RNA–Protein interactions for RNA: YDR487C

RIB3, Transcript of 3,4-dihydroxy-2-butanone-4-phosphate synthase (DHBP synthase), yeast

Gene RIB3, Length 627 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RIB3	YDR487C	HEF3	P53978	1044 aa	Known RBP	11.97	□□□□□ -0.49
RIB3	YDR487C	UBP16	Q02863	499 aa		11.97	□□□□□ -0.49
RIB3	YDR487C	YLR271W	Q06152	274 aa		11.97	□□□□□ -0.49
RIB3	YDR487C	ATG20	Q07528	640 aa		11.97	□□□□□ -0.49
RIB3	YDR487C	SSA4	P22202	642 aa	Known RBP	11.96	□□□□□ -0.49
RIB3	YDR487C	SRT1	Q03175	343 aa		11.96	□□□□□ -0.49
RIB3	YDR487C	RRD1	P40454	393 aa	Known RBP	11.95	□□□□□ -0.5
RIB3	YDR487C	RET1	P22276	1149 aa	Known RBP	11.94	□□□□□ -0.5
RIB3	YDR487C	CST6	P40535	587 aa		11.94	□□□□□ -0.5
RIB3	YDR487C	FCP1	Q03254	732 aa		11.93	□□□□□ -0.5
RIB3	YDR487C	PUS5	Q06244	254 aa		11.93	□□□□□ -0.5
RIB3	YDR487C	SWI1	P09547	1314 aa		11.92	□□□□□ -0.5
RIB3	YDR487C	THS1	P04801	734 aa	Known RBP	11.92	□□□□□ -0.5
RIB3	YDR487C	NUP133	P36161	1157 aa		11.92	□□□□□ -0.5
RIB3	YDR487C	MRP7	P12687	371 aa		11.91	□□□□□ -0.5
RIB3	YDR487C	YDR306C	Q06640	478 aa		11.91	□□□□□ -0.5
RIB3	YDR487C	UTP10	P42945	1769 aa	Known RBP	11.91	□□□□□ -0.5
RIB3	YDR487C	DIP2	Q12220	943 aa	Predicted RBP	11.9	□□□□□ -0.5
RIB3	YDR487C	MSM1	P22438	575 aa		11.89	□□□□□ -0.51
RIB3	YDR487C	RPP0	P05317	312 aa	Known RBP	11.88	□□□□□ -0.51
RIB3	YDR487C	SUI2	P20459	304 aa	Known RBP	11.88	□□□□□ -0.51
RIB3	YDR487C	PRY3	P47033	881 aa		11.88	□□□□□ -0.51
RIB3	YDR487C	YJR008W	P47085	338 aa		11.88	□□□□□ -0.51
RIB3	YDR487C	DPL1	Q05567	589 aa		11.88	□□□□□ -0.51
RIB3	YDR487C	RTG2	P32608	588 aa	Known RBP	11.87	□□□□□ -0.51
RIB3	YDR487C	NOP8	Q08287	484 aa	Predicted RBP	11.87	□□□□□ -0.51
RIB3	YDR487C	DPH6	Q12429	685 aa		11.87	□□□□□ -0.51
RIB3	YDR487C	ITC1	P53125	1264 aa		11.86	□□□□□ -0.51
RIB3	YDR487C	TIF4632	P39936	914 aa	Known RBP	11.85	□□□□□ -0.51
RIB3	YDR487C	VPS27	P40343	622 aa	Known RBP	11.85	□□□□□ -0.51
RIB3	YDR487C	PSH1	Q12161	406 aa		11.85	□□□□□ -0.51
RIB3	YDR487C	PMD1	P32634	1753 aa		11.84	□□□□□ -0.51
RIB3	YDR487C	NSR1	P27476	414 aa	Known RBP RIP-Chip data	11.84	□□□□□ -0.51	not detected
RIB3	YDR487C	YGR122W	P53272	402 aa		11.84	□□□□□ -0.51
RIB3	YDR487C	KRE2	P27809	442 aa		11.83	□□□□□ -0.52
RIB3	YDR487C	SET1	P38827	1080 aa	Known RBP	11.83	□□□□□ -0.52
RIB3	YDR487C	ICP55	P40051	511 aa		11.83	□□□□□ -0.52
RIB3	YDR487C	AIM7	Q12156	149 aa		11.83	□□□□□ -0.52
RIB3	YDR487C	YLR278C	Q05854	1341 aa		11.83	□□□□□ -0.52
RIB3	YDR487C	GAP1	P19145	602 aa	Predicted RBP	11.82	□□□□□ -0.52
RIB3	YDR487C	SWC3	P31376	625 aa		11.82	□□□□□ -0.52
RIB3	YDR487C	TRP5	P00931	707 aa	Known RBP	11.81	□□□□□ -0.52
RIB3	YDR487C	SUP35	P05453	685 aa	Known RBP	11.81	□□□□□ -0.52
RIB3	YDR487C	GLC3	P32775	704 aa		11.81	□□□□□ -0.52
RIB3	YDR487C	NGR1	P32831	672 aa	Known RBP	11.81	□□□□□ -0.52
RIB3	YDR487C	FET4	P40988	552 aa		11.81	□□□□□ -0.52
RIB3	YDR487C	SET4	P42948	560 aa		11.81	□□□□□ -0.52
RIB3	YDR487C	UBX2	Q04228	584 aa		11.81	□□□□□ -0.52
RIB3	YDR487C	MAK21	Q12176	1025 aa	Known RBP	11.81	□□□□□ -0.52
RIB3	YDR487C	VHR2	P40041	505 aa		11.8	□□□□□ -0.52
RIB3	YDR487C	RPT4	P53549	437 aa	Known RBP	11.8	□□□□□ -0.52
RIB3	YDR487C	TRM44	Q02648	567 aa	Known RBP	11.8	□□□□□ -0.52
RIB3	YDR487C	TIM50	Q02776	476 aa		11.8	□□□□□ -0.52
RIB3	YDR487C	CDC45	Q08032	650 aa		11.8	□□□□□ -0.52
RIB3	YDR487C	MGM1	P32266	881 aa		11.79	□□□□□ -0.52
RIB3	YDR487C	RAD24	P32641	659 aa		11.79	□□□□□ -0.52
RIB3	YDR487C	THI3	Q07471	609 aa		11.79	□□□□□ -0.52
RIB3	YDR487C	RRG1	Q12167	365 aa	Predicted RBP	11.79	□□□□□ -0.52
RIB3	YDR487C	AFG2	P32794	780 aa		11.78	□□□□□ -0.52
RIB3	YDR487C	UBP12	P39538	1254 aa		11.78	□□□□□ -0.52
RIB3	YDR487C	YPP1	P46951	817 aa		11.78	□□□□□ -0.52
RIB3	YDR487C	MTC5	Q03897	1148 aa		11.78	□□□□□ -0.52
RIB3	YDR487C	GAS5	Q08193	484 aa		11.78	□□□□□ -0.52
RIB3	YDR487C	SAC3	P46674	1301 aa		11.78	□□□□□ -0.52
RIB3	YDR487C	GSM1	P42950	618 aa		11.77	□□□□□ -0.53
RIB3	YDR487C	SRC1	Q03707	834 aa		11.77	□□□□□ -0.53
RIB3	YDR487C	CRF1	Q04930	467 aa		11.77	□□□□□ -0.53
RIB3	YDR487C	SNU66	Q12420	587 aa	Predicted RBP	11.77	□□□□□ -0.53
RIB3	YDR487C	SPL2	P38839	148 aa		11.76	□□□□□ -0.53
RIB3	YDR487C	VPS4	P52917	437 aa		11.76	□□□□□ -0.53
RIB3	YDR487C	YGR117C	P53270	476 aa		11.75	□□□□□ -0.53
RIB3	YDR487C	CSI1	Q04368	295 aa		11.75	□□□□□ -0.53
RIB3	YDR487C	RVB2	Q12464	471 aa	Known RBP	11.75	□□□□□ -0.53
RIB3	YDR487C	SEN54	Q02825	467 aa	Predicted RBP	11.74	□□□□□ -0.53
RIB3	YDR487C	HPR1	P17629	752 aa	Known RBP	11.73	□□□□□ -0.53
RIB3	YDR487C	BOI2	P39969	1040 aa		11.73	□□□□□ -0.53
RIB3	YDR487C	EMP47	P43555	445 aa		11.73	□□□□□ -0.53
RIB3	YDR487C	HXT10	P43581	546 aa		11.73	□□□□□ -0.53
RIB3	YDR487C	PRP42	Q03776	544 aa	Known RBP	11.72	□□□□□ -0.53
RIB3	YDR487C	STV1	P37296	890 aa		11.71	□□□□□ -0.53
RIB3	YDR487C	PEA2	P40091	420 aa		11.71	□□□□□ -0.53
RIB3	YDR487C	IRC4	Q03036	179 aa		11.71	□□□□□ -0.53
RIB3	YDR487C	DAL5	P15365	543 aa		11.7	□□□□□ -0.54
RIB3	YDR487C	YIL089W	P40500	205 aa		11.7	□□□□□ -0.54
RIB3	YDR487C	YRB30	P53107	440 aa	Predicted RBP	11.7	□□□□□ -0.54
RIB3	YDR487C	AAD16	Q02895	342 aa		11.7	□□□□□ -0.54
RIB3	YDR487C	RPS19A	P07280	144 aa	Known RBP	11.69	□□□□□ -0.54
RIB3	YDR487C	RPS19B	P07281	144 aa	Predicted RBP	11.69	□□□□□ -0.54
RIB3	YDR487C	LCB1	P25045	558 aa	Known RBP	11.69	□□□□□ -0.54
RIB3	YDR487C	NUG1	P40010	520 aa	Known RBP	11.69	□□□□□ -0.54
RIB3	YDR487C	CWC15	Q03772	175 aa	Known RBP	11.69	□□□□□ -0.54
RIB3	YDR487C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	11.68	□□□□□ -0.54	not detected
RIB3	YDR487C	TOS4	Q06266	489 aa		11.68	□□□□□ -0.54
RIB3	YDR487C	JJJ2	P46997	583 aa		11.67	□□□□□ -0.54
RIB3	YDR487C	FAS2	P19097	1887 aa	Known RBP	11.67	□□□□□ -0.54
RIB3	YDR487C	PSF3	Q12146	194 aa		11.66	□□□□□ -0.54
RIB3	YDR487C	CBP1	P07252	654 aa		11.65	□□□□□ -0.54
RIB3	YDR487C	YIL092W	P40497	633 aa		11.65	□□□□□ -0.54
RIB3	YDR487C	ADR1	P07248	1323 aa		11.64	□□□□□ -0.55
RIB3	YDR487C	ARG82	P07250	355 aa		11.64	□□□□□ -0.55

Retrieved 100 of 5,963 RNA–protein pairs in 57.3 ms