RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF4	YKR036C	RRT14	P40470	206 aa		5.71	□□□□□ -1.5
CAF4	YKR036C	YIL092W	P40497	633 aa		5.71	□□□□□ -1.5
CAF4	YKR036C	RAD4	P14736	754 aa		5.7	□□□□□ -1.5
CAF4	YKR036C	UTP13	Q05946	817 aa	Known RBP	5.7	□□□□□ -1.5
CAF4	YKR036C	GRE2	Q12068	342 aa	Known RBP	5.7	□□□□□ -1.5
CAF4	YKR036C	TRK1	P12685	1235 aa		5.7	□□□□□ -1.5
CAF4	YKR036C	GRX1	P25373	110 aa	Known RBP	5.7	□□□□□ -1.5
CAF4	YKR036C	GRX4	P32642	244 aa		5.7	□□□□□ -1.5
CAF4	YKR036C	STU2	P46675	888 aa		5.7	□□□□□ -1.5
CAF4	YKR036C	EAF6	P47128	113 aa		5.7	□□□□□ -1.5
CAF4	YKR036C	UTP22	P53254	1237 aa	Predicted RBP	5.7	□□□□□ -1.5
CAF4	YKR036C	SRS2	P12954	1174 aa		5.69	□□□□□ -1.5
CAF4	YKR036C	CLB1	P24868	471 aa		5.69	□□□□□ -1.5
CAF4	YKR036C	RTG3	P38165	486 aa		5.69	□□□□□ -1.5
CAF4	YKR036C	TOS1	P38288	455 aa		5.69	□□□□□ -1.5
CAF4	YKR036C	CEP3	P40969	608 aa		5.69	□□□□□ -1.5
CAF4	YKR036C	CIR1	P42940	261 aa		5.69	□□□□□ -1.5
CAF4	YKR036C	TAP42	Q04372	366 aa		5.69	□□□□□ -1.5
CAF4	YKR036C	PLP2	Q12017	286 aa		5.69	□□□□□ -1.5
CAF4	YKR036C	SRP54	P20424	541 aa	Known RBP	5.68	□□□□□ -1.5
CAF4	YKR036C	OSM1	P21375	501 aa	Known RBP	5.68	□□□□□ -1.5
CAF4	YKR036C	BDH2	P39713	417 aa		5.68	□□□□□ -1.5
CAF4	YKR036C	KRE33	P53914	1056 aa	Known RBP	5.68	□□□□□ -1.5
CAF4	YKR036C	YNL011C	P53980	444 aa		5.68	□□□□□ -1.5
CAF4	YKR036C	YOL087C	Q99247	1116 aa		5.68	□□□□□ -1.5
CAF4	YKR036C	DAL5	P15365	543 aa		5.68	□□□□□ -1.5
CAF4	YKR036C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	5.68	□□□□□ -1.5	not detected
CAF4	YKR036C	HPC2	Q01448	625 aa		5.68	□□□□□ -1.5
CAF4	YKR036C	HSP82	P02829	709 aa	Known RBP	5.67	□□□□□ -1.5
CAF4	YKR036C	RPN12	P32496	274 aa		5.67	□□□□□ -1.5
CAF4	YKR036C	MIC60	P36112	540 aa		5.67	□□□□□ -1.5
CAF4	YKR036C	RRD1	P40454	393 aa	Known RBP	5.67	□□□□□ -1.5
CAF4	YKR036C	MSN5	P52918	1224 aa		5.67	□□□□□ -1.5
CAF4	YKR036C	CTT1	P06115	562 aa		5.66	□□□□□ -1.5
CAF4	YKR036C	RNT1	Q02555	471 aa		5.66	□□□□□ -1.5
CAF4	YKR036C	INP54	Q08227	384 aa	Known RBP	5.66	□□□□□ -1.5
CAF4	YKR036C	ETT1	Q08421	412 aa	Known RBP	5.66	□□□□□ -1.5
CAF4	YKR036C	SFI1	Q12369	946 aa		5.66	□□□□□ -1.5
CAF4	YKR036C	AUS1	Q08409	1394 aa		5.66	□□□□□ -1.5
CAF4	YKR036C	VPS72	Q03388	795 aa		5.66	□□□□□ -1.5
CAF4	YKR036C	SML1	Q04964	104 aa		5.66	□□□□□ -1.5
CAF4	YKR036C	HIM1	Q06674	414 aa		5.66	□□□□□ -1.5
CAF4	YKR036C	CYC8	P14922	966 aa		5.65	□□□□□ -1.51
CAF4	YKR036C	RVS167	P39743	482 aa	Known RBP	5.65	□□□□□ -1.51
CAF4	YKR036C	YGL140C	P53120	1219 aa		5.65	□□□□□ -1.51
CAF4	YKR036C	YBP2	P53169	641 aa		5.65	□□□□□ -1.51
CAF4	YKR036C	MRS2	Q01926	470 aa		5.65	□□□□□ -1.51
CAF4	YKR036C	NUP145	P49687	1317 aa		5.65	□□□□□ -1.51
CAF4	YKR036C	MLP1	Q02455	1875 aa	Known RBP	5.64	□□□□□ -1.51
CAF4	YKR036C	MPE1	P35728	441 aa	Known RBP	5.64	□□□□□ -1.51
CAF4	YKR036C	YKL222C	P35995	705 aa		5.64	□□□□□ -1.51
CAF4	YKR036C	PBY1	P38254	753 aa		5.64	□□□□□ -1.51
CAF4	YKR036C	NPA3	P47122	385 aa		5.64	□□□□□ -1.51
CAF4	YKR036C	RRP46	P53256	223 aa	Predicted RBP	5.64	□□□□□ -1.51
CAF4	YKR036C	RIM15	P43565	1770 aa		5.64	□□□□□ -1.51
CAF4	YKR036C	SPB4	P25808	606 aa	Predicted RBP	5.64	□□□□□ -1.51
CAF4	YKR036C	MSH1	P25846	959 aa		5.64	□□□□□ -1.51
CAF4	YKR036C	SAP190	P36123	1033 aa		5.64	□□□□□ -1.51
CAF4	YKR036C	YER156C	P40093	338 aa	Known RBP	5.64	□□□□□ -1.51
CAF4	YKR036C	YMR102C	Q03177	834 aa		5.64	□□□□□ -1.51
CAF4	YKR036C	PUF6	Q04373	656 aa	Known RBP	5.64	□□□□□ -1.51
CAF4	YKR036C	PSH1	Q12161	406 aa		5.64	□□□□□ -1.51
CAF4	YKR036C	UBP10	P53874	792 aa	Predicted RBP	5.63	□□□□□ -1.51
CAF4	YKR036C	DOS2	P54858	310 aa		5.63	□□□□□ -1.51
CAF4	YKR036C	CTF4	Q01454	927 aa		5.63	□□□□□ -1.51
CAF4	YKR036C	RPN7	Q06103	429 aa	Known RBP	5.63	□□□□□ -1.51
CAF4	YKR036C	TPD3	P31383	635 aa		5.62	□□□□□ -1.51
CAF4	YKR036C	SWI3	P32591	825 aa		5.62	□□□□□ -1.51
CAF4	YKR036C	ERT1	P38140	529 aa		5.62	□□□□□ -1.51
CAF4	YKR036C	TAN1	P53072	289 aa	Predicted RBP	5.62	□□□□□ -1.51
CAF4	YKR036C	HST1	P53685	503 aa		5.62	□□□□□ -1.51
CAF4	YKR036C	TUM1	Q08686	304 aa	Known RBP	5.62	□□□□□ -1.51
CAF4	YKR036C	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	5.62	□□□□□ -1.51	not detected
CAF4	YKR036C	CWH41	P53008	833 aa		5.62	□□□□□ -1.51
CAF4	YKR036C	HRQ1	Q05549	1077 aa		5.62	□□□□□ -1.51
CAF4	YKR036C	RIX7	Q07844	837 aa	Known RBP	5.62	□□□□□ -1.51
CAF4	YKR036C	NOP8	Q08287	484 aa	Predicted RBP	5.62	□□□□□ -1.51
CAF4	YKR036C	KAR2	P16474	682 aa	Known RBP	5.61	□□□□□ -1.51
CAF4	YKR036C	HSP104	P31539	908 aa	Known RBP	5.61	□□□□□ -1.51
CAF4	YKR036C	RIM101	P33400	625 aa		5.61	□□□□□ -1.51
CAF4	YKR036C	RTT107	P38850	1070 aa		5.61	□□□□□ -1.51
CAF4	YKR036C	VPS41	P38959	992 aa		5.61	□□□□□ -1.51
CAF4	YKR036C	RTR1	P40084	226 aa	Predicted RBP	5.61	□□□□□ -1.51
CAF4	YKR036C	HYR1	P40581	163 aa	Known RBP	5.61	□□□□□ -1.51
CAF4	YKR036C	DSD1	P53095	428 aa		5.61	□□□□□ -1.51
CAF4	YKR036C	NNF2	P53253	936 aa		5.61	□□□□□ -1.51
CAF4	YKR036C	SQS1	P53866	767 aa	Known RBP	5.61	□□□□□ -1.51
CAF4	YKR036C	HEF3	P53978	1044 aa	Known RBP	5.61	□□□□□ -1.51
CAF4	YKR036C	KIN4	Q01919	800 aa		5.61	□□□□□ -1.51
CAF4	YKR036C	THI22	Q06490	572 aa		5.61	□□□□□ -1.51
CAF4	YKR036C	PSE1	P32337	1089 aa	Known RBP	5.6	□□□□□ -1.51
CAF4	YKR036C	DLD1	P32891	587 aa		5.6	□□□□□ -1.51
CAF4	YKR036C	PEX21	P50091	288 aa		5.6	□□□□□ -1.51
CAF4	YKR036C	TIM50	Q02776	476 aa		5.6	□□□□□ -1.51
CAF4	YKR036C	NYV1	Q12255	253 aa		5.6	□□□□□ -1.51
CAF4	YKR036C	SWH1	P35845	1188 aa		5.6	□□□□□ -1.51
CAF4	YKR036C	ECM16	Q04217	1267 aa	Known RBP	5.6	□□□□□ -1.51
CAF4	YKR036C	APC11	Q12157	165 aa		5.6	□□□□□ -1.51
CAF4	YKR036C	KEX1	P09620	729 aa		5.59	□□□□□ -1.51
CAF4	YKR036C	RAD51	P25454	400 aa		5.59	□□□□□ -1.51

Retrieved 100 of 5,963 RNA–protein pairs in 26.1 ms