RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W HAL5P38970 855 aaKnown RBP6.8□□□□□ -1.32
UPF3YGR072W SLN1P39928 1220 aaPredicted RBP6.79□□□□□ -1.32
UPF3YGR072W BOI2P39969 1040 aa6.79□□□□□ -1.32
UPF3YGR072W YDR215CQ12240 137 aa6.79□□□□□ -1.32
UPF3YGR072W FPS1P23900 669 aa6.78□□□□□ -1.32
UPF3YGR072W TBS1P38114 1094 aa6.78□□□□□ -1.32
UPF3YGR072W ALA1P40825 983 aaKnown RBP6.78□□□□□ -1.32
UPF3YGR072W SUM1P46676 1062 aa6.78□□□□□ -1.32
UPF3YGR072W MRX12P47084 519 aa6.78□□□□□ -1.32
UPF3YGR072W KIN1P13185 1064 aa6.77□□□□□ -1.33
UPF3YGR072W IRE1P32361 1115 aa6.77□□□□□ -1.33
UPF3YGR072W SHM1P37292 490 aaPredicted RBP6.77□□□□□ -1.33
UPF3YGR072W JJJ2P46997 583 aa6.77□□□□□ -1.33
UPF3YGR072W MCM16Q12262 181 aa6.77□□□□□ -1.33
UPF3YGR072W AMN1P38285 549 aaPredicted RBP6.76□□□□□ -1.33
UPF3YGR072W MCA1Q08601 432 aa6.76□□□□□ -1.33
UPF3YGR072W GLT1Q12680 2145 aaKnown RBP6.75□□□□□ -1.33
UPF3YGR072W CSE4P36012 229 aa6.74□□□□□ -1.33
UPF3YGR072W MRPL16P38064 232 aa6.74□□□□□ -1.33
UPF3YGR072W SLX8P40072 274 aa6.73□□□□□ -1.33
UPF3YGR072W YDJ1P25491 409 aaKnown RBP6.72□□□□□ -1.33
UPF3YGR072W LSB6P42951 607 aa6.72□□□□□ -1.33
UPF3YGR072W PSH1Q12161 406 aa6.72□□□□□ -1.33
UPF3YGR072W PDC6P26263 563 aaKnown RBP6.71□□□□□ -1.34
UPF3YGR072W LEU3P08638 886 aa6.7□□□□□ -1.34
UPF3YGR072W PDC5P16467 563 aaKnown RBP6.7□□□□□ -1.34
UPF3YGR072W KNS1P32350 737 aaPredicted RBP6.7□□□□□ -1.34
UPF3YGR072W MET1P36150 593 aa6.7□□□□□ -1.34
UPF3YGR072W STB3Q12427 513 aa6.7□□□□□ -1.34
UPF3YGR072W SPT5P27692 1063 aaKnown RBP6.69□□□□□ -1.34
UPF3YGR072W HDA3Q06623 655 aa6.69□□□□□ -1.34
UPF3YGR072W TAT1P38085 619 aa6.68□□□□□ -1.34
UPF3YGR072W SOH1P38633 127 aa6.68□□□□□ -1.34
UPF3YGR072W SPR3P41901 512 aa6.68□□□□□ -1.34
UPF3YGR072W RPS31P05759 152 aaKnown RBP6.67□□□□□ -1.34
UPF3YGR072W GUA1P38625 525 aaKnown RBP6.67□□□□□ -1.34
UPF3YGR072W TY1A-DR2Q03964 440 aaKnown RBP6.67□□□□□ -1.34
UPF3YGR072W PRY1P47032 299 aa6.66□□□□□ -1.34
UPF3YGR072W YBL036CP38197 257 aa6.65□□□□□ -1.34
UPF3YGR072W UTP13Q05946 817 aaKnown RBP6.65□□□□□ -1.34
UPF3YGR072W MAC1P35192 417 aa6.62□□□□□ -1.35
UPF3YGR072W RPN1P38764 993 aaKnown RBP6.62□□□□□ -1.35
UPF3YGR072W YPQ2Q06328 317 aa6.62□□□□□ -1.35
UPF3YGR072W HPC2Q01448 625 aa6.61□□□□□ -1.35
UPF3YGR072W MSC7P38694 644 aa6.6□□□□□ -1.35
UPF3YGR072W ATG3P40344 310 aa6.6□□□□□ -1.35
UPF3YGR072W YPL034WQ03083 165 aa6.6□□□□□ -1.35
UPF3YGR072W CBC2Q08920 208 aaKnown RBP RIP-Chip data6.6□□□□□ -1.35not detected
UPF3YGR072W LEU1P07264 779 aaKnown RBP6.59□□□□□ -1.35
UPF3YGR072W SWI5P08153 709 aa6.58□□□□□ -1.36
UPF3YGR072W ALD2P47771 506 aa6.58□□□□□ -1.36
UPF3YGR072W ALO1P54783 526 aaKnown RBP6.58□□□□□ -1.36
UPF3YGR072W YPP1P46951 817 aa6.56□□□□□ -1.36
UPF3YGR072W YNL165WP53891 406 aa6.56□□□□□ -1.36
UPF3YGR072W BIO2P32451 375 aa6.55□□□□□ -1.36
UPF3YGR072W BRL1P38770 471 aa6.55□□□□□ -1.36
UPF3YGR072W TFB3Q03290 321 aa6.55□□□□□ -1.36
UPF3YGR072W RGP1P16664 663 aa6.54□□□□□ -1.36
UPF3YGR072W TPS3P38426 1054 aaKnown RBP6.54□□□□□ -1.36
UPF3YGR072W ENO2P00925 437 aaKnown RBP6.52□□□□□ -1.37
UPF3YGR072W SUP45P12385 437 aaKnown RBP6.52□□□□□ -1.37
UPF3YGR072W PKC1P24583 1151 aa6.52□□□□□ -1.37
UPF3YGR072W AIM9P40053 627 aaKnown RBP6.52□□□□□ -1.37
UPF3YGR072W OMA1P36163 345 aa6.51□□□□□ -1.37
UPF3YGR072W INP52P50942 1183 aa6.51□□□□□ -1.37
UPF3YGR072W BUD9P53226 547 aa6.51□□□□□ -1.37
UPF3YGR072W YNL108CP53929 270 aa6.51□□□□□ -1.37
UPF3YGR072W NHA1Q99271 985 aa6.51□□□□□ -1.37
UPF3YGR072W RPS6AP0CX37 236 aaKnown RBP6.5□□□□□ -1.37
UPF3YGR072W RPS6BP0CX38 236 aaPredicted RBP6.5□□□□□ -1.37
UPF3YGR072W PGM2P37012 569 aaKnown RBP6.5□□□□□ -1.37
UPF3YGR072W RPP1AP05318 106 aaPredicted RBP6.49□□□□□ -1.37
UPF3YGR072W MCM1P11746 286 aa6.48□□□□□ -1.37
UPF3YGR072W RDS2P19541 446 aaKnown RBP6.48□□□□□ -1.37
UPF3YGR072W MLF3P32047 452 aa6.48□□□□□ -1.37
UPF3YGR072W ALG14P38242 237 aa6.48□□□□□ -1.37
UPF3YGR072W YTA6P40328 754 aa6.48□□□□□ -1.37
UPF3YGR072W IRC24P40580 263 aa6.47□□□□□ -1.37
UPF3YGR072W NTH2P35172 780 aa6.46□□□□□ -1.38
UPF3YGR072W RIM21P48565 533 aa6.46□□□□□ -1.38
UPF3YGR072W Q0182Q9ZZW1 134 aa6.46□□□□□ -1.38
UPF3YGR072W PRK1P40494 810 aa6.45□□□□□ -1.38
UPF3YGR072W HEH2Q03281 663 aa6.44□□□□□ -1.38
UPF3YGR072W NAR1P23503 491 aaKnown RBP6.43□□□□□ -1.38
UPF3YGR072W YFL034WP43564 1073 aa6.43□□□□□ -1.38
UPF3YGR072W GAS5Q08193 484 aa6.43□□□□□ -1.38
UPF3YGR072W AI3P03877 415 aa6.41□□□□□ -1.38
UPF3YGR072W GIS4Q04233 774 aa6.41□□□□□ -1.38
UPF3YGR072W PDI1P17967 522 aaKnown RBP6.4□□□□□ -1.38
UPF3YGR072W PGM1P33401 570 aaKnown RBP6.4□□□□□ -1.38
UPF3YGR072W MTO1P53070 669 aa6.4□□□□□ -1.38
UPF3YGR072W SAC7P17121 654 aa6.38□□□□□ -1.39
UPF3YGR072W RRM3P38766 723 aa6.37□□□□□ -1.39
UPF3YGR072W SKP1P52286 194 aa6.37□□□□□ -1.39
UPF3YGR072W NCL1P38205 684 aaKnown RBP6.36□□□□□ -1.39
UPF3YGR072W AVT1P47082 602 aa6.36□□□□□ -1.39
UPF3YGR072W TSC13Q99190 310 aa6.36□□□□□ -1.39
UPF3YGR072W CYT1P07143 309 aa6.35□□□□□ -1.39
UPF3YGR072W YJL007CP47080 104 aa6.35□□□□□ -1.39
UPF3YGR072W ARI1P53111 347 aaKnown RBP6.35□□□□□ -1.39
Retrieved 100 of 5,963 RNA–protein pairs in 55.4 ms