RNA–Protein interactions for RNA: YKL173W

SNU114, Transcript of GTPase component of U5 snRNP involved in mRNA splicing via spliceosome, yeast

Gene SNU114, Length 3,027 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU114	YKL173W	ACS2	P52910	683 aa	Known RBP	3.65	□□□□□ -1.83
SNU114	YKL173W	TCB1	Q12466	1186 aa		3.65	□□□□□ -1.83
SNU114	YKL173W	MIP1	P15801	1254 aa		3.65	□□□□□ -1.83
SNU114	YKL173W	TGL4	P36165	910 aa		3.65	□□□□□ -1.83
SNU114	YKL173W	SHM1	P37292	490 aa	Predicted RBP	3.65	□□□□□ -1.83
SNU114	YKL173W	ROM1	P53046	1155 aa		3.65	□□□□□ -1.83
SNU114	YKL173W	NAM8	Q00539	523 aa	Known RBP	3.65	□□□□□ -1.83
SNU114	YKL173W	UBP2	Q01476	1272 aa		3.65	□□□□□ -1.83
SNU114	YKL173W	PHO87	P25360	923 aa		3.64	□□□□□ -1.83
SNU114	YKL173W	SRF1	Q12516	437 aa		3.64	□□□□□ -1.83
SNU114	YKL173W	MCM1	P11746	286 aa		3.64	□□□□□ -1.83
SNU114	YKL173W	GAL2	P13181	574 aa		3.64	□□□□□ -1.83
SNU114	YKL173W	NOB1	Q08444	459 aa	Known RBP	3.64	□□□□□ -1.83
SNU114	YKL173W	TY1A-MR1	Q04215	440 aa		3.63	□□□□□ -1.83
SNU114	YKL173W	RPL34B	P40525	121 aa	Known RBP	3.63	□□□□□ -1.83
SNU114	YKL173W	YIR007W	P40566	764 aa		3.63	□□□□□ -1.83
SNU114	YKL173W	YLR346C	Q06139	101 aa		3.63	□□□□□ -1.83
SNU114	YKL173W	SCW11	P53189	542 aa		3.62	□□□□□ -1.83
SNU114	YKL173W	RPP2B	P02400	110 aa	Known RBP	3.62	□□□□□ -1.83
SNU114	YKL173W	RPS6A	P0CX37	236 aa	Known RBP	3.62	□□□□□ -1.83
SNU114	YKL173W	RPS6B	P0CX38	236 aa	Predicted RBP	3.62	□□□□□ -1.83
SNU114	YKL173W	SSA1	P10591	642 aa	Known RBP	3.62	□□□□□ -1.83
SNU114	YKL173W	SUV3	P32580	737 aa		3.62	□□□□□ -1.83
SNU114	YKL173W	JJJ2	P46997	583 aa		3.62	□□□□□ -1.83
SNU114	YKL173W	NGR1	P32831	672 aa	Known RBP	3.62	□□□□□ -1.83
SNU114	YKL173W	NTH2	P35172	780 aa		3.62	□□□□□ -1.83
SNU114	YKL173W	ROG3	P43602	733 aa		3.62	□□□□□ -1.83
SNU114	YKL173W	YNL165W	P53891	406 aa		3.62	□□□□□ -1.83
SNU114	YKL173W	HAP4	P14064	554 aa		3.61	□□□□□ -1.83
SNU114	YKL173W	PDI1	P17967	522 aa	Known RBP	3.61	□□□□□ -1.83
SNU114	YKL173W	GEF1	P37020	779 aa		3.61	□□□□□ -1.83
SNU114	YKL173W	GAS4	Q08271	471 aa		3.61	□□□□□ -1.83
SNU114	YKL173W	CPS1	P27614	576 aa		3.61	□□□□□ -1.83
SNU114	YKL173W	HXT5	P38695	592 aa		3.61	□□□□□ -1.83
SNU114	YKL173W	YFL034W	P43564	1073 aa		3.61	□□□□□ -1.83
SNU114	YKL173W	UTP7	P40055	554 aa	Known RBP	3.6	□□□□□ -1.83
SNU114	YKL173W	DLD3	P39976	496 aa	Known RBP	3.6	□□□□□ -1.83
SNU114	YKL173W	UBP15	P50101	1230 aa		3.6	□□□□□ -1.83
SNU114	YKL173W	CWC15	Q03772	175 aa	Known RBP	3.6	□□□□□ -1.83
SNU114	YKL173W	RGA2	Q06407	1009 aa		3.6	□□□□□ -1.83
SNU114	YKL173W	ALD2	P47771	506 aa		3.6	□□□□□ -1.83
SNU114	YKL173W	CAF120	P53836	1060 aa		3.6	□□□□□ -1.83
SNU114	YKL173W	DAT1	P13483	248 aa	Known RBP	3.59	□□□□□ -1.83
SNU114	YKL173W	GAR1	P28007	205 aa	Known RBP	3.59	□□□□□ -1.83
SNU114	YKL173W	PSH1	Q12161	406 aa		3.59	□□□□□ -1.83
SNU114	YKL173W	IRE1	P32361	1115 aa		3.59	□□□□□ -1.84
SNU114	YKL173W	TBS1	P38114	1094 aa		3.59	□□□□□ -1.84
SNU114	YKL173W	UTP4	Q06679	776 aa	Known RBP	3.59	□□□□□ -1.84
SNU114	YKL173W	YML083C	Q04526	418 aa		3.58	□□□□□ -1.84
SNU114	YKL173W	LEU1	P07264	779 aa	Known RBP	3.58	□□□□□ -1.84
SNU114	YKL173W	PDC6	P26263	563 aa	Known RBP	3.58	□□□□□ -1.84
SNU114	YKL173W	CYT1	P07143	309 aa		3.57	□□□□□ -1.84
SNU114	YKL173W	SSA4	P22202	642 aa	Known RBP	3.57	□□□□□ -1.84
SNU114	YKL173W	ECM23	Q02710	187 aa		3.57	□□□□□ -1.84
SNU114	YKL173W	CAB1	Q04430	367 aa		3.57	□□□□□ -1.84
SNU114	YKL173W	CUZ1	P53899	274 aa		3.57	□□□□□ -1.84
SNU114	YKL173W	HPF1	Q05164	967 aa		3.57	□□□□□ -1.84
SNU114	YKL173W	KTR2	P33550	425 aa		3.57	□□□□□ -1.84
SNU114	YKL173W	SPR3	P41901	512 aa		3.57	□□□□□ -1.84
SNU114	YKL173W	PUF6	Q04373	656 aa	Known RBP	3.57	□□□□□ -1.84
SNU114	YKL173W	TPS3	P38426	1054 aa	Known RBP	3.56	□□□□□ -1.84
SNU114	YKL173W	KTR7	P40504	517 aa		3.56	□□□□□ -1.84
SNU114	YKL173W	JJJ3	P47138	172 aa		3.56	□□□□□ -1.84
SNU114	YKL173W	SKP1	P52286	194 aa		3.56	□□□□□ -1.84
SNU114	YKL173W	RPC31	P17890	251 aa		3.56	□□□□□ -1.84
SNU114	YKL173W	DIT1	P21623	536 aa		3.56	□□□□□ -1.84
SNU114	YKL173W	SYT1	Q06836	1226 aa		3.56	□□□□□ -1.84
SNU114	YKL173W	YDR461C-A	Q2V2P7	80 aa		3.56	□□□□□ -1.84
SNU114	YKL173W	MLF3	P32047	452 aa		3.55	□□□□□ -1.84
SNU114	YKL173W	MSC7	P38694	644 aa		3.55	□□□□□ -1.84
SNU114	YKL173W	SCD5	P34758	872 aa		3.54	□□□□□ -1.84
SNU114	YKL173W	AHP1	P38013	176 aa	Known RBP	3.54	□□□□□ -1.84
SNU114	YKL173W	YBR197C	P38306	217 aa		3.54	□□□□□ -1.84
SNU114	YKL173W	UBX7	P38349	436 aa		3.54	□□□□□ -1.84
SNU114	YKL173W	LYS5	P50113	272 aa		3.54	□□□□□ -1.84
SNU114	YKL173W	SEN54	Q02825	467 aa	Predicted RBP	3.54	□□□□□ -1.84
SNU114	YKL173W	APC11	Q12157	165 aa		3.54	□□□□□ -1.84
SNU114	YKL173W	DPH6	Q12429	685 aa		3.54	□□□□□ -1.84
SNU114	YKL173W	Q0182	Q9ZZW1	134 aa		3.53	□□□□□ -1.84
SNU114	YKL173W	IOC4	Q04213	475 aa		3.53	□□□□□ -1.84
SNU114	YKL173W	VAN1	P23642	535 aa		3.52	□□□□□ -1.85
SNU114	YKL173W	ALD4	P46367	519 aa	Known RBP	3.52	□□□□□ -1.85
SNU114	YKL173W	RGP1	P16664	663 aa		3.52	□□□□□ -1.85
SNU114	YKL173W	TRK2	P28584	889 aa		3.52	□□□□□ -1.85
SNU114	YKL173W	SRS2	P12954	1174 aa		3.52	□□□□□ -1.85
SNU114	YKL173W	MRPL33	P20084	86 aa		3.52	□□□□□ -1.85
SNU114	YKL173W	NAB2	P32505	525 aa	Known RBP RIP-Chip data	3.52	□□□□□ -1.85	not detected
SNU114	YKL173W	ALA1	P40825	983 aa	Known RBP	3.52	□□□□□ -1.85
SNU114	YKL173W	TRS33	Q99394	268 aa		3.51	□□□□□ -1.85
SNU114	YKL173W	MRPL16	P38064	232 aa		3.51	□□□□□ -1.85
SNU114	YKL173W	YFL066C	P43538	392 aa		3.51	□□□□□ -1.85
SNU114	YKL173W	PAM1	P37304	830 aa	Known RBP	3.5	□□□□□ -1.85
SNU114	YKL173W	BOI1	P38041	980 aa	Known RBP	3.5	□□□□□ -1.85
SNU114	YKL173W	LSO1	Q3E827	93 aa		3.5	□□□□□ -1.85
SNU114	YKL173W	VMA3	P25515	160 aa		3.49	□□□□□ -1.85
SNU114	YKL173W	SSF1	P38789	453 aa	Predicted RBP	3.49	□□□□□ -1.85
SNU114	YKL173W	NAP1	P25293	417 aa	Known RBP	3.49	□□□□□ -1.85
SNU114	YKL173W	KAP122	P32767	1081 aa		3.49	□□□□□ -1.85
SNU114	YKL173W	BOL3	P39724	118 aa		3.49	□□□□□ -1.85
SNU114	YKL173W	YGR035C	P53222	116 aa		3.49	□□□□□ -1.85

Retrieved 100 of 5,963 RNA–protein pairs in 37.5 ms