RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP116	YMR047C	SNT309	Q06091	175 aa	Predicted RBP	4.24	□□□□□ -1.73
NUP116	YMR047C	WSC3	Q12215	556 aa		4.24	□□□□□ -1.73
NUP116	YMR047C	RPS25A	Q3E792	108 aa	Predicted RBP	4.24	□□□□□ -1.73
NUP116	YMR047C	MNS1	P32906	549 aa		4.24	□□□□□ -1.73
NUP116	YMR047C	AHP1	P38013	176 aa	Known RBP	4.24	□□□□□ -1.73
NUP116	YMR047C	FMC1	P40491	155 aa		4.24	□□□□□ -1.73
NUP116	YMR047C	SBH2	P52871	88 aa		4.24	□□□□□ -1.73
NUP116	YMR047C	LST7	P53237	242 aa		4.24	□□□□□ -1.73
NUP116	YMR047C	CNL1	Q06333	122 aa		4.24	□□□□□ -1.73
NUP116	YMR047C	MHF1	Q3E835	90 aa		4.24	□□□□□ -1.73
NUP116	YMR047C	YPL229W	Q99395	206 aa		4.24	□□□□□ -1.73
NUP116	YMR047C	HEM4	P06174	275 aa		4.24	□□□□□ -1.73
NUP116	YMR047C	KTI12	P34253	313 aa	Known RBP	4.24	□□□□□ -1.73
NUP116	YMR047C	CUE4	Q04201	117 aa	Predicted RBP	4.24	□□□□□ -1.73
NUP116	YMR047C	DCI1	Q08558	271 aa		4.24	□□□□□ -1.73
NUP116	YMR047C	TRM13	Q12383	476 aa		4.24	□□□□□ -1.73
NUP116	YMR047C	SPO24	Q3E752	67 aa		4.24	□□□□□ -1.73
NUP116	YMR047C	RPL15A	P05748	204 aa	Known RBP	4.23	□□□□□ -1.73
NUP116	YMR047C	YKL071W	P36086	256 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	SDH4	P37298	181 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	SYS1	P41544	203 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	CHA4	P43634	648 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	RPL15B	P54780	204 aa	Predicted RBP	4.23	□□□□□ -1.73
NUP116	YMR047C	CYT2	Q00873	224 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	YMR253C	Q04835	414 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	MRPL51	Q06090	140 aa	Predicted RBP	4.23	□□□□□ -1.73
NUP116	YMR047C	IPK1	Q06667	281 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	ALG6	Q12001	544 aa	Known RBP	4.23	□□□□□ -1.73
NUP116	YMR047C	YDR215C	Q12240	137 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	YDL085C-A	Q3E7B7	68 aa	Known RBP	4.23	□□□□□ -1.73
NUP116	YMR047C	CDC34	P14682	295 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	CDC43	P18898	376 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	DUT1	P33317	147 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	MTR2	P34232	184 aa	Known RBP	4.23	□□□□□ -1.73
NUP116	YMR047C	CHL4	P38907	458 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	REE1	P40893	198 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	NIF3	P53081	288 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	YNL095C	P53932	642 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	IRC19	Q07843	230 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	YGK3	Q12222	375 aa	Predicted RBP	4.23	□□□□□ -1.73
NUP116	YMR047C	YPR015C	Q12531	247 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	HBN1	Q96VH4	193 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	SGA1	P08019	549 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	ATP5	P09457	212 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	YHR130C	P38834	111 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	PEX7	P39108	375 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	MPM1	P40364	252 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	MRPL49	P40858	161 aa	Predicted RBP	4.23	□□□□□ -1.73
NUP116	YMR047C	AAD14	P42884	376 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	YKR011C	Q02209	353 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	ELC1	Q03071	99 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	TMA23	Q03525	211 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	FRE8	Q12209	686 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	TPT1	Q12272	230 aa	Known RBP	4.23	□□□□□ -1.73
NUP116	YMR047C	MHF2	Q3E829	80 aa		4.23	□□□□□ -1.73
NUP116	YMR047C	RPL27A	P0C2H6	136 aa	Known RBP	4.22	□□□□□ -1.73
NUP116	YMR047C	RPL27B	P0C2H7	136 aa	Known RBP	4.22	□□□□□ -1.73
NUP116	YMR047C	DAT1	P13483	248 aa	Known RBP	4.22	□□□□□ -1.73
NUP116	YMR047C	QDR3	P38227	689 aa		4.22	□□□□□ -1.73
NUP116	YMR047C	OST3	P48439	350 aa		4.22	□□□□□ -1.73
NUP116	YMR047C	MSY1	P48527	492 aa		4.22	□□□□□ -1.73
NUP116	YMR047C	RDL2	Q08742	149 aa	Known RBP	4.22	□□□□□ -1.73
NUP116	YMR047C	YLR099W-A	Q3E798	87 aa		4.22	□□□□□ -1.73
NUP116	YMR047C	HAC1	P41546	238 aa		4.22	□□□□□ -1.73
NUP116	YMR047C	HIT1	P46973	164 aa		4.22	□□□□□ -1.73
NUP116	YMR047C	YIP1	P53039	248 aa		4.22	□□□□□ -1.73
NUP116	YMR047C	SAY1	P53324	424 aa		4.22	□□□□□ -1.73
NUP116	YMR047C	ERV29	P53337	310 aa		4.22	□□□□□ -1.73
NUP116	YMR047C	YNL033W	P53964	284 aa		4.22	□□□□□ -1.73
NUP116	YMR047C	YNL019C	P53975	284 aa		4.22	□□□□□ -1.73
NUP116	YMR047C	MCH1	Q07376	486 aa		4.22	□□□□□ -1.73
NUP116	YMR047C	YRA1	Q12159	226 aa	Known RBP	4.22	□□□□□ -1.73
NUP116	YMR047C	SWM1	Q12379	170 aa		4.22	□□□□□ -1.73
NUP116	YMR047C	YPR170W-B	P0C5R9	85 aa		4.21	□□□□□ -1.73
NUP116	YMR047C	CPT1	P17898	393 aa		4.21	□□□□□ -1.73
NUP116	YMR047C	RFA3	P26755	122 aa	Known RBP	4.21	□□□□□ -1.73
NUP116	YMR047C	MRP20	P32387	263 aa		4.21	□□□□□ -1.73
NUP116	YMR047C	ARO9	P38840	513 aa	Predicted RBP	4.21	□□□□□ -1.73
NUP116	YMR047C	PTH1	P38876	190 aa	Known RBP	4.21	□□□□□ -1.73
NUP116	YMR047C	ERJ5	P43613	295 aa	Predicted RBP	4.21	□□□□□ -1.73
NUP116	YMR047C	YGL101W	P53144	215 aa		4.21	□□□□□ -1.73
NUP116	YMR047C	YNR040W	P53736	256 aa		4.21	□□□□□ -1.73
NUP116	YMR047C	YMR315W	Q04869	349 aa	Known RBP	4.21	□□□□□ -1.73
NUP116	YMR047C	GEP3	Q08622	556 aa		4.21	□□□□□ -1.73
NUP116	YMR047C	YOR029W	Q12243	111 aa		4.21	□□□□□ -1.73
NUP116	YMR047C	YIR021W-A	Q3E739	70 aa		4.21	□□□□□ -1.73
NUP116	YMR047C	GDH1	P07262	454 aa	Known RBP	4.21	□□□□□ -1.74
NUP116	YMR047C	PUT1	P09368	476 aa		4.21	□□□□□ -1.74
NUP116	YMR047C	ATP10	P18496	279 aa		4.21	□□□□□ -1.74
NUP116	YMR047C	MAK32	P23060	363 aa		4.21	□□□□□ -1.74
NUP116	YMR047C	PCL1	P24867	279 aa		4.21	□□□□□ -1.74
NUP116	YMR047C	RAD23	P32628	398 aa	Known RBP	4.21	□□□□□ -1.74
NUP116	YMR047C	MRPL16	P38064	232 aa		4.21	□□□□□ -1.74
NUP116	YMR047C	MRPS9	P38120	278 aa		4.21	□□□□□ -1.74
NUP116	YMR047C	MTC4	P38335	694 aa	Known RBP	4.21	□□□□□ -1.74
NUP116	YMR047C	CUE1	P38428	203 aa		4.21	□□□□□ -1.74
NUP116	YMR047C	YHC3	P47040	408 aa		4.21	□□□□□ -1.74
NUP116	YMR047C	NCE102	Q12207	173 aa	RIP-Chip data	4.21	□□□□□ -1.74	not detected
NUP116	YMR047C	LAS17	Q12446	633 aa		4.21	□□□□□ -1.74
NUP116	YMR047C	YDR157W	A0A023PZE8	133 aa		4.21	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 254.3 ms