RNA–Protein interactions for RNA: YGL172W

NUP49, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeastyeast

Gene NUP49, Length 1,419 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NUP49YGL172W YPR204WQ08995 1032 aa8.43□□□□□ -1.06
NUP49YGL172W FUN12P39730 1002 aaKnown RBP8.42□□□□□ -1.06
NUP49YGL172W UBP10P53874 792 aaPredicted RBP8.42□□□□□ -1.06
NUP49YGL172W MAK21Q12176 1025 aaKnown RBP8.42□□□□□ -1.06
NUP49YGL172W UTP10P42945 1769 aaKnown RBP8.41□□□□□ -1.06
NUP49YGL172W LPD1P09624 499 aaKnown RBP8.41□□□□□ -1.06
NUP49YGL172W MRP7P12687 371 aa8.41□□□□□ -1.06
NUP49YGL172W DNM1P54861 757 aa8.41□□□□□ -1.06
NUP49YGL172W NAB6Q03735 1134 aaKnown RBP RIP-Chip data8.41□□□□□ -1.06not detected
NUP49YGL172W DAL5P15365 543 aa8.4□□□□□ -1.06
NUP49YGL172W MGA2P40578 1113 aa8.4□□□□□ -1.06
NUP49YGL172W YGR122WP53272 402 aa8.4□□□□□ -1.06
NUP49YGL172W YDR306CQ06640 478 aa8.4□□□□□ -1.06
NUP49YGL172W SWI1P09547 1314 aa8.39□□□□□ -1.07
NUP49YGL172W NUP133P36161 1157 aa8.39□□□□□ -1.07
NUP49YGL172W CST6P40535 587 aa8.39□□□□□ -1.07
NUP49YGL172W PKH1Q03407 766 aa8.39□□□□□ -1.07
NUP49YGL172W YIL092WP40497 633 aa8.38□□□□□ -1.07
NUP49YGL172W RAT1Q02792 1006 aaKnown RBP8.38□□□□□ -1.07
NUP49YGL172W NOP8Q08287 484 aaPredicted RBP8.38□□□□□ -1.07
NUP49YGL172W YPP1P46951 817 aa8.37□□□□□ -1.07
NUP49YGL172W EAF6P47128 113 aa8.37□□□□□ -1.07
NUP49YGL172W MSN5P52918 1224 aa8.37□□□□□ -1.07
NUP49YGL172W RAD2P07276 1031 aa8.37□□□□□ -1.07
NUP49YGL172W RAD24P32641 659 aa8.37□□□□□ -1.07
NUP49YGL172W CSI1Q04368 295 aa8.37□□□□□ -1.07
NUP49YGL172W SWC3P31376 625 aa8.36□□□□□ -1.07
NUP49YGL172W FCP1Q03254 732 aa8.36□□□□□ -1.07
NUP49YGL172W YJR008WP47085 338 aa8.35□□□□□ -1.07
NUP49YGL172W BDF2Q07442 638 aa8.35□□□□□ -1.07
NUP49YGL172W HAT1Q12341 374 aa8.35□□□□□ -1.07
NUP49YGL172W SCY1P53009 804 aa8.34□□□□□ -1.07
NUP49YGL172W TRP5P00931 707 aaKnown RBP8.33□□□□□ -1.08
NUP49YGL172W CWH41P53008 833 aa8.33□□□□□ -1.08
NUP49YGL172W IRC3Q06683 689 aa8.33□□□□□ -1.08
NUP49YGL172W DIB1Q06819 143 aaPredicted RBP8.33□□□□□ -1.08
NUP49YGL172W CAF20P12962 161 aaKnown RBP8.32□□□□□ -1.08
NUP49YGL172W YKL222CP35995 705 aa8.32□□□□□ -1.08
NUP49YGL172W ERT1P38140 529 aa8.32□□□□□ -1.08
NUP49YGL172W PFF1P38244 976 aa8.32□□□□□ -1.08
NUP49YGL172W ITC1P53125 1264 aa8.32□□□□□ -1.08
NUP49YGL172W SSK22P25390 1331 aaPredicted RBP8.32□□□□□ -1.08
NUP49YGL172W RPS19AP07280 144 aaKnown RBP8.31□□□□□ -1.08
NUP49YGL172W RPS19BP07281 144 aaPredicted RBP8.31□□□□□ -1.08
NUP49YGL172W SMY1P32364 656 aaKnown RBP8.31□□□□□ -1.08
NUP49YGL172W SET1P38827 1080 aaKnown RBP8.31□□□□□ -1.08
NUP49YGL172W BOI2P39969 1040 aa8.31□□□□□ -1.08
NUP49YGL172W CTT1P06115 562 aa8.3□□□□□ -1.08
NUP49YGL172W UBP12P39538 1254 aa8.3□□□□□ -1.08
NUP49YGL172W PSH1Q12161 406 aa8.3□□□□□ -1.08
NUP49YGL172W YNG2P38806 282 aaKnown RBP8.29□□□□□ -1.08
NUP49YGL172W YER156CP40093 338 aaKnown RBP8.29□□□□□ -1.08
NUP49YGL172W KIN4Q01919 800 aa8.29□□□□□ -1.08
NUP49YGL172W POL32P47110 350 aa8.29□□□□□ -1.08
NUP49YGL172W RSM7P47150 247 aa8.29□□□□□ -1.08
NUP49YGL172W SPO1P53541 631 aa8.29□□□□□ -1.08
NUP49YGL172W PUF6Q04373 656 aaKnown RBP8.29□□□□□ -1.08
NUP49YGL172W PMD1P32634 1753 aa8.28□□□□□ -1.08
NUP49YGL172W SSA1P10591 642 aaKnown RBP8.28□□□□□ -1.08
NUP49YGL172W FRD1P32614 470 aaKnown RBP8.28□□□□□ -1.08
NUP49YGL172W UBP16Q02863 499 aa8.28□□□□□ -1.08
NUP49YGL172W ERO1Q03103 563 aa8.28□□□□□ -1.08
NUP49YGL172W SAS4Q04003 481 aa8.28□□□□□ -1.08
NUP49YGL172W SYF1Q04048 859 aaPredicted RBP8.28□□□□□ -1.08
NUP49YGL172W SIT4P20604 311 aa8.27□□□□□ -1.09
NUP49YGL172W ILV3P39522 585 aaKnown RBP8.27□□□□□ -1.09
NUP49YGL172W HXT10P43581 546 aa8.27□□□□□ -1.09
NUP49YGL172W MTC5Q03897 1148 aa8.26□□□□□ -1.09
NUP49YGL172W RLF2Q12495 606 aa8.26□□□□□ -1.09
NUP49YGL172W SUP35P05453 685 aaKnown RBP8.25□□□□□ -1.09
NUP49YGL172W BCH2P36122 765 aa8.25□□□□□ -1.09
NUP49YGL172W SAC3P46674 1301 aa8.25□□□□□ -1.09
NUP49YGL172W SNU66Q12420 587 aaPredicted RBP8.24□□□□□ -1.09
NUP49YGL172W TOP1P04786 769 aa8.23□□□□□ -1.09
NUP49YGL172W ICL1P28240 557 aaPredicted RBP8.23□□□□□ -1.09
NUP49YGL172W NGR1P32831 672 aaKnown RBP8.23□□□□□ -1.09
NUP49YGL172W FPR3P38911 411 aaKnown RBP8.23□□□□□ -1.09
NUP49YGL172W CST9Q06032 482 aa8.23□□□□□ -1.09
NUP49YGL172W DPH6Q12429 685 aa8.23□□□□□ -1.09
NUP49YGL172W GCD7P32502 381 aaPredicted RBP8.22□□□□□ -1.09
NUP49YGL172W SLA1P32790 1244 aa8.22□□□□□ -1.09
NUP49YGL172W SPB4P25808 606 aaPredicted RBP8.21□□□□□ -1.09
NUP49YGL172W YKU70P32807 602 aa8.21□□□□□ -1.09
NUP49YGL172W ICP55P40051 511 aa8.21□□□□□ -1.09
NUP49YGL172W SQS1P53866 767 aaKnown RBP8.21□□□□□ -1.09
NUP49YGL172W THI3Q07471 609 aa8.21□□□□□ -1.09
NUP49YGL172W GRX6Q12438 231 aa8.21□□□□□ -1.09
NUP49YGL172W MGM1P32266 881 aa8.2□□□□□ -1.1
NUP49YGL172W SLX5P32828 619 aaKnown RBP8.2□□□□□ -1.1
NUP49YGL172W NMD2P38798 1089 aaKnown RBP8.2□□□□□ -1.1
NUP49YGL172W HGH1P48362 394 aaKnown RBP8.2□□□□□ -1.1
NUP49YGL172W RET1P22276 1149 aaKnown RBP8.2□□□□□ -1.1
NUP49YGL172W SSF1P38789 453 aaPredicted RBP8.2□□□□□ -1.1
NUP49YGL172W RPT4P53549 437 aaKnown RBP8.2□□□□□ -1.1
NUP49YGL172W KRE2P27809 442 aa8.19□□□□□ -1.1
NUP49YGL172W SPL2P38839 148 aa8.19□□□□□ -1.1
NUP49YGL172W SRC1Q03707 834 aa8.19□□□□□ -1.1
NUP49YGL172W NCB2Q92317 146 aa8.19□□□□□ -1.1
NUP49YGL172W SEC18P18759 758 aaKnown RBP8.18□□□□□ -1.1
NUP49YGL172W GYP5Q12344 894 aa8.18□□□□□ -1.1
Retrieved 100 of 5,963 RNA–protein pairs in 15.6 ms