKnown RBP3.63□□□□□ -1.83
RRP40YOL142W SUS1Q6WNK7 96 aa3.63□□□□□ -1.83
RRP40YOL142W RPL6BP05739 176 aaKnown RBP3.62□□□□□ -1.83
RRP40YOL142W ARO4P32449 370 aaKnown RBP3.62□□□□□ -1.83
RRP40YOL142W RCN1P36054 211 aa3.62□□□□□ -1.83
RRP40YOL142W LSM12P38828 187 aaKnown RBP3.62□□□□□ -1.83
RRP40YOL142W ECM14P38836 430 aa3.62□□□□□ -1.83
RRP40YOL142W FCY21P40039 528 aa3.62□□□□□ -1.83
RRP40YOL142W GLR1P41921 483 aaKnown RBP3.62□□□□□ -1.83
RRP40YOL142W CWC23P52868 283 aaPredicted RBP3.62□□□□□ -1.83
RRP40YOL142W ERV29P53337 310 aa3.62□□□□□ -1.83
RRP40YOL142W BUD25P85052 153 aa3.62□□□□□ -1.83
RRP40YOL142W YPR098CQ06089 161 aa3.62□□□□□ -1.83
RRP40YOL142W GPN3Q06543 272 aa3.62□□□□□ -1.83
RRP40YOL142W MRX9Q07349 420 aaKnown RBP3.62□□□□□ -1.83
RRP40YOL142W PEX27Q08580 376 aa3.62□□□□□ -1.83
RRP40YOL142W DCP1Q12517 231 aaPredicted RBP3.62□□□□□ -1.83
RRP40YOL142W HUT1Q12520 339 aa3.62□□□□□ -1.83
RRP40YOL142W Q0297Q9ZZV8 51 aa3.62□□□□□ -1.83
RRP40YOL142W CDC28P00546 298 aaKnown RBP3.61□□□□□ -1.83
RRP40YOL142W PET18P25362 215 aa3.61□□□□□ -1.83
RRP40YOL142W PEX4P29340 183 aa3.61□□□□□ -1.83
RRP40YOL142W HOM6P31116 359 aaKnown RBP3.61□□□□□ -1.83
RRP40YOL142W AGA2P32781 87 aa3.61□□□□□ -1.83
RRP40YOL142W HTD2P38790 280 aaKnown RBP3.61□□□□□ -1.83
RRP40YOL142W SMB1P40018 196 aaKnown RBP3.61□□□□□ -1.83
RRP40YOL142W YIL012WP40551 113 aa3.61□□□□□ -1.83
RRP40YOL142W FMP48P53233 369 aa3.61□□□□□ -1.83
RRP40YOL142W YNL046WP53956 172 aa3.61□□□□□ -1.83
RRP40YOL142W YKR005CQ02203 525 aa3.61□□□□□ -1.83
RRP40YOL142W GPI17Q04080 534 aa3.61□□□□□ -1.83
RRP40YOL142W KEI1Q06346 221 aa3.61□□□□□ -1.83
Retrieved 100 of 5,963 RNA–protein pairs in 111.2 ms