RNA–Protein interactions for RNA: YFL005W

SEC4, Transcript of Rab family GTPase, yeastyeast

Gene SEC4, Length 648 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum, Nucleus, Peroxisome .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC4YFL005W BIM1P40013 344 aa5.89□□□□□ -1.47
SEC4YFL005W ATG32P40458 529 aa5.89□□□□□ -1.47
SEC4YFL005W SBE2P42223 864 aaKnown RBP5.89□□□□□ -1.47
SEC4YFL005W WTM2Q12206 467 aa5.89□□□□□ -1.47
SEC4YFL005W YDJ1P25491 409 aaKnown RBP5.88□□□□□ -1.47
SEC4YFL005W CSE4P36012 229 aa5.87□□□□□ -1.47
SEC4YFL005W DAT1P13483 248 aaKnown RBP5.86□□□□□ -1.47
SEC4YFL005W MCX1P38323 520 aaPredicted RBP5.86□□□□□ -1.47
SEC4YFL005W MRX12P47084 519 aa5.86□□□□□ -1.47
SEC4YFL005W YNL108CP53929 270 aa5.86□□□□□ -1.47
SEC4YFL005W SPT2P06843 333 aaPredicted RBP5.85□□□□□ -1.47
SEC4YFL005W AHP1P38013 176 aaKnown RBP5.85□□□□□ -1.47
SEC4YFL005W TY1A-DR3Q12441 440 aa5.85□□□□□ -1.47
SEC4YFL005W YNR014WP53719 212 aa5.84□□□□□ -1.47
SEC4YFL005W ENO2P00925 437 aaKnown RBP5.83□□□□□ -1.48
SEC4YFL005W SUP45P12385 437 aaKnown RBP5.83□□□□□ -1.48
SEC4YFL005W UTR2P32623 467 aa5.83□□□□□ -1.48
SEC4YFL005W ISR1Q06098 443 aaKnown RBP5.83□□□□□ -1.48
SEC4YFL005W GPM1P00950 247 aaKnown RBP5.82□□□□□ -1.48
SEC4YFL005W TIF1P10081 395 aaKnown RBP5.82□□□□□ -1.48
SEC4YFL005W TBS1P38114 1094 aa5.82□□□□□ -1.48
SEC4YFL005W FPS1P23900 669 aa5.81□□□□□ -1.48
SEC4YFL005W ISF1P32488 338 aa5.81□□□□□ -1.48
SEC4YFL005W APL6P46682 809 aa5.81□□□□□ -1.48
SEC4YFL005W SPT5P27692 1063 aaKnown RBP5.8□□□□□ -1.48
SEC4YFL005W BOI2P39969 1040 aa5.8□□□□□ -1.48
SEC4YFL005W MCM16Q12262 181 aa5.8□□□□□ -1.48
SEC4YFL005W YCK2P23292 546 aaKnown RBP5.79□□□□□ -1.48
SEC4YFL005W ALA1P40825 983 aaKnown RBP5.79□□□□□ -1.48
SEC4YFL005W EMP47P43555 445 aa5.79□□□□□ -1.48
SEC4YFL005W IRE1P32361 1115 aa5.78□□□□□ -1.48
SEC4YFL005W MET1P36150 593 aa5.78□□□□□ -1.48
SEC4YFL005W UTP7P40055 554 aaKnown RBP5.78□□□□□ -1.48
SEC4YFL005W RPL34BP40525 121 aaKnown RBP5.78□□□□□ -1.48
SEC4YFL005W SUM1P46676 1062 aa5.78□□□□□ -1.48
SEC4YFL005W RTG2P32608 588 aaKnown RBP5.77□□□□□ -1.49
SEC4YFL005W RIM21P48565 533 aa5.77□□□□□ -1.49
SEC4YFL005W ENO1P00924 437 aaKnown RBP5.76□□□□□ -1.49
SEC4YFL005W JJJ2P46997 583 aa5.76□□□□□ -1.49
SEC4YFL005W YDR215CQ12240 137 aa5.76□□□□□ -1.49
SEC4YFL005W RDS2P19541 446 aaKnown RBP5.75□□□□□ -1.49
SEC4YFL005W AMN1P38285 549 aaPredicted RBP5.75□□□□□ -1.49
SEC4YFL005W MRX10Q05648 414 aa5.75□□□□□ -1.49
SEC4YFL005W MRPL16P38064 232 aa5.74□□□□□ -1.49
SEC4YFL005W SLN1P39928 1220 aaPredicted RBP5.74□□□□□ -1.49
SEC4YFL005W LSB6P42951 607 aa5.74□□□□□ -1.49
SEC4YFL005W KNS1P32350 737 aaPredicted RBP5.73□□□□□ -1.49
SEC4YFL005W SLX8P40072 274 aa5.73□□□□□ -1.49
SEC4YFL005W TAT1P38085 619 aa5.72□□□□□ -1.49
SEC4YFL005W HAL5P38970 855 aaKnown RBP5.72□□□□□ -1.49
SEC4YFL005W UTP13Q05946 817 aaKnown RBP5.72□□□□□ -1.49
SEC4YFL005W PDC5P16467 563 aaKnown RBP5.71□□□□□ -1.5
SEC4YFL005W SHM1P37292 490 aaPredicted RBP5.71□□□□□ -1.5
SEC4YFL005W ATG3P40344 310 aa5.71□□□□□ -1.5
SEC4YFL005W HDA3Q06623 655 aa5.7□□□□□ -1.5
SEC4YFL005W MCA1Q08601 432 aa5.7□□□□□ -1.5
SEC4YFL005W PSH1Q12161 406 aa5.7□□□□□ -1.5
SEC4YFL005W PDC6P26263 563 aaKnown RBP5.69□□□□□ -1.5
SEC4YFL005W TTI1P36097 1038 aa5.69□□□□□ -1.5
SEC4YFL005W SPR3P41901 512 aa5.69□□□□□ -1.5
SEC4YFL005W YPP1P46951 817 aa5.69□□□□□ -1.5
SEC4YFL005W SUB2Q07478 446 aaKnown RBP5.69□□□□□ -1.5
SEC4YFL005W SSA4P22202 642 aaKnown RBP5.68□□□□□ -1.5
SEC4YFL005W CPS1P27614 576 aa5.68□□□□□ -1.5
SEC4YFL005W PEP12P32854 288 aa5.68□□□□□ -1.5
SEC4YFL005W SOH1P38633 127 aa5.68□□□□□ -1.5
SEC4YFL005W TY1A-DR2Q03964 440 aaKnown RBP5.68□□□□□ -1.5
SEC4YFL005W STB3Q12427 513 aa5.68□□□□□ -1.5
SEC4YFL005W RPP1AP05318 106 aaPredicted RBP5.66□□□□□ -1.5
SEC4YFL005W RPS31P05759 152 aaKnown RBP5.66□□□□□ -1.5
SEC4YFL005W MAC1P35192 417 aa5.66□□□□□ -1.5
SEC4YFL005W SIS2P36024 562 aa5.65□□□□□ -1.5
SEC4YFL005W YPL034WQ03083 165 aa5.65□□□□□ -1.5
SEC4YFL005W SSA1P10591 642 aaKnown RBP5.64□□□□□ -1.51
SEC4YFL005W KTR7P40504 517 aa5.64□□□□□ -1.51
SEC4YFL005W GLT1Q12680 2145 aaKnown RBP5.63□□□□□ -1.51
SEC4YFL005W LEU1P07264 779 aaKnown RBP5.63□□□□□ -1.51
SEC4YFL005W PRY1P47032 299 aa5.63□□□□□ -1.51
SEC4YFL005W YPQ2Q06328 317 aa5.62□□□□□ -1.51
SEC4YFL005W TGL4P36165 910 aa5.61□□□□□ -1.51
SEC4YFL005W CBC2Q08920 208 aaKnown RBP RIP-Chip data5.61□□□□□ -1.51not detected
SEC4YFL005W SWI5P08153 709 aa5.6□□□□□ -1.51
SEC4YFL005W PUP1P25043 261 aa5.6□□□□□ -1.51
SEC4YFL005W GEF1P37020 779 aa5.6□□□□□ -1.51
SEC4YFL005W TPS3P38426 1054 aaKnown RBP5.6□□□□□ -1.51
SEC4YFL005W MSC7P38694 644 aa5.6□□□□□ -1.51
SEC4YFL005W YML083CQ04526 418 aa5.6□□□□□ -1.51
SEC4YFL005W NOB1Q08444 459 aaKnown RBP5.6□□□□□ -1.51
SEC4YFL005W ALO1P54783 526 aaKnown RBP5.59□□□□□ -1.51
SEC4YFL005W RGP1P16664 663 aa5.58□□□□□ -1.52
SEC4YFL005W NHA1Q99271 985 aa5.58□□□□□ -1.52
SEC4YFL005W YTA6P40328 754 aa5.57□□□□□ -1.52
SEC4YFL005W IRC24P40580 263 aa5.57□□□□□ -1.52
SEC4YFL005W ALD2P47771 506 aa5.57□□□□□ -1.52
SEC4YFL005W ECM23Q02710 187 aa5.57□□□□□ -1.52
SEC4YFL005W MCM1P11746 286 aa5.56□□□□□ -1.52
SEC4YFL005W PDI1P17967 522 aaKnown RBP5.56□□□□□ -1.52
SEC4YFL005W OMA1P36163 345 aa5.56□□□□□ -1.52
SEC4YFL005W INP52P50942 1183 aa5.56□□□□□ -1.52
SEC4YFL005W ACS2P52910 683 aaKnown RBP5.56□□□□□ -1.52
Retrieved 100 of 5,963 RNA–protein pairs in 13.6 ms