RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeast

Gene RPN11, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN11	YFR004W	ETP1	P38748	585 aa	Known RBP	7.65	□□□□□ -1.18
RPN11	YFR004W	POM152	P39685	1337 aa		7.65	□□□□□ -1.18
RPN11	YFR004W	YNR021W	P53723	404 aa	Known RBP	7.65	□□□□□ -1.18
RPN11	YFR004W	HIM1	Q06674	414 aa		7.65	□□□□□ -1.18
RPN11	YFR004W	CTI6	Q08923	506 aa		7.64	□□□□□ -1.19
RPN11	YFR004W	YLR278C	Q05854	1341 aa		7.63	□□□□□ -1.19
RPN11	YFR004W	THS1	P04801	734 aa	Known RBP	7.63	□□□□□ -1.19
RPN11	YFR004W	PBS2	P08018	668 aa		7.63	□□□□□ -1.19
RPN11	YFR004W	MAK11	P20484	414 aa	Known RBP	7.63	□□□□□ -1.19
RPN11	YFR004W	RET1	P22276	1149 aa	Known RBP	7.63	□□□□□ -1.19
RPN11	YFR004W	VNX1	P42839	908 aa		7.63	□□□□□ -1.19
RPN11	YFR004W	CTF4	Q01454	927 aa		7.63	□□□□□ -1.19
RPN11	YFR004W	SPP1	Q03012	353 aa		7.63	□□□□□ -1.19
RPN11	YFR004W	ATG20	Q07528	640 aa		7.63	□□□□□ -1.19
RPN11	YFR004W	PMD1	P32634	1753 aa		7.62	□□□□□ -1.19
RPN11	YFR004W	VMA1	P17255	1071 aa	Known RBP	7.62	□□□□□ -1.19
RPN11	YFR004W	SHC1	P39000	512 aa		7.62	□□□□□ -1.19
RPN11	YFR004W	TEA1	P47988	759 aa		7.62	□□□□□ -1.19
RPN11	YFR004W	ERO1	Q03103	563 aa		7.62	□□□□□ -1.19
RPN11	YFR004W	FIG2	P25653	1609 aa		7.62	□□□□□ -1.19
RPN11	YFR004W	TOP1	P04786	769 aa		7.61	□□□□□ -1.19
RPN11	YFR004W	RTG2	P32608	588 aa	Known RBP	7.61	□□□□□ -1.19
RPN11	YFR004W	FAS2	P19097	1887 aa	Known RBP	7.61	□□□□□ -1.19
RPN11	YFR004W	LPD1	P09624	499 aa	Known RBP	7.6	□□□□□ -1.19
RPN11	YFR004W	SIS1	P25294	352 aa	Known RBP	7.6	□□□□□ -1.19
RPN11	YFR004W	HSP104	P31539	908 aa	Known RBP	7.6	□□□□□ -1.19
RPN11	YFR004W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	7.6	□□□□□ -1.19	not detected
RPN11	YFR004W	DSD1	P53095	428 aa		7.6	□□□□□ -1.19
RPN11	YFR004W	MDG1	P53885	366 aa		7.6	□□□□□ -1.19
RPN11	YFR004W	RMT2	Q03305	412 aa		7.6	□□□□□ -1.19
RPN11	YFR004W	TRK1	P12685	1235 aa		7.59	□□□□□ -1.19
RPN11	YFR004W	ICL1	P28240	557 aa	Predicted RBP	7.59	□□□□□ -1.19
RPN11	YFR004W	RAT1	Q02792	1006 aa	Known RBP	7.59	□□□□□ -1.19
RPN11	YFR004W	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	7.58	□□□□□ -1.2	not detected
RPN11	YFR004W	PHM7	Q12252	991 aa		7.58	□□□□□ -1.2
RPN11	YFR004W	SET4	P42948	560 aa		7.57	□□□□□ -1.2
RPN11	YFR004W	BDF2	Q07442	638 aa		7.57	□□□□□ -1.2
RPN11	YFR004W	NOP53	Q12080	455 aa	Known RBP	7.57	□□□□□ -1.2
RPN11	YFR004W	YKU70	P32807	602 aa		7.56	□□□□□ -1.2
RPN11	YFR004W	VHR2	P40041	505 aa		7.56	□□□□□ -1.2
RPN11	YFR004W	IRC3	Q06683	689 aa		7.56	□□□□□ -1.2
RPN11	YFR004W	YDL144C	Q07589	356 aa		7.56	□□□□□ -1.2
RPN11	YFR004W	CDC45	Q08032	650 aa		7.56	□□□□□ -1.2
RPN11	YFR004W	AIM7	Q12156	149 aa		7.56	□□□□□ -1.2
RPN11	YFR004W	KAR2	P16474	682 aa	Known RBP	7.55	□□□□□ -1.2
RPN11	YFR004W	SIT4	P20604	311 aa		7.55	□□□□□ -1.2
RPN11	YFR004W	GLC3	P32775	704 aa		7.55	□□□□□ -1.2
RPN11	YFR004W	SER1	P33330	395 aa	Known RBP	7.55	□□□□□ -1.2
RPN11	YFR004W	TIF11	P38912	153 aa	Known RBP	7.55	□□□□□ -1.2
RPN11	YFR004W	VPS27	P40343	622 aa	Known RBP	7.55	□□□□□ -1.2
RPN11	YFR004W	YFR016C	P43597	1233 aa	Known RBP	7.55	□□□□□ -1.2
RPN11	YFR004W	DIB1	Q06819	143 aa	Predicted RBP	7.55	□□□□□ -1.2
RPN11	YFR004W	YOL036W	Q08206	761 aa		7.55	□□□□□ -1.2
RPN11	YFR004W	GRX6	Q12438	231 aa		7.55	□□□□□ -1.2
RPN11	YFR004W	RVB2	Q12464	471 aa	Known RBP	7.55	□□□□□ -1.2
RPN11	YFR004W	HKR1	P41809	1802 aa		7.53	□□□□□ -1.2
RPN11	YFR004W	RPP0	P05317	312 aa	Known RBP	7.53	□□□□□ -1.2
RPN11	YFR004W	COQ8	P27697	501 aa		7.53	□□□□□ -1.2
RPN11	YFR004W	AKL1	P38080	1108 aa	Known RBP	7.53	□□□□□ -1.2
RPN11	YFR004W	YIL089W	P40500	205 aa		7.53	□□□□□ -1.2
RPN11	YFR004W	MPP10	P47083	593 aa	Known RBP	7.53	□□□□□ -1.2
RPN11	YFR004W	NUP42	P49686	430 aa	Known RBP	7.53	□□□□□ -1.2
RPN11	YFR004W	AOS1	Q06624	347 aa		7.53	□□□□□ -1.2
RPN11	YFR004W	SUI2	P20459	304 aa	Known RBP	7.52	□□□□□ -1.21
RPN11	YFR004W	SDH2	P21801	266 aa		7.52	□□□□□ -1.21
RPN11	YFR004W	EAP1	P36041	632 aa	Known RBP	7.52	□□□□□ -1.21
RPN11	YFR004W	ULI1	P43604	169 aa		7.52	□□□□□ -1.21
RPN11	YFR004W	ALE1	Q08548	619 aa		7.52	□□□□□ -1.21
RPN11	YFR004W	SAM3	Q08986	587 aa		7.52	□□□□□ -1.21
RPN11	YFR004W	CAF20	P12962	161 aa	Known RBP	7.51	□□□□□ -1.21
RPN11	YFR004W	DIT2	P21595	489 aa		7.51	□□□□□ -1.21
RPN11	YFR004W	KCC4	P25389	1037 aa		7.51	□□□□□ -1.21
RPN11	YFR004W	YGL082W	P53155	381 aa		7.51	□□□□□ -1.21
RPN11	YFR004W	MAM3	Q12296	706 aa		7.51	□□□□□ -1.21
RPN11	YFR004W	GYP5	Q12344	894 aa		7.51	□□□□□ -1.21
RPN11	YFR004W	FET4	P40988	552 aa		7.5	□□□□□ -1.21
RPN11	YFR004W	SSP2	Q08646	371 aa		7.5	□□□□□ -1.21
RPN11	YFR004W	TYW1	Q08960	810 aa	Known RBP	7.5	□□□□□ -1.21
RPN11	YFR004W	SRF1	Q12516	437 aa		7.5	□□□□□ -1.21
RPN11	YFR004W	MSM1	P22438	575 aa		7.49	□□□□□ -1.21
RPN11	YFR004W	GUA1	P38625	525 aa	Known RBP	7.49	□□□□□ -1.21
RPN11	YFR004W	REF2	P42073	533 aa	Predicted RBP	7.49	□□□□□ -1.21
RPN11	YFR004W	TIM50	Q02776	476 aa		7.49	□□□□□ -1.21
RPN11	YFR004W	UBP16	Q02863	499 aa		7.49	□□□□□ -1.21
RPN11	YFR004W	GAP1	P19145	602 aa	Predicted RBP	7.48	□□□□□ -1.21
RPN11	YFR004W	RTR1	P40084	226 aa	Predicted RBP	7.48	□□□□□ -1.21
RPN11	YFR004W	PEA2	P40091	420 aa		7.48	□□□□□ -1.21
RPN11	YFR004W	RRP46	P53256	223 aa	Predicted RBP	7.48	□□□□□ -1.21
RPN11	YFR004W	ARG8	P18544	423 aa		7.47	□□□□□ -1.21
RPN11	YFR004W	NTH2	P35172	780 aa		7.47	□□□□□ -1.21
RPN11	YFR004W	MAC1	P35192	417 aa		7.47	□□□□□ -1.21
RPN11	YFR004W	EDS1	P38073	919 aa		7.47	□□□□□ -1.21
RPN11	YFR004W	DPL1	Q05567	589 aa		7.47	□□□□□ -1.21
RPN11	YFR004W	TIF6	Q12522	245 aa	Known RBP	7.47	□□□□□ -1.21
RPN11	YFR004W	SSK22	P25390	1331 aa	Predicted RBP	7.47	□□□□□ -1.21
RPN11	YFR004W	PTC3	P34221	468 aa	Known RBP	7.46	□□□□□ -1.22
RPN11	YFR004W	DCW1	P36091	449 aa		7.46	□□□□□ -1.22
RPN11	YFR004W	ATH1	P48016	1211 aa		7.46	□□□□□ -1.22
RPN11	YFR004W	PAP2	P53632	584 aa	Known RBP	7.46	□□□□□ -1.22
RPN11	YFR004W	RPC31	P17890	251 aa		7.45	□□□□□ -1.22

Retrieved 100 of 5,963 RNA–protein pairs in 15 ms